NO24G01100.1, NO24G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01100.1
Unique NameNO24G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2084
Alignment locationchr24:303324..305704 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:303324..305704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01100.1 vs.
Match: XP_009517805.1 (hypothetical protein PHYSODRAFT_323895 [Phytophthora sojae]; EGZ30530.1 hypothetical protein PHYSODRAFT_323895 [Phytophthora sojae])

HSP 1 Score: 85.1 bits (209), Expect = 4.200e-13
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF--DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YHA W   + ++ L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P+                          L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHAAWLSEEEAAPLSRARAVWIYALLARLDKPVHANVAATIRQILRRCWTLRSELEAPSEVQ-----------------------LKSLNILIVIAGDFFGQ 255
The following BLAST results are available for this feature:
BLAST of NO24G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009517805.14.200e-1340.65hypothetical protein PHYSODRAFT_323895 [Phytophtho... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01100NO24G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01100.1NO24G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01100.1.cds1NO24G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01100.1.cds2NO24G01100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01100.1.cds3NO24G01100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01100.1 ID=NO24G01100.1|Name=NO24G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp
CCTCGAAGGAGGAGGGAGGGGCAAGCGAAGAGAACGAGGAAGATACGTAA
GCCATATTGGATGATTACAAACGGCAAATTGCTTGTCGGTATTGGGCCGT
GCGGCGTGTGAGTCGTGAGGCACTCGCTTAGCCGCGCATGGCTTTGAGGC
CGCCTATGGGTGAGGGTTTTAGTGGAGTGATCGGGAAGCACTGGCCATAT
AGCAGTGACAAGTGTGGTTTGGCATGATCTAATCTGATATACTTTATATT
TCTCATTTTAACCTCACAGTGTGCTCTAAAGAATGCACACGAAGAAATGG
AGGAGAGCTTGAGGAGGCCAGAATGGGAACGTATGCAACAGGCAGGCGGG
AGGTCGTTTGAATTTGACTCCTCTCGCTTCTCGCTCCCTCACAAGCCAGA
CACTTATACAAGAATCTAGACAAAGGCAACAATTATGCGATGTGAACATA
CATATCGCCCTATATATGATGCGTATAAGTAGGCATAATGCTTATGTTTT
CTTTGCATGTTGTTTAAATATCTTAGCTAGTCTGTCGACCTTCTCATCCG
CTCCAAATATATCCAACTTTCTCCCTCCCCACGACAATCATACCACACAG
CCATGATGCAACAAGCTCTTCCCCTCGGGGATGGTGACCACATCGATCCT
CACTACCTACACGAAGTCCAAACCCGTGCCGCGCGTGGCGAGCCCCCCAT
CTCCGCGGAAGAGTACTTGCTTCGGGTCCGCTTGGAATTTGCGGCCTTGC
CCGACGTGATGGAAGCCACGCACATTGACCCCCGGGCATACGACAGCCAC
CAAACCGCCTACATGCCTTCGCAGCCCTCTCTACCGCCCACACCCGCGGA
GTTGGCTCCGTCGGTAGAATGGGAAGAGGACGTGCTGGCGAATTTTTACG
AGGTCCGGGAGAGCTTGACGACGCTTGAGGAGGTGGGGGTAGGCAAGGAC
AGAAAGATCAAGGTTCCGCCCTTAAGAGAGGAAGGGAGTTGGCGCGTATT
TTTCTTTGGTCGTAAGGAAAGGGGGAGAGAGGGGGAGTGGGGAGAGGGAG
GAAGAGGAAAAAGGTGGGAGGGGAGGAGGATGAGAAGGAGATGGTGGTAG
AGGGGAGAAATGGAGAGGAAAGGGGAAACGAGGAGGAGGGCGATGAGATG
AAGGAGGAAAGGGAGAAAGAAAAATTTCCTGAAGTGCCGCCTACGCCTAC
CGCGACGGTGGCTCCCGAAGGAGAAGGACTGGAAGGAGGGATCGAAACTG
CTGCTCCTGCTGCTACCGATGGCCCTACCGCTTCTTCTCAACCTCACCCT
TCCTCCCTCCCTCCCTCCCTCGCCGCCCTCATCTCTCCTCCACCTCCTTC
TCTTCCGGCGTTGCCAAAGCCAGCACCAGCAGTAGCAGTTGCAGCCCCTC
CTGTTGTCTACGAAGGGCCCACCCCGCCCTTGACGAGCTTGGTGCTGCAA
TTTGATCAGGTGTGCACCGTTCGCCTCCTGGCTTATCACGCGCAGTGGTT
CGACAGTTCTTCTTCCTTAAAGTATGCACAGGGTGCATGGCTGTTCGCCT
TGCTGGCCAGGCTCTCTCAGCCCTTACACCCAGAGGCAGCCGCCCTTGTC
CGTCAGATCTACCGACGCTGTTACCTTTTGAGGGCCCATTTTCCCTTACC
AAACCCCGCGGCAGAGGCGGGAGAGGGGAGAGAGGAGGAGGAGAGAGGGA
TTGAAGGAGAGGATGAAGGACCAGTCGCGGTATTGGGGAGGTTGAATACT
TTGATTGCTATCACGGGCACGTTTTTTGAGCAGGCGGAGGGAGAGGGGGC
CGAGAACAGGGACGTTGTAGAGGGCGTTGAAAATGAGCAGGATGAGGCAG
AGCAGCAGCAGCAACAGCAGGCACAGCCTCAGCAGCAGACACAGCAGCAG
CAGCAGCAGCCACCGGAAAGGGTGGAAACAAAGGGAGAGGAGTTGGACAT
TGGGGAAGTAGAAGAAGGACGACAGGCGGAGGAAGAGGAGAGAGAAGATG
GAGAAGTGGAGGAAGGGGAAACTCAATGAGGACCGACGAGTCCGAATAAT
AGCAACGATGCATTTAAAGCACAGCAGATTAGAG
back to top

protein sequence of NO24G01100.1

>NO24G01100.1-protein ID=NO24G01100.1-protein|Name=NO24G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MVVEGRNGEERGNEEEGDEMKEEREKEKFPEVPPTPTATVAPEGEGLEGG
IETAAPAATDGPTASSQPHPSSLPPSLAALISPPPPSLPALPKPAPAVAV
AAPPVVYEGPTPPLTSLVLQFDQVCTVRLLAYHAQWFDSSSSLKYAQGAW
LFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEE
ERGIEGEDEGPVAVLGRLNTLIAITGTFFEQAEGEGAENRDVVEGVENEQ
DEAEQQQQQQAQPQQQTQQQQQQPPERVETKGEELDIGEVEEGRQAEEEE
REDGEVEEGETQ*
back to top

mRNA from alignment at chr24:303324..305704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01100.1 ID=NO24G01100.1|Name=NO24G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at chr24:303324..305704- (Nannochloropsis oceanica)
CCTCGAAGGAGGAGGGAGGGGCAAGCGAAGAGAACGAGGAAGATACGTAA
GCCATATTGGATGATTACAAACGGCAAATTGCTTGTCGGTATTGGGCCGT
GCGGCGTGTGAGTCGTGAGGCACTCGCTTAGCCGCGCATGGCTTTGAGGC
CGCCTATGGGTGAGGGTTTTAGTGGAGTGATCGGGAAGCACTGGCCATAT
AGCAGTGACAAGTGTGGTTTGGCATGATCTAATCTGATATACTTTATATT
TCTCATTTTAACCTCACAGTGTGCTCTAAAGAATGCACACGAAGAAATGG
AGGAGAGCTTGAGGAGGCCAGAATGGGAACGTATGCAACAGGCAGGCGGG
AGGTCGTTTGAATTTGACTCCTCTCGCTTCTCGCTCCCTCACAAGCCAGA
CACTTATACAAGAATCTAGACAAAGGCAACAATTATGCGATGTGAACATA
CATATCGCCCTATATATGATGCGTATAAGTAGGCATAATGCTTATGTTTT
CTTTGCATGTTGTTTAAATATCTTAGCTAGTCTGTCGACCTTCTCATCCG
CTCCAAATATATCCAACTTTCTCCCTCCCCACGACAATCATACCACACAG
CCATGATGCAACAAGCTCTTCCCCTCGGGGATGGTGACCACATCGATCCT
CACTACCTACACGAAGTCCAAACCCGTGCCGCGCGTGGCGAGCCCCCCAT
CTCCGCGGAAGAGTACTTGCTTCGGGTCCGCTTGGAATTTGCGGCCTTGC
CCGACGTGATGGAAGCCACGCACATTGACCCCCGGGCATACGACAGCCAC
CAAACCGCCTACATGCCTTCGCAGCCCTCTCTACCGCCCACACCCGCGGA
GTTGGCTCCGTCGGTAGAATGGGAAGAGGACGTGCTGGCGAATTTTTACG
AGGTCCGGGAGAGCTTGACGACGCTTGAGGAGGTGGGGGTAGGCAAGGAC
AGAAAGATCAAGGTTCCGCCCTTAAGAGAGGAAGGGAGTTGGCGCGTATT
TTTCTTTGGTCGTAAGGAAAGGGGGAGAGAGGGGGAGTGGGGAGAGGGAG
GAAGAGGAAAAAGGTGGGAGGGGAGGAGGATGAGAAGGAGATGGTGGTAG
AGGGGAGAAATGGAGAGGAAAGGGGAAACGAGGAGGAGGGCGATGAGATG
AAGGAGGAAAGGGAGAAAGAAAAATTTCCTGAAGTGCCGCCTACGCCTAC
CGCGACGGTGGCTCCCGAAGGAGAAGGACTGGAAGGAGGGATCGAAACTG
CTGCTCCTGCTGCTACCGATGGCCCTACCGCTTCTTCTCAACCTCACCCT
TCCTCCCTCCCTCCCTCCCTCGCCGCCCTCATCTCTCCTCCACCTCCTTC
TCTTCCGGCGTTGCCAAAGCCAGCACCAGCAGTAGCAGTTGCAGCCCCTC
CTGTTGTCTACGAAGGGCCCACCCCGCCCTTGACGAGCTTGGTGCTGCAA
TTTGATCAGGTAGGGAGGGAGGGGTACAGCGAGACAGATTTGGGGTGGGA
GTAGGAGGCCTCATCGATGTGGTCGCATTTTGGGCCGGCTGTAAGCAGTT
CTCACACTCGTCTATCTCCCTTCGCTGCTTCTCATCTCTTTCGACTATGC
AGGTGTGCACCGTTCGCCTCCTGGCTTATCACGCGCAGTGGTTCGACAGT
TCTTCTTCCTTAAAGTATGCACAGGGTGCATGGCTGTTCGCCTTGCTGGC
CAGGTAGGTAGGGAAGGAGGGCGGGAAAGGGGAAGGACGAGGCCGGGGAC
CGTGGTCGCTCAATCAAAGTTAGTTACTGGAGCTCGCAAGCTAGCCACTC
GCCAACCCGCTCATGTCTTGTCTGTCTGTCCCCCTTTCCATCACTTCAAT
CGAACAGGCTCTCTCAGCCCTTACACCCAGAGGCAGCCGCCCTTGTCCGT
CAGATCTACCGACGCTGTTACCTTTTGAGGGCCCATTTTCCCTTACCAAA
CCCCGCGGCAGAGGCGGGAGAGGGGAGAGAGGAGGAGGAGAGAGGGATTG
AAGGAGAGGATGAAGGACCAGTCGCGGTATTGGGGAGGTTGAATACTTTG
ATTGCTATCACGGGCACGTTTTTTGAGCAGGCGGAGGGAGAGGGGGCCGA
GAACAGGGACGTTGTAGAGGGCGTTGAAAATGAGCAGGATGAGGCAGAGC
AGCAGCAGCAACAGCAGGCACAGCCTCAGCAGCAGACACAGCAGCAGCAG
CAGCAGCCACCGGAAAGGGTGGAAACAAAGGGAGAGGAGTTGGACATTGG
GGAAGTAGAAGAAGGACGACAGGCGGAGGAAGAGGAGAGAGAAGATGGAG
AAGTGGAGGAAGGGGAAACTCAATGAGGACCGACGAGTCCGAATAATAGC
AACGATGCATTTAAAGCACAGCAGATTAGAG
back to top

Coding sequence (CDS) from alignment at chr24:303324..305704-

>NO24G01100.1 ID=NO24G01100.1|Name=NO24G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr24:303324..305704- (Nannochloropsis oceanica)
ATGGTGGTAGAGGGGAGAAATGGAGAGGAAAGGGGAAACGAGGAGGAGGG
CGATGAGATGAAGGAGGAAAGGGAGAAAGAAAAATTTCCTGAAGTGCCGC
CTACGCCTACCGCGACGGTGGCTCCCGAAGGAGAAGGACTGGAAGGAGGG
ATCGAAACTGCTGCTCCTGCTGCTACCGATGGCCCTACCGCTTCTTCTCA
ACCTCACCCTTCCTCCCTCCCTCCCTCCCTCGCCGCCCTCATCTCTCCTC
CACCTCCTTCTCTTCCGGCGTTGCCAAAGCCAGCACCAGCAGTAGCAGTT
GCAGCCCCTCCTGTTGTCTACGAAGGGCCCACCCCGCCCTTGACGAGCTT
GGTGCTGCAATTTGATCAGGTGTGCACCGTTCGCCTCCTGGCTTATCACG
CGCAGTGGTTCGACAGTTCTTCTTCCTTAAAGTATGCACAGGGTGCATGG
CTGTTCGCCTTGCTGGCCAGGCTCTCTCAGCCCTTACACCCAGAGGCAGC
CGCCCTTGTCCGTCAGATCTACCGACGCTGTTACCTTTTGAGGGCCCATT
TTCCCTTACCAAACCCCGCGGCAGAGGCGGGAGAGGGGAGAGAGGAGGAG
GAGAGAGGGATTGAAGGAGAGGATGAAGGACCAGTCGCGGTATTGGGGAG
GTTGAATACTTTGATTGCTATCACGGGCACGTTTTTTGAGCAGGCGGAGG
GAGAGGGGGCCGAGAACAGGGACGTTGTAGAGGGCGTTGAAAATGAGCAG
GATGAGGCAGAGCAGCAGCAGCAACAGCAGGCACAGCCTCAGCAGCAGAC
ACAGCAGCAGCAGCAGCAGCCACCGGAAAGGGTGGAAACAAAGGGAGAGG
AGTTGGACATTGGGGAAGTAGAAGAAGGACGACAGGCGGAGGAAGAGGAG
AGAGAAGATGGAGAAGTGGAGGAAGGGGAAACTCAATGA
back to top
Synonyms
Publications