NO24G00580.1, NO24G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00580.1
Unique NameNO24G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr24:183212..184552 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:183212..184552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00580.1 vs.
Match: EWM21120.1 (hypothetical protein Naga_100041g26 [Nannochloropsis gaditana])

HSP 1 Score: 595.1 bits (1533), Expect = 1.800e-166
Identity = 310/398 (77.89%), Postives = 342/398 (85.93%), Query Frame = 0 
Query:   53 ASAPSQT-RRQSSSFLYPLTSLHAAADGAENDKEDANGGSSPSSLSSPFPDDRPLNSVEQRRIDRAAKTDKARKLSKNARLMDDFFGKRMGAGTVFYGESLSDLDDEAYAKKVEASNDNDARLEIKALRENPVVVVGATGKTGQWVVTDLLSKGFSVRAFVRNLDKAEDLFGWDGSNLDLFEGNVKDLSALTEVMKGALAVIYCAGSREVIGTNTFSQVDGLGVENAVKAAELSG---EGGVPSVRKFILLSSIGVSKPDGYGFVGKLLGDPLKAKARGEDAVRKGNLESYCIVRAGGLRDGDGTKRAIEIGQGDMFGKCGVSRLDVAQMLVQALVQDVNNVTFEVKNDDSRQEDQERLNNILSTPDQRQIVEYFLTEDAKDEEMWGQRLSALKPDVL 447
            AS PS   RR++ SF +            +ND    +  S PS  SSPFPDDRPLNSVEQRR+ RAAKTDKARKLSKNARLMDDFFGKR+G G+VFYGE LSDLDDE YA+KVEASNDND RLE++ALR+NPV+VVGATGKTGQWVVTDLLSKGFSVRAFVRNLDKAEDLFGWDGSNLD+FEGNVKDL++LTE  +GALAVIYCAGSRE+IG N F QVDGLGVENAVKAA+LSG    G  PSVRKFILLSSIGVS+P+ YGF+GKLLGDPL+AKARGE AVR+  LESYCIVR GGLRDGDGTKRAIEI QGD+FGKCGVSRLD+AQ+LVQ LVQDVNNVTFEVKNDDSR+EDQ RLN ILST DQRQIVEYFL EDAK+EEMW +RL ALKPD++
Sbjct:   33 ASPPSSVARRRALSFSFGGRDRCQYFMSTDNDNS-VSSDSEPSPNSSPFPDDRPLNSVEQRRVTRAAKTDKARKLSKNARLMDDFFGKRLGQGSVFYGERLSDLDDEEYARKVEASNDNDERLEVRALRDNPVLVVGATGKTGQWVVTDLLSKGFSVRAFVRNLDKAEDLFGWDGSNLDVFEGNVKDLASLTEATRGALAVIYCAGSREIIGPNAFQQVDGLGVENAVKAAQLSGGEEPGSEPSVRKFILLSSIGVSRPEEYGFLGKLLGDPLRAKARGEAAVRRSGLESYCIVRGGGLRDGDGTKRAIEIAQGDVFGKCGVSRLDLAQVLVQVLVQDVNNVTFEVKNDDSRREDQARLNEILSTADQRQIVEYFLREDAKEEEMWARRLQALKPDII 429
The following BLAST results are available for this feature:
BLAST of NO24G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21120.11.800e-16677.89hypothetical protein Naga_100041g26 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00580NO24G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00580.1NO24G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00580.1.cds1NO24G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00580.1 ID=NO24G00580.1|Name=NO24G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ATGGATACTTCGAGCAGCAGAAGACAAACCTACCGGCTGAGCTATCTAGT
CTTCCTTCTCCTGGCGACGTTTCTGCGGCACGTCGTACAGTCCTTTGTCC
TCCAAAGGCCCGCTACACGACGACCTCCCCTACAACAGACTGCCTCCCTC
TCTGTTGCCTCTGCCCCCTCCCAAACCCGCCGTCAGTCCTCCTCCTTCTT
GTACCCCTTAACCTCGCTTCATGCCGCCGCTGATGGCGCAGAGAATGACA
AAGAAGATGCCAACGGCGGCAGCTCCCCTTCATCTCTCTCCTCCCCCTTC
CCCGACGACCGGCCTTTAAACTCGGTGGAGCAACGGAGAATAGACCGGGC
CGCCAAGACGGACAAGGCCCGCAAGCTAAGTAAGAATGCGCGGTTGATGG
ACGACTTTTTTGGGAAGCGCATGGGGGCAGGCACGGTCTTTTATGGGGAG
AGCTTATCGGATCTGGATGATGAGGCCTATGCCAAAAAAGTTGAGGCAAG
TAACGACAATGACGCCCGATTAGAGATCAAGGCGCTGCGCGAGAACCCAG
TGGTGGTCGTAGGAGCGACGGGTAAGACGGGACAGTGGGTGGTTACTGAT
CTGTTGAGCAAGGGGTTTAGTGTGAGGGCGTTCGTCCGGAATTTGGACAA
GGCAGAGGATCTATTTGGTTGGGATGGTTCGAATCTGGATTTGTTTGAGG
GGAATGTCAAAGATTTGAGCGCGCTGACTGAAGTGATGAAGGGCGCGTTA
GCTGTTATATATTGCGCGGGGTCCCGGGAAGTGATTGGCACGAATACCTT
TTCGCAGGTTGATGGCCTGGGTGTCGAGAACGCGGTCAAGGCTGCTGAGC
TCTCCGGAGAGGGCGGGGTACCTTCAGTCCGCAAATTCATTTTGCTGTCG
AGCATCGGCGTCTCCAAACCGGACGGGTATGGTTTTGTAGGTAAGCTTCT
AGGGGACCCTTTGAAGGCCAAGGCGCGGGGGGAGGACGCGGTTCGAAAGG
GGAATTTGGAGTCGTATTGCATAGTGCGCGCCGGGGGTTTGAGGGACGGG
GATGGAACCAAGCGCGCGATCGAGATAGGGCAAGGGGACATGTTTGGGAA
GTGTGGGGTATCGCGGTTAGATGTGGCCCAGATGCTTGTGCAGGCATTGG
TGCAGGATGTGAATAATGTGACGTTTGAGGTAAAGAACGATGACAGTCGG
CAGGAGGACCAGGAGAGGTTAAATAACATTTTGTCAACGCCGGACCAGAG
GCAGATCGTCGAGTACTTTTTGACAGAGGACGCGAAGGACGAGGAGATGT
GGGGGCAGCGGTTGAGTGCGTTGAAGCCAGATGTGCTTTGA
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protein sequence of NO24G00580.1

>NO24G00580.1-protein ID=NO24G00580.1-protein|Name=NO24G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDTSSSRRQTYRLSYLVFLLLATFLRHVVQSFVLQRPATRRPPLQQTASL
SVASAPSQTRRQSSSFLYPLTSLHAAADGAENDKEDANGGSSPSSLSSPF
PDDRPLNSVEQRRIDRAAKTDKARKLSKNARLMDDFFGKRMGAGTVFYGE
SLSDLDDEAYAKKVEASNDNDARLEIKALRENPVVVVGATGKTGQWVVTD
LLSKGFSVRAFVRNLDKAEDLFGWDGSNLDLFEGNVKDLSALTEVMKGAL
AVIYCAGSREVIGTNTFSQVDGLGVENAVKAAELSGEGGVPSVRKFILLS
SIGVSKPDGYGFVGKLLGDPLKAKARGEDAVRKGNLESYCIVRAGGLRDG
DGTKRAIEIGQGDMFGKCGVSRLDVAQMLVQALVQDVNNVTFEVKNDDSR
QEDQERLNNILSTPDQRQIVEYFLTEDAKDEEMWGQRLSALKPDVL*
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mRNA from alignment at chr24:183212..184552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00580.1 ID=NO24G00580.1|Name=NO24G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr24:183212..184552- (Nannochloropsis oceanica)
ATGGATACTTCGAGCAGCAGAAGACAAACCTACCGGCTGAGCTATCTAGT
CTTCCTTCTCCTGGCGACGTTTCTGCGGCACGTCGTACAGTCCTTTGTCC
TCCAAAGGCCCGCTACACGACGACCTCCCCTACAACAGACTGCCTCCCTC
TCTGTTGCCTCTGCCCCCTCCCAAACCCGCCGTCAGTCCTCCTCCTTCTT
GTACCCCTTAACCTCGCTTCATGCCGCCGCTGATGGCGCAGAGAATGACA
AAGAAGATGCCAACGGCGGCAGCTCCCCTTCATCTCTCTCCTCCCCCTTC
CCCGACGACCGGCCTTTAAACTCGGTGGAGCAACGGAGAATAGACCGGGC
CGCCAAGACGGACAAGGCCCGCAAGCTAAGTAAGAATGCGCGGTTGATGG
ACGACTTTTTTGGGAAGCGCATGGGGGCAGGCACGGTCTTTTATGGGGAG
AGCTTATCGGATCTGGATGATGAGGCCTATGCCAAAAAAGTTGAGGCAAG
TAACGACAATGACGCCCGATTAGAGATCAAGGCGCTGCGCGAGAACCCAG
TGGTGGTCGTAGGAGCGACGGGTAAGACGGGACAGTGGGTGGTTACTGAT
CTGTTGAGCAAGGGGTTTAGTGTGAGGGCGTTCGTCCGGAATTTGGACAA
GGCAGAGGATCTATTTGGTTGGGATGGTTCGAATCTGGATTTGTTTGAGG
GGAATGTCAAAGATTTGAGCGCGCTGACTGAAGTGATGAAGGGCGCGTTA
GCTGTTATATATTGCGCGGGGTCCCGGGAAGTGATTGGCACGAATACCTT
TTCGCAGGTTGATGGCCTGGGTGTCGAGAACGCGGTCAAGGCTGCTGAGC
TCTCCGGAGAGGGCGGGGTACCTTCAGTCCGCAAATTCATTTTGCTGTCG
AGCATCGGCGTCTCCAAACCGGACGGGTATGGTTTTGTAGGTAAGCTTCT
AGGGGACCCTTTGAAGGCCAAGGCGCGGGGGGAGGACGCGGTTCGAAAGG
GGAATTTGGAGTCGTATTGCATAGTGCGCGCCGGGGGTTTGAGGGACGGG
GATGGAACCAAGCGCGCGATCGAGATAGGGCAAGGGGACATGTTTGGGAA
GTGTGGGGTATCGCGGTTAGATGTGGCCCAGATGCTTGTGCAGGCATTGG
TGCAGGATGTGAATAATGTGACGTTTGAGGTAAAGAACGATGACAGTCGG
CAGGAGGACCAGGAGAGGTTAAATAACATTTTGTCAACGCCGGACCAGAG
GCAGATCGTCGAGTACTTTTTGACAGAGGACGCGAAGGACGAGGAGATGT
GGGGGCAGCGGTTGAGTGCGTTGAAGCCAGATGTGCTTTGA
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Coding sequence (CDS) from alignment at chr24:183212..184552-

>NO24G00580.1 ID=NO24G00580.1|Name=NO24G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr24:183212..184552- (Nannochloropsis oceanica)
ATGGATACTTCGAGCAGCAGAAGACAAACCTACCGGCTGAGCTATCTAGT
CTTCCTTCTCCTGGCGACGTTTCTGCGGCACGTCGTACAGTCCTTTGTCC
TCCAAAGGCCCGCTACACGACGACCTCCCCTACAACAGACTGCCTCCCTC
TCTGTTGCCTCTGCCCCCTCCCAAACCCGCCGTCAGTCCTCCTCCTTCTT
GTACCCCTTAACCTCGCTTCATGCCGCCGCTGATGGCGCAGAGAATGACA
AAGAAGATGCCAACGGCGGCAGCTCCCCTTCATCTCTCTCCTCCCCCTTC
CCCGACGACCGGCCTTTAAACTCGGTGGAGCAACGGAGAATAGACCGGGC
CGCCAAGACGGACAAGGCCCGCAAGCTAAGTAAGAATGCGCGGTTGATGG
ACGACTTTTTTGGGAAGCGCATGGGGGCAGGCACGGTCTTTTATGGGGAG
AGCTTATCGGATCTGGATGATGAGGCCTATGCCAAAAAAGTTGAGGCAAG
TAACGACAATGACGCCCGATTAGAGATCAAGGCGCTGCGCGAGAACCCAG
TGGTGGTCGTAGGAGCGACGGGTAAGACGGGACAGTGGGTGGTTACTGAT
CTGTTGAGCAAGGGGTTTAGTGTGAGGGCGTTCGTCCGGAATTTGGACAA
GGCAGAGGATCTATTTGGTTGGGATGGTTCGAATCTGGATTTGTTTGAGG
GGAATGTCAAAGATTTGAGCGCGCTGACTGAAGTGATGAAGGGCGCGTTA
GCTGTTATATATTGCGCGGGGTCCCGGGAAGTGATTGGCACGAATACCTT
TTCGCAGGTTGATGGCCTGGGTGTCGAGAACGCGGTCAAGGCTGCTGAGC
TCTCCGGAGAGGGCGGGGTACCTTCAGTCCGCAAATTCATTTTGCTGTCG
AGCATCGGCGTCTCCAAACCGGACGGGTATGGTTTTGTAGGTAAGCTTCT
AGGGGACCCTTTGAAGGCCAAGGCGCGGGGGGAGGACGCGGTTCGAAAGG
GGAATTTGGAGTCGTATTGCATAGTGCGCGCCGGGGGTTTGAGGGACGGG
GATGGAACCAAGCGCGCGATCGAGATAGGGCAAGGGGACATGTTTGGGAA
GTGTGGGGTATCGCGGTTAGATGTGGCCCAGATGCTTGTGCAGGCATTGG
TGCAGGATGTGAATAATGTGACGTTTGAGGTAAAGAACGATGACAGTCGG
CAGGAGGACCAGGAGAGGTTAAATAACATTTTGTCAACGCCGGACCAGAG
GCAGATCGTCGAGTACTTTTTGACAGAGGACGCGAAGGACGAGGAGATGT
GGGGGCAGCGGTTGAGTGCGTTGAAGCCAGATGTGCTTTGA
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Synonyms
Publications