NO24G00860, NO24G00860 (gene) Nannochloropsis oceanica

Overview
NameNO24G00860
Unique NameNO24G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1424
Alignment locationchr24:238965..240388 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:238965..240388 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018637DUF2059
Homology
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BLAST of NO24G00860 vs. NCBI_GenBank
Match: XP_005853520.1 (hypothetical protein NGA_0269602 [Nannochloropsis gaditana CCMP526] >EKU22837.1 hypothetical protein NGA_0269602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 203.8 bits (517), Expect = 6.500e-49
Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 0 
Query:   71 MEDTKENRQYHAARVMQGTPLIETLEGLVQEAARVKGPDAADKIRQAIRKSDTRALSQVMQNAYASTFTVDELAFIADYSNSEIGKRVQRKMSQYVAKVNPAMEAFTKEVFSGQAVQGESQQRGDRGSQWQHQQATHISEKGTTIIMNGEK 222
            M+DTKENRQYHAARVM+GTPLIE LEGLVQEAAR+KG +AA++IR+AI +SDTRAL+QVM+ AYA TF+ +ELAFIADYSNSE+GKRVQRKMSQYVAKV PAMEAFTKEVFSG  +QG+    G    +WQ QQA + S KGTT+ MN  K
Sbjct:   88 MDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQ----GQGPQEWQDQQALY-SSKGTTVYMNEGK 233
[Close]
BLAST of NO24G00860 vs. NCBI_GenBank
Match: EWM21131.1 (protein of unknown function DUF2059 [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 6.500e-49
Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 0 
Query:   71 MEDTKENRQYHAARVMQGTPLIETLEGLVQEAARVKGPDAADKIRQAIRKSDTRALSQVMQNAYASTFTVDELAFIADYSNSEIGKRVQRKMSQYVAKVNPAMEAFTKEVFSGQAVQGESQQRGDRGSQWQHQQATHISEKGTTIIMNGEK 222
            M+DTKENRQYHAARVM+GTPLIE LEGLVQEAAR+KG +AA++IR+AI +SDTRAL+QVM+ AYA TF+ +ELAFIADYSNSE+GKRVQRKMSQYVAKV PAMEAFTKEVFSG  +QG+    G    +WQ QQA + S KGTT+ MN  K
Sbjct:   88 MDDTKENRQYHAARVMKGTPLIEILEGLVQEAARLKGSEAAEEIRKAILESDTRALTQVMEKAYAGTFSAEELAFIADYSNSEVGKRVQRKMSQYVAKVTPAMEAFTKEVFSGPGLQGQ----GQGPQEWQDQQALY-SSKGTTVYMNEGK 233
The following BLAST results are available for this feature:
BLAST of NO24G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853520.16.500e-4972.19hypothetical protein NGA_0269602 [Nannochloropsis ... [more]
EWM21131.16.500e-4972.19protein of unknown function DUF2059 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004848NSK004848Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00860.1NO24G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598224gene_7316Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g48gene9324Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00860.1NO24G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00860 ID=NO24G00860|Name=NO24G00860|organism=Nannochloropsis oceanica|type=gene|length=1424bp
ATGGGCTTGAGCGCgtgagtatctgcagttccgctatgaaacaatgccgc
cagcatgcctttggaacagctgtgcatcgcccattatcatcagtagttcg
cttctccgatacacgcccatatctcctcactctcacacacccatgccctc
caccccttcacaatacagCCTCGTAACCCTGTGCCCCGTGCGATGGTCCA
ATTATCCTTATCCGTCGTCAGCCGCAGCCGTCGACGGTGgtctatccttc
tcctggtgctcgtgttactcttgctagtcggaaactcgactgcaaagccc
aaccaggccaagaaaacgaaagcgaatgccgcgaccactgacaaagaaga
gcggtcgcagGCGCAGGGGGGAGACAGAATGCTCAGCTACAAGGGAAGAA
GCCGCAGCAGCACAAGGCGCAGATGAAGCTGCAGCAACAGAAGCAGCAAA
AGGCCAAGCGAGAGACCCGGGCCAGCGACGCCACGATGGAGGACACGAAG
GAGAACAGACAATACCATGCCGCCCGCGTTATGCAGGGTACGCCTTTGAT
CGAGACGCTTGAAGGTCTCGTCCAAGAAGCGGCGCGAGTCAAAGGCCCAG
ATGCCGCCGATgtaagtgtggtgtaatgagagtgatatggcttttgagcg
gtccgtttgttgacaacgcgccatcagctctatggtcctctccattctct
tcccatgaccactgtgctatcacatctaaatcaatcaaattccatcttct
ccgcgttgacacataacacttaagAAAATTAGGCAGGCCATCCGCAAATC
AGACACGCGGGCATTGAGCCAGGTGATGCAAAACGCTTACGCCAGCACCT
TCACGGTAGATGAGCTTGCTTTCATAGCAGATTATAGCAATTCTGAGATC
GGAAAACGCGTGCAGCGGAAGATGAGTCAATACGTCGCCAAGgtttgagg
gaaaaggaggaagatggggagggagggaaggggggagagacgggatgaag
tgacaaggaaatgcgtcttccagggtgaactgtcggcagacgcgtaaatt
tcatgtatcatgggaggacgtgcaagccagatgcagaatgcatcccttta
cgcccactcacacagtcagactctcgctgacaccccaaacgctccatcct
tccgcctcaatccaacctccagGTCAATCCCGCGATGGAGGCCTTCACGA
AGGAGGTATTCTCCGGCCAGGCCGTACAAGGAGAGAGCCAGCAGAGAGGG
GACCGAGGGTCTCAGTGGCAGCACCAGCAAGCGACTCACATCTCCGAGAA
AGGCACCACCATCATCATGAACGGCGAGAAAGCCAAGCAAAAGAAGGAAA
GGGAAGCAGCAGAAGCCGCGGCCGCTGCGAAAGGGATGGGGAAAGGCGCT
CGAAGTCCCGCTAATGAGCTCTAA
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protein sequence of NO24G00860.1

>NO24G00860.1-protein ID=NO24G00860.1-protein|Name=NO24G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MGLSALVTLCPVRWSNYPYPSSAAAVDGGAGGRQNAQLQGKKPQQHKAQM
KLQQQKQQKAKRETRASDATMEDTKENRQYHAARVMQGTPLIETLEGLVQ
EAARVKGPDAADKIRQAIRKSDTRALSQVMQNAYASTFTVDELAFIADYS
NSEIGKRVQRKMSQYVAKVNPAMEAFTKEVFSGQAVQGESQQRGDRGSQW
QHQQATHISEKGTTIIMNGEKAKQKKEREAAEAAAAAKGMGKGARSPANE
L*
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Synonyms
Publications