NO24G00660.1, NO24G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00660.1
Unique NameNO24G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1778
Alignment locationchr24:204336..206390 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:204336..206390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00660.1 vs.
Match: EWM21135.1 (Alcohol dehydrogenase GroES-like protein [Nannochloropsis gaditana])

HSP 1 Score: 634.8 bits (1636), Expect = 1.600e-178
Identity = 303/350 (86.57%), Postives = 324/350 (92.57%), Query Frame = 0 
Query:    1 MSSPHEGKPIECKAAVAWEPNKPLVTETIRVDPPKAGEVRLKVIANALCHTDVYTLSGQDPEGLFPCILGHEAGAIVESIGEGVTSVKPGMYVIPCYTPQCQEAGCIYCQSPKTNLCPKIRGTQGKGVMPDGTSRFSTMDGRHIYHFMGCSTFAEYTVVAEISCAVVSDKAPLDKVCLFGCGVSTGLGAVLKTCAVEEGATVAVFGLGAVGLAVVQAAKMRKARRIIAIDMNEKKFEMARQLGATDCLNPSTFGEKPIQTVVVEMTTWGVDYSFDATGNTEVMRAALECAHRGWGVSCVIGVAASGKVIQTRPFQLITGRTWKGTAFGGWKSRVDVPMLVQQYLGGSYPL 351
            MS   +GK IECKAAVAWE NKPLVTETIRVDPPK GEVRLKV+ANALCHTDVYTLSGQDPEGLFPCILGHEAGAIVES+G GVTSV+PGMYVIPCYTPQC++A CI+CQSPKTNLCPKIR TQG+GVMPDGTSRFST+DG+ IYHFMGCSTFAEYTVVAEISCAVVS+KAPLDKVCLFGCGVSTGLGAVLKTCAVEEGA+VAVFGLGAVGLAVVQAAK+RKARRI A+D N KKFEMA QLGATDCLNP+   +KPIQ V+VE TTWGVDYSFDATGN EVMRAALECAHRGWGVSCVIGVAASGK+IQTRPFQLITGR+WKGTAFGGWKSR DVP LV QY+ G  P+
Sbjct:    1 MSDSDKGKVIECKAAVAWEANKPLVTETIRVDPPKEGEVRLKVVANALCHTDVYTLSGQDPEGLFPCILGHEAGAIVESVGPGVTSVQPGMYVIPCYTPQCKDAACIFCQSPKTNLCPKIRATQGRGVMPDGTSRFSTLDGKPIYHFMGCSTFAEYTVVAEISCAVVSEKAPLDKVCLFGCGVSTGLGAVLKTCAVEEGASVAVFGLGAVGLAVVQAAKIRKARRIFAVDTNPKKFEMAVQLGATDCLNPNDIPDKPIQQVIVEATTWGVDYSFDATGNVEVMRAALECAHRGWGVSCVIGVAASGKLIQTRPFQLITGRSWKGTAFGGWKSRTDVPDLVDQYMDGKLPI 350
The following BLAST results are available for this feature:
BLAST of NO24G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21135.11.600e-17886.57Alcohol dehydrogenase GroES-like protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00660NO24G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00660.1NO24G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00660.1.cds1NO24G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00660.1.cds2NO24G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00660.1.cds3NO24G00660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00660.1 ID=NO24G00660.1|Name=NO24G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
TGGAATAACCTCCCCTCTGTGGCTTGTGCGTGTGTGCCTCGATCATTTGC
TTGCTTTGATGTGTATGTCAGCCTGCACTATACATACGATGATGTTGGCC
CGAAAGGCGACGAAGCTGCTCTCCAACTAACAAAAATCACATGTGACGCG
AAAATGCTGCGTGTTATCGTGCTCACAGACCTGTGTGAGAGGAGGAAAGT
CGTGCACGATAACTTGCACTTGTTCTTCCGCAGCATATAAGCTCGCGTCT
GGCTTAGCCAACTACCGCTTCCACCGCACCACTCACACACACACGCCAGT
CTTGAATCAACCCAAGCCATCTCATGTCCAGTCCGCACGAAGGAAAGCCG
ATCGAGTGTAAAGCGGCCGTGGCATGGGAACCGAACAAGCCATTGGTTAC
CGAGACTATCCGCGTGGACCCACCCAAGGCAGGGGAAGTCCGGCTAAAGG
TCATTGCCAATGCCTTGTGCCATACCGACGTTTACACCTTGTCCGGGCAA
GACCCCGAGGGTCTCTTCCCCTGCATCCTAGGCCACGAAGCAGGGGCTAT
TGTCGAGAGCATTGGGGAGGGCGTGACGTCCGTTAAGCCCGGCATGTACG
TCATTCCGTGCTACACTCCGCAATGCCAAGAAGCCGGTTGCATCTACTGC
CAATCCCCCAAGACGAATCTCTGCCCTAAGATCAGGGGGACGCAGGGAAA
AGGAGTCATGCCTGATGGGACTTCACGGTTCAGTACCATGGATGGGAGGC
ACATCTACCACTTTATGGGCTGTTCGACCTTCGCAGAATATACAGTAGTG
GCCGAGATCTCCTGTGCGGTGGTCTCGGACAAGGCGCCGTTGGACAAGGT
GTGCTTGTTTGGGTGCGGAGTGAGCACAGGGCTAGGGGCGGTGCTCAAGA
CTTGCGCAGTGGAGGAGGGGGCGACGGTGGCGGTATTCGGCTTGGGGGCA
GTGGGGCTGGCTGTCGTACAGGCGGCCAAGATGAGGAAAGCGAGGCGGAT
CATTGCGATAGATATGAACGAGAAGAAGTTCGAGATGGCGCGGCAGTTGG
GGGCAACGGATTGTTTGAATCCTTCTACATTTGGTGAGAAGCCGATTCAG
ACGGTGGTGGTGGAGATGACCACGTGGGGAGTGGACTACTCGTTTGACGC
CACAGGAAACACGGAGGTGATGCGGGCGGCTTTGGAGTGCGCGCATCGCG
GGTGGGGGGTGAGTTGTGTGATCGGCGTGGCGGCGAGTGGGAAGGTTATT
CAGACAAGACCTTTTCAGCTGATCACAGGGAGGACATGGAAGGGGACAGC
GTTTGGGGGATGGAAGAGTCGAGTGGATGTGCCGATGCTGGTGCAGCAGT
ACCTGGGGGGGAGTTACCCATTGACCACTACGTGACACATGAGTATGACG
GGGTGGACAAGATCAATGACGCGATTCACGCCTTGCATGAGGGAAACTGT
TTGCGAGCGGTGGTGGCGTATGCCACGCCTTGAGAGTAGAGAGTAGGTTC
GAATAGGCTGAAAGGTTTAGGGTTGCAGCAGTCAGATCAGTTGACAATAT
AGTAGTCGGCTGCGAAAGAGCGGAAAAGGAAAGAATGATCTTCACAAGAG
GATAAATACGAATCAGAGACAACCTCCCCCAACTTCTCATAGCGAGAGGA
GCGAGAGGAGAAAGCGCCTTCGCACTTGTGCTGGCACACCGAGAGAGGCG
GTGATCATACAAGAGGAAGAAAACAATAGTCTGAACTATCGAGCTGGTAT
TGGTAATGGTATGTACGTCTATGCTATT
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protein sequence of NO24G00660.1

>NO24G00660.1-protein ID=NO24G00660.1-protein|Name=NO24G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSSPHEGKPIECKAAVAWEPNKPLVTETIRVDPPKAGEVRLKVIANALCH
TDVYTLSGQDPEGLFPCILGHEAGAIVESIGEGVTSVKPGMYVIPCYTPQ
CQEAGCIYCQSPKTNLCPKIRGTQGKGVMPDGTSRFSTMDGRHIYHFMGC
STFAEYTVVAEISCAVVSDKAPLDKVCLFGCGVSTGLGAVLKTCAVEEGA
TVAVFGLGAVGLAVVQAAKMRKARRIIAIDMNEKKFEMARQLGATDCLNP
STFGEKPIQTVVVEMTTWGVDYSFDATGNTEVMRAALECAHRGWGVSCVI
GVAASGKVIQTRPFQLITGRTWKGTAFGGWKSRVDVPMLVQQYLGGSYPL
TTT*
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mRNA from alignment at chr24:204336..206390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00660.1 ID=NO24G00660.1|Name=NO24G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp|location=Sequence derived from alignment at chr24:204336..206390+ (Nannochloropsis oceanica)
TGGAATAACCTCCCCTCTGTGGCTTGTGCGTGTGTGCCTCGATCATTTGC
TTGCTTTGATGTGTATGTCAGCCTGCACTATACATACGATGATGTTGGCC
CGAAAGGCGACGAAGCTGCTCTCCAACTAACAAAAATCACATGTGACGCG
AAAATGCTGCGTGTTATCGTGCTCACAGACCTGTGTGAGAGGAGGAAAGT
CGTGCACGATAACTTGCACTTGTTCTTCCGCAGCATATAAGCTCGCGTCT
GGCTTAGCCAACTACCGCTTCCACCGCACCACTCACACACACACGCCAGT
CTTGAATCAACCCAAGCCATCTCATGTCCAGTCCGCACGAAGGAAAGCCG
ATCGAGTGTAAAGCGGTGCGTTCCCATTCTCCTCCCTCCCATCGTATTCT
ATAGTTCCACGCATCACGCCTCACGATTCAAGCTGCACACTTACACACCA
TGCAGGCCGTGGCATGGGAACCGAACAAGCCATTGGTTACCGAGACTATC
CGCGTGGACCCACCCAAGGCAGGGGAAGTCCGGCTAAAGGTCATTGCCAA
TGCCTTGTGCCATACCGACGGTGCGTCCACAAGACACGCAAGAAAAGGAG
AGGGATGGGGAAAGCTTGTGTTAAAGAGAGACCTGATGTCATGGATGCTT
GTTATCTGACGCTGTGATGCTTGACCAAGCGGATCCAGCCCTCCACCCTC
GTTCACGCTCCCTCTTCCATCCCCTCCCTATGCCCGTGCCCACCACAAAC
CTCGCAGTTTACACCTTGTCCGGGCAAGACCCCGAGGGTCTCTTCCCCTG
CATCCTAGGCCACGAAGCAGGGGCTATTGTCGAGAGCATTGGGGAGGGCG
TGACGTCCGTTAAGCCCGGCATGTACGTCATTCCGTGCTACACTCCGCAA
TGCCAAGAAGCCGGTTGCATCTACTGCCAATCCCCCAAGACGAATCTCTG
CCCTAAGATCAGGGGGACGCAGGGAAAAGGAGTCATGCCTGATGGGACTT
CACGGTTCAGTACCATGGATGGGAGGCACATCTACCACTTTATGGGCTGT
TCGACCTTCGCAGAATATACAGTAGTGGCCGAGATCTCCTGTGCGGTGGT
CTCGGACAAGGCGCCGTTGGACAAGGTGTGCTTGTTTGGGTGCGGAGTGA
GCACAGGGCTAGGGGCGGTGCTCAAGACTTGCGCAGTGGAGGAGGGGGCG
ACGGTGGCGGTATTCGGCTTGGGGGCAGTGGGGCTGGCTGTCGTACAGGC
GGCCAAGATGAGGAAAGCGAGGCGGATCATTGCGATAGATATGAACGAGA
AGAAGTTCGAGATGGCGCGGCAGTTGGGGGCAACGGATTGTTTGAATCCT
TCTACATTTGGTGAGAAGCCGATTCAGACGGTGGTGGTGGAGATGACCAC
GTGGGGAGTGGACTACTCGTTTGACGCCACAGGAAACACGGAGGTGATGC
GGGCGGCTTTGGAGTGCGCGCATCGCGGGTGGGGGGTGAGTTGTGTGATC
GGCGTGGCGGCGAGTGGGAAGGTTATTCAGACAAGACCTTTTCAGCTGAT
CACAGGGAGGACATGGAAGGGGACAGCGTTTGGGGGATGGAAGAGTCGAG
TGGATGTGCCGATGCTGGTGCAGCAGTACCTGGGGGGGAGTTACCCATTG
ACCACTACGTGACACATGAGTATGACGGGGTGGACAAGATCAATGACGCG
ATTCACGCCTTGCATGAGGGAAACTGTTTGCGAGCGGTGGTGGCGTATGC
CACGCCTTGAGAGTAGAGAGTAGGTTCGAATAGGCTGAAAGGTTTAGGGT
TGCAGCAGTCAGATCAGTTGACAATATAGTAGTCGGCTGCGAAAGAGCGG
AAAAGGAAAGAATGATCTTCACAAGAGGATAAATACGAATCAGAGACAAC
CTCCCCCAACTTCTCATAGCGAGAGGAGCGAGAGGAGAAAGCGCCTTCGC
ACTTGTGCTGGCACACCGAGAGAGGCGGTGATCATACAAGAGGAAGAAAA
CAATAGTCTGAACTATCGAGCTGGTATTGGTAATGGTATGTACGTCTATG
CTATT
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Coding sequence (CDS) from alignment at chr24:204336..206390+

>NO24G00660.1 ID=NO24G00660.1|Name=NO24G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr24:204336..206390+ (Nannochloropsis oceanica)
ATGTCCAGTCCGCACGAAGGAAAGCCGATCGAGTGTAAAGCGGCCGTGGC
ATGGGAACCGAACAAGCCATTGGTTACCGAGACTATCCGCGTGGACCCAC
CCAAGGCAGGGGAAGTCCGGCTAAAGGTCATTGCCAATGCCTTGTGCCAT
ACCGACGTTTACACCTTGTCCGGGCAAGACCCCGAGGGTCTCTTCCCCTG
CATCCTAGGCCACGAAGCAGGGGCTATTGTCGAGAGCATTGGGGAGGGCG
TGACGTCCGTTAAGCCCGGCATGTACGTCATTCCGTGCTACACTCCGCAA
TGCCAAGAAGCCGGTTGCATCTACTGCCAATCCCCCAAGACGAATCTCTG
CCCTAAGATCAGGGGGACGCAGGGAAAAGGAGTCATGCCTGATGGGACTT
CACGGTTCAGTACCATGGATGGGAGGCACATCTACCACTTTATGGGCTGT
TCGACCTTCGCAGAATATACAGTAGTGGCCGAGATCTCCTGTGCGGTGGT
CTCGGACAAGGCGCCGTTGGACAAGGTGTGCTTGTTTGGGTGCGGAGTGA
GCACAGGGCTAGGGGCGGTGCTCAAGACTTGCGCAGTGGAGGAGGGGGCG
ACGGTGGCGGTATTCGGCTTGGGGGCAGTGGGGCTGGCTGTCGTACAGGC
GGCCAAGATGAGGAAAGCGAGGCGGATCATTGCGATAGATATGAACGAGA
AGAAGTTCGAGATGGCGCGGCAGTTGGGGGCAACGGATTGTTTGAATCCT
TCTACATTTGGTGAGAAGCCGATTCAGACGGTGGTGGTGGAGATGACCAC
GTGGGGAGTGGACTACTCGTTTGACGCCACAGGAAACACGGAGGTGATGC
GGGCGGCTTTGGAGTGCGCGCATCGCGGGTGGGGGGTGAGTTGTGTGATC
GGCGTGGCGGCGAGTGGGAAGGTTATTCAGACAAGACCTTTTCAGCTGAT
CACAGGGAGGACATGGAAGGGGACAGCGTTTGGGGGATGGAAGAGTCGAG
TGGATGTGCCGATGCTGGTGCAGCAGTACCTGGGGGGGAGTTACCCATTG
ACCACTACGTGA
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Synonyms
Publications