NO24G01100, NO24G01100 (gene) Nannochloropsis oceanica

Overview
NameNO24G01100
Unique NameNO24G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2381
Alignment locationchr24:303324..305704 -

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Properties
Property NameValue
DescriptionGem-associated protein 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:303324..305704 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035426Gemin2/Brr1
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0000245spliceosomal complex assembly
Homology
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: ETI34436.1 (hypothetical protein F443_19090 [Phytophthora parasitica P1569] >ETM34612.1 hypothetical protein L914_18328 [Phytophthora parasitica])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 51/122 (41.80%), Postives = 62/122 (50.82%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YHA W  +  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P                       P   L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHAAWLSEEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAP-----------------------PEIQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: ETK74738.1 (hypothetical protein L915_18516 [Phytophthora parasitica] >ETL28165.1 hypothetical protein L916_18416 [Phytophthora parasitica] >ETP04267.1 hypothetical protein F441_18900 [Phytophthora parasitica CJ01A1] >ETP32412.1 hypothetical protein F442_18870 [Phytophthora parasitica P10297])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 51/122 (41.80%), Postives = 62/122 (50.82%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YHA W  +  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P                       P   L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHAAWLSEEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAP-----------------------PEIQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: XP_008896962.1 (hypothetical protein PPTG_05208 [Phytophthora parasitica INRA-310] >ETL81406.1 hypothetical protein L917_18244 [Phytophthora parasitica] >ETN17395.1 hypothetical protein PPTG_05208 [Phytophthora parasitica INRA-310] >ETO63227.1 hypothetical protein F444_19043 [Phytophthora parasitica P1976] >KUF77059.1 Gem-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 51/122 (41.80%), Postives = 62/122 (50.82%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YHA W  +  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P                       P   L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHAAWLSEEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAP-----------------------PEIQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: XP_008896958.1 (hypothetical protein PPTG_05204 [Phytophthora parasitica INRA-310] >ETN17391.1 hypothetical protein PPTG_05204 [Phytophthora parasitica INRA-310])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 51/122 (41.80%), Postives = 62/122 (50.82%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YHA W  +  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P                       P   L  LN LI I G FF Q
Sbjct:   22 TPPHLRLLLQFDQVLTRRLLDYHAAWLSEEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAP-----------------------PEIQLKSLNILIVIAGDFFGQ 120
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: EWM21081.1 (hypothetical protein Naga_101675g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = 0 
Query:  153 ALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERG--------IEGEDEGPVAVLGRLNTLIAITGTFFEQAEG 235
            +LL RLSQPLHPEAAALVRQIYRRCYLLRA   LP  +    E    E+ G                  VL RLNTLIAITG +FEQAEG
Sbjct:   28 SLLLRLSQPLHPEAAALVRQIYRRCYLLRAAMTLPEESGTVEEVAAVEDEGKXXXXXXXXXXXXXXQKEVLARLNTLIAITGIYFEQAEG 117
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: XP_009517805.1 (hypothetical protein PHYSODRAFT_323895 [Phytophthora sojae] >EGZ30530.1 hypothetical protein PHYSODRAFT_323895 [Phytophthora sojae])

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-13
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF--DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YHA W   + ++ L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P+                          L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHAAWLSEEEAAPLSRARAVWIYALLARLDKPVHANVAATIRQILRRCWTLRSELEAPSEVQ-----------------------LKSLNILIVIAGDFFGQ 255
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: KUF81005.1 (hypothetical protein AM588_10000779 [Phytophthora nicotianae] >KUF95112.1 hypothetical protein AM588_10010078 [Phytophthora nicotianae])

HSP 1 Score: 84.7 bits (208), Expect = 5.500e-13
Identity = 50/122 (40.98%), Postives = 61/122 (50.00%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YH  W  +  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P                       P   L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHVAWLSEEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAP-----------------------PEIQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: XP_002907401.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY63965.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 84.3 bits (207), Expect = 7.100e-13
Identity = 50/122 (40.98%), Postives = 61/122 (50.00%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T +LL YHA W  D  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR     P+                          L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRKLLDYHAAWLSDEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRCELEKPSEMQ-----------------------LKSLNILIVIAGDFFGQ 254
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: KUF94619.1 (Gem-associated protein 2 [Phytophthora nicotianae])

HSP 1 Score: 84.3 bits (207), Expect = 7.100e-13
Identity = 50/122 (40.98%), Postives = 61/122 (50.00%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+LQFDQV T RLL YH  W  +  + L  A+  W++ALLARL +P+H   AA +RQI RRC+ LR+    P                       P   L  LN LI I G FF Q
Sbjct:  156 TPPHLRLLLQFDQVLTRRLLDYHXAWLSEEMTPLSRARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAP-----------------------PEIQLKSLNILIVIAGDFFGQ 254
[Close]
BLAST of NO24G01100 vs. NCBI_GenBank
Match: XP_024573561.1 (gem-associated protein 2 [Plasmopara halstedii] >CEG37192.1 gem-associated protein 2 [Plasmopara halstedii])

HSP 1 Score: 82.0 bits (201), Expect = 3.500e-12
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 0 
Query:  111 TPPLTSLVLQFDQVCTVRLLAYHAQWF-DSSSSLKYAQGAWLFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEEERGIEGEDEGPVAVLGRLNTLIAITGTFFEQ 232
            TPP   L+L+FDQV T RLL YHA W  +  + L  A+  W++ALLARL +P+H   AA++RQI RRC+ LR                      +E + E  + +   LN LI ITG +F Q
Sbjct:  153 TPPHLRLLLKFDQVLTRRLLDYHAAWLCEGVTLLTKARAVWIYALLARLDKPVHSNVAAVIRQILRRCWTLRCE--------------------LEPQSEAQIKL---LNILIVITGDYFGQ 251
The following BLAST results are available for this feature:
BLAST of NO24G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETI34436.11.900e-1341.80hypothetical protein F443_19090 [Phytophthora para... [more]
ETK74738.11.900e-1341.80hypothetical protein L915_18516 [Phytophthora para... [more]
XP_008896962.11.900e-1341.80hypothetical protein PPTG_05208 [Phytophthora para... [more]
XP_008896958.11.900e-1341.80hypothetical protein PPTG_05204 [Phytophthora para... [more]
EWM21081.11.900e-1356.67hypothetical protein Naga_101675g1, partial [Nanno... [more]
XP_009517805.13.200e-1340.65hypothetical protein PHYSODRAFT_323895 [Phytophtho... [more]
KUF81005.15.500e-1340.98hypothetical protein AM588_10000779 [Phytophthora ... [more]
XP_002907401.17.100e-1340.98conserved hypothetical protein [Phytophthora infes... [more]
KUF94619.17.100e-1340.98Gem-associated protein 2 [Phytophthora nicotianae][more]
XP_024573561.13.500e-1240.16gem-associated protein 2 [Plasmopara halstedii] >C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01100.1NO24G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01100.1NO24G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01100 ID=NO24G01100|Name=NO24G01100|organism=Nannochloropsis oceanica|type=gene|length=2381bp
CCTCGAAGGAGGAGGGAGGGGCAAGCGAAGAGAACGAGGAAGATACGTAA
GCCATATTGGATGATTACAAACGGCAAATTGCTTGTCGGTATTGGGCCGT
GCGGCGTGTGAGTCGTGAGGCACTCGCTTAGCCGCGCATGGCTTTGAGGC
CGCCTATGGGTGAGGGTTTTAGTGGAGTGATCGGGAAGCACTGGCCATAT
AGCAGTGACAAGTGTGGTTTGGCATGATCTAATCTGATATACTTTATATT
TCTCATTTTAACCTCACAGTGTGCTCTAAAGAATGCACACGAAGAAATGG
AGGAGAGCTTGAGGAGGCCAGAATGGGAACGTATGCAACAGGCAGGCGGG
AGGTCGTTTGAATTTGACTCCTCTCGCTTCTCGCTCCCTCACAAGCCAGA
CACTTATACAAGAATCTAGACAAAGGCAACAATTATGCGATGTGAACATA
CATATCGCCCTATATATGATGCGTATAAGTAGGCATAATGCTTATGTTTT
CTTTGCATGTTGTTTAAATATCTTAGCTAGTCTGTCGACCTTCTCATCCG
CTCCAAATATATCCAACTTTCTCCCTCCCCACGACAATCATACCACACAG
CCATGATGCAACAAGCTCTTCCCCTCGGGGATGGTGACCACATCGATCCT
CACTACCTACACGAAGTCCAAACCCGTGCCGCGCGTGGCGAGCCCCCCAT
CTCCGCGGAAGAGTACTTGCTTCGGGTCCGCTTGGAATTTGCGGCCTTGC
CCGACGTGATGGAAGCCACGCACATTGACCCCCGGGCATACGACAGCCAC
CAAACCGCCTACATGCCTTCGCAGCCCTCTCTACCGCCCACACCCGCGGA
GTTGGCTCCGTCGGTAGAATGGGAAGAGGACGTGCTGGCGAATTTTTACG
AGGTCCGGGAGAGCTTGACGACGCTTGAGGAGGTGGGGGTAGGCAAGGAC
AGAAAGATCAAGGTTCCGCCCTTAAGAGAGGAAGGGAGTTGGCGCGTATT
TTTCTTTGGTCGTAAGGAAAGGGGGAGAGAGGGGGAGTGGGGAGAGGGAG
GAAGAGGAAAAAGGTGGGAGGGGAGGAGGATGAGAAGGAGATGGTGGTAG
AGGGGAGAAATGGAGAGGAAAGGGGAAACGAGGAGGAGGGCGATGAGATG
AAGGAGGAAAGGGAGAAAGAAAAATTTCCTGAAGTGCCGCCTACGCCTAC
CGCGACGGTGGCTCCCGAAGGAGAAGGACTGGAAGGAGGGATCGAAACTG
CTGCTCCTGCTGCTACCGATGGCCCTACCGCTTCTTCTCAACCTCACCCT
TCCTCCCTCCCTCCCTCCCTCGCCGCCCTCATCTCTCCTCCACCTCCTTC
TCTTCCGGCGTTGCCAAAGCCAGCACCAGCAGTAGCAGTTGCAGCCCCTC
CTGTTGTCTACGAAGGGCCCACCCCGCCCTTGACGAGCTTGGTGCTGCAA
TTTGATCAGgtagggagggaggggtacagcgagacagatttggggtggga
gtaggaggcctcatcgatgtggtcgcattttgggccggctgtaagcagtt
ctcacactcgtctatctcccttcgctgcttctcatctctttcgactatgc
agGTGTGCACCGTTCGCCTCCTGGCTTATCACGCGCAGTGGTTCGACAGT
TCTTCTTCCTTAAAGTATGCACAGGGTGCATGGCTGTTCGCCTTGCTGGC
CAGgtaggtagggaaggagggcgggaaaggggaaggacgaggccggggac
cgtggtcgctcaatcaaagttagttactggagctcgcaagctagccactc
gccaacccgctcatgtcttgtctgtctgtccccctttccatcacttcaat
cgaacagGCTCTCTCAGCCCTTACACCCAGAGGCAGCCGCCCTTGTCCGT
CAGATCTACCGACGCTGTTACCTTTTGAGGGCCCATTTTCCCTTACCAAA
CCCCGCGGCAGAGGCGGGAGAGGGGAGAGAGGAGGAGGAGAGAGGGATTG
AAGGAGAGGATGAAGGACCAGTCGCGGTATTGGGGAGGTTGAATACTTTG
ATTGCTATCACGGGCACGTTTTTTGAGCAGGCGGAGGGAGAGGGGGCCGA
GAACAGGGACGTTGTAGAGGGCGTTGAAAATGAGCAGGATGAGGCAGAGC
AGCAGCAGCAACAGCAGGCACAGCCTCAGCAGCAGACACAGCAGCAGCAG
CAGCAGCCACCGGAAAGGGTGGAAACAAAGGGAGAGGAGTTGGACATTGG
GGAAGTAGAAGAAGGACGACAGGCGGAGGAAGAGGAGAGAGAAGATGGAG
AAGTGGAGGAAGGGGAAACTCAATGAGGACCGACGAGTCCGAATAATAGC
AACGATGCATTTAAAGCACAGCAGATTAGAG
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protein sequence of NO24G01100.1

>NO24G01100.1-protein ID=NO24G01100.1-protein|Name=NO24G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MVVEGRNGEERGNEEEGDEMKEEREKEKFPEVPPTPTATVAPEGEGLEGG
IETAAPAATDGPTASSQPHPSSLPPSLAALISPPPPSLPALPKPAPAVAV
AAPPVVYEGPTPPLTSLVLQFDQVCTVRLLAYHAQWFDSSSSLKYAQGAW
LFALLARLSQPLHPEAAALVRQIYRRCYLLRAHFPLPNPAAEAGEGREEE
ERGIEGEDEGPVAVLGRLNTLIAITGTFFEQAEGEGAENRDVVEGVENEQ
DEAEQQQQQQAQPQQQTQQQQQQPPERVETKGEELDIGEVEEGRQAEEEE
REDGEVEEGETQ*
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Synonyms
Publications