NO24G00510, NO24G00510 (gene) Nannochloropsis oceanica

Overview
NameNO24G00510
Unique NameNO24G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1694
Alignment locationchr24:163717..165410 -

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:163717..165410 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: EWM24313.1 (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 1.600e-78
Identity = 153/207 (73.91%), Postives = 168/207 (81.16%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALRK--SSNRXXXXXXXXXXXXXEKEGKLPAG----------TAEKEEGEGK 196
            MSSYENLSPQVITR+AREIQDLVRKP+PGIRL QNNCDNIAE+HAEIDGPEDTPYV+G+FHVKLVLSQDFPNSPPRG+FLT+IYHPNVSS GDICVNTLKRDW+P+ TLAHVLQVIRCLLIVPFPESSLNDEAGKQFM SY DYA+RARLLT+VHA RK   S+              EKE KL  G          + E+  GEG+
Sbjct:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMSLEKEVKLVEGEDAADGFSKKSVEESMGEGE 207
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BLAST of NO24G00510 vs. NCBI_GenBank
Match: CBJ28647.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 236.9 bits (603), Expect = 6.200e-59
Identity = 113/162 (69.75%), Postives = 128/162 (79.01%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALRKSSN 163
            +SS+EN+SPQVI+RV REIQDL R P  GIR +    D IAEIHAEI GP  TPY  GSFH+KLVLS DFP+SPPRGFFLTKIYHPNV+  GDICVNTLKRDWT   TL HVLQVIRCLLIVPFPESSLNDEAG+ FM SY +Y +R ++   VHA +  S+
Sbjct:   10 LSSFENISPQVISRVGREIQDLQRNPPDGIRFLPQEEDTIAEIHAEIKGPVGTPYDGGSFHIKLVLSNDFPHSPPRGFFLTKIYHPNVAPNGDICVNTLKRDWTAEVTLTHVLQVIRCLLIVPFPESSLNDEAGRLFMESYTEYERRVKVWVNVHASKSLSS 171
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: OQR83062.1 (ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 226.5 bits (576), Expect = 8.300e-56
Identity = 99/162 (61.11%), Postives = 132/162 (81.48%), Query Frame = 0 
Query:    2 SSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALRKSSNR 164
            S++EN SPQ++ RVA+E++ L   P  GIRL++ + D++AEIH EI GPE+TPYV G F VKL+L++ FP  PP+G FLTKI+HPN+++ GDICVNTLKRDW+    L+HVLQVIRCLLIVPFPESSLNDEAGK FM  YD+YA+RA++LT++HA++  + +
Sbjct:    7 SAHENFSPQILQRVAKEVRQLASSPPAGIRLLETDSDSLAEIHVEISGPEETPYVGGFFEVKLLLTEGFPTVPPKGVFLTKIFHPNIAANGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYARRAKILTSIHAIKSKAKK 168
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: XP_009837769.1 (hypothetical protein H257_12307 [Aphanomyces astaci] >ETV72983.1 hypothetical protein H257_12307 [Aphanomyces astaci])

HSP 1 Score: 221.1 bits (562), Expect = 3.500e-54
Identity = 101/156 (64.74%), Postives = 126/156 (80.77%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHA 157
            MS++EN SPQ+I RVA+EI+ L   P  GIR +  + +++AEIH E+ GPEDTPY  G F +KL+L++ FP  PP+G FLTKI+HPNV+S GDICVNTLKRDW+    L+HVLQVIRCLLIVPFPESSLNDEAGK FM  YD+YA+RAR+LT++HA
Sbjct:    2 MSAHENFSPQIIQRVAKEIRQLATNPPSGIRYLPQDDESLAEIHVELVGPEDTPYAGGFFEMKLLLTEGFPTVPPKGHFLTKIFHPNVASNGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYAQRARILTSIHA 157
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: XP_008611502.1 (ubiquitin-conjugating enzyme E2 S [Saprolegnia diclina VS20] >EQC35218.1 ubiquitin-conjugating enzyme E2 S [Saprolegnia diclina VS20])

HSP 1 Score: 219.2 bits (557), Expect = 1.300e-53
Identity = 99/158 (62.66%), Postives = 128/158 (81.01%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALR 159
            M+++EN SPQ++ RVA+E++ L   P  GIRL++   D++AEIH E+ GPE+TPYV G F VKL+L+  FP +PP+G FLTKI+HPN++S GDICVNTLKRDW+    L+HVLQVIRCLLIVPFPESSLNDEAGK FM  YD+YA+RA++LT +HA +
Sbjct:    1 MAAHENFSPQILQRVAKEVRQLATNPPEGIRLLEQ--DSLAEIHVELRGPEETPYVGGFFEVKLLLTDGFPTTPPKGVFLTKIFHPNIASNGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYARRAKILTDIHATK 156
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: XP_008873271.1 (hypothetical protein H310_09084 [Aphanomyces invadans] >ETV98396.1 hypothetical protein H310_09084 [Aphanomyces invadans])

HSP 1 Score: 218.4 bits (555), Expect = 2.300e-53
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHA 157
            MS++EN SPQ+I RVA+EI+ L   P  GIR +  + +++AEIH E+ GPEDTPY  G F +KL+L++ FP  PP+G FLTKI+HPNV++ GDICVNTLKRDW     L+HVLQVIRCLLIVPFPESSLNDEAGK FM  Y +YA+RAR+LTT+HA
Sbjct:    1 MSAHENFSPQIIQRVAKEIRQLATNPPAGIRYLPQDDESLAEIHVELVGPEDTPYAGGFFEMKLLLTEGFPTVPPKGHFLTKIFHPNVAANGDICVNTLKRDWCADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYSEYAQRARILTTIHA 156
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: XP_009520800.1 (hypothetical protein PHYSODRAFT_326520 [Phytophthora sojae] >EGZ25512.1 hypothetical protein PHYSODRAFT_326520 [Phytophthora sojae])

HSP 1 Score: 217.2 bits (552), Expect = 5.100e-53
Identity = 104/158 (65.82%), Postives = 125/158 (79.11%), Query Frame = 0 
Query:    5 ENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSS-TGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALRKSS 162
            ENL PQV  RVARE++ LV +P  GIR +  + + ++EIHAEI GPEDTPY  G F VKL L++ FP  PPRG FLTKI+HPNVS   GDICVNTLK+DW PT  LAHVLQV+RCLLIVPFPESSLNDEAGK F+ SYD+YA+RA+L T +HA ++S+
Sbjct:    8 ENLPPQVAQRVARELRKLVLQPLDGIRYLPQDEEQLSEIHAEIRGPEDTPYEGGYFTVKLTLTESFPEQPPRGVFLTKIFHPNVSQPAGDICVNTLKKDWKPTLGLAHVLQVVRCLLIVPFPESSLNDEAGKLFLDSYDEYARRAKLWTNIHAPKRSA 165
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: XP_012209423.1 (hypothetical protein SPRG_14896 [Saprolegnia parasitica CBS 223.65] >KDO19866.1 hypothetical protein SPRG_14896 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 217.2 bits (552), Expect = 5.100e-53
Identity = 98/158 (62.03%), Postives = 127/158 (80.38%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALR 159
            M+++EN SPQ++ RVA+E++ L   P  GIRL++   D++AEIH E+ GPE+TPYV G F VKL+L+  FP +PP+G FLTKI+HPN++  GDICVNTLKRDW+    L+HVLQVIRCLLIVPFPESSLNDEAGK FM  YD+YA+RA++LT +HA +
Sbjct:    1 MAAHENFSPQILQRVAKEVRQLATNPPDGIRLLEQ--DSLAEIHVELRGPEETPYVGGFFEVKLLLTDGFPTTPPKGVFLTKIFHPNIAPNGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYARRAKILTDIHATK 156
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: XP_008914917.1 (hypothetical protein PPTG_18635 [Phytophthora parasitica INRA-310] >ETI31849.1 hypothetical protein F443_21253 [Phytophthora parasitica P1569] >ETK72190.1 hypothetical protein L915_20669 [Phytophthora parasitica] >ETL25643.1 hypothetical protein L916_20531 [Phytophthora parasitica] >ETL78857.1 hypothetical protein L917_20405 [Phytophthora parasitica] >ETM32136.1 hypothetical protein L914_20410 [Phytophthora parasitica] >ETM99826.1 hypothetical protein PPTG_18635 [Phytophthora parasitica INRA-310] >ETO60566.1 hypothetical protein F444_21270 [Phytophthora parasitica P1976] >ETP01639.1 hypothetical protein F441_21138 [Phytophthora parasitica CJ01A1] >ETP29820.1 hypothetical protein F442_21084 [Phytophthora parasitica P10297] >KUF78609.1 Ubiquitin-conjugating enzyme E2 22 [Phytophthora nicotianae])

HSP 1 Score: 214.9 bits (546), Expect = 2.500e-52
Identity = 105/162 (64.81%), Postives = 125/162 (77.16%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSS-TGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALRKSS 162
            M + ENL PQV  RVARE++ LV +P  GIR +    + ++EIHAEI GPEDTPY  G F VKL L++ FP  PPRG FLTKI+HPNVS   GDICVNTLK+DW  T  LAHVLQVIRCLLIVPFPESSLNDEAGK F+ SYD+YA+RA+L T +HA ++S+
Sbjct:    1 MLTRENLPPQVAQRVARELRKLVLQPLDGIRYLPQEQEQLSEIHAEIRGPEDTPYHGGYFTVKLTLTESFPEQPPRGVFLTKIFHPNVSQPAGDICVNTLKKDWKATLGLAHVLQVIRCLLIVPFPESSLNDEAGKLFLDSYDEYARRAKLWTNIHAPKRSA 162
[Close]
BLAST of NO24G00510 vs. NCBI_GenBank
Match: OQS06918.1 (ubiquitin-conjugating enzyme E2 [Thraustotheca clavata])

HSP 1 Score: 214.2 bits (544), Expect = 4.300e-52
Identity = 95/158 (60.13%), Postives = 126/158 (79.75%), Query Frame = 0 
Query:    1 MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGPEDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLKRDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARLLTTVHALR 159
            MS++EN SPQ++ RVA+EI+ L   P  GIRL++ +  ++AEIH E+ GPE+TPYV G F VKLVL+  FP  PP+G FLTKI+HPN++S G+ICVNTLKRDW      +H+LQVIRCLLIVP+PESSLND+AGK FM  Y++YA+RA++LT++HA +
Sbjct:    1 MSTHENFSPQIVQRVAKEIRQLATNPPIGIRLLEQDDASLAEIHVEVTGPEETPYVGGFFEVKLVLTDGFPAVPPKGVFLTKIFHPNIASNGEICVNTLKRDWNADLDFSHILQVIRCLLIVPYPESSLNDKAGKLFMECYEEYARRAKILTSIHATK 158
The following BLAST results are available for this feature:
BLAST of NO24G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24313.11.600e-7873.91ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
CBJ28647.16.200e-5969.75conserved unknown protein [Ectocarpus siliculosus][more]
OQR83062.18.300e-5661.11ubiquitin-conjugating enzyme E2 [Achlya hypogyna][more]
XP_009837769.13.500e-5464.74hypothetical protein H257_12307 [Aphanomyces astac... [more]
XP_008611502.11.300e-5362.66ubiquitin-conjugating enzyme E2 S [Saprolegnia dic... [more]
XP_008873271.12.300e-5364.10hypothetical protein H310_09084 [Aphanomyces invad... [more]
XP_009520800.15.100e-5365.82hypothetical protein PHYSODRAFT_326520 [Phytophtho... [more]
XP_012209423.15.100e-5362.03hypothetical protein SPRG_14896 [Saprolegnia paras... [more]
XP_008914917.12.500e-5264.81hypothetical protein PPTG_18635 [Phytophthora para... [more]
OQS06918.14.300e-5260.13ubiquitin-conjugating enzyme E2 [Thraustotheca cla... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002890NSK002890Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00510.1NO24G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558401gene_7282Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g22gene6164Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00510.1NO24G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00510 ID=NO24G00510|Name=NO24G00510|organism=Nannochloropsis oceanica|type=gene|length=1694bp
ACAGGACTTTATTTTTGTCCGCTGCACGGCCACGTCATCCCAGCACGGTC
TCCTTCAGCCCCCGTGACACGTTCCAACCCCCTGGTTGTTGTTGACTCGG
GAGCGAGCGTGACAAATCAGTTCAGAGGTTCCACACCACCACTCACACTG
CCGGCGCGACCACCACACCCCCGTTAGCATGTCGTCGTACGAGAATCTGT
CCCCCCAAGTCATTACGCGGGTAGCCCGAGAGATCCAAGACCTAGTCCGC
AAGCCCACGCCTGgtaagtcctggtatacttccaggtggggatatcatta
gccctcaaccaaggcgataaggagggaagagaagagacatgaaagcaggg
tcgggggacaggtgaagcaaagacaaggcgcaaatggggagatctgcata
tttcctgtcgagcagtgtggttcggcggctcgtgacattccacgtgaatc
cagaaggactacgtccctctccccctcccccactctctccacaaacatct
tatgcttccctctctgacgcacacaataaattttaaacagGCATTCGACT
CATGCAAAACAACTGCGACAATATTGCGGAGATTCACGCCGAGATTGATG
GGCCTGgtacgtgctgttgtcgctgtccctccctccctcttttctcccgt
cctcctctgctctttcgttgtcctttcctttaccaaggttgagccctcac
attattctttatacgtcacattgtgtgcgttgcttgaaccaatccacccg
ctgctcctcttatccttcctccctccctccctccctccctcccccggccc
ctcccagAGGACACCCCTTACGTAGAGGGCAGCTTCCACGTGAAGCTCGT
CCTCAGCCAAGACTTCCCCAATTCTCCTCCTCGCGGGTTTTTTCTCACTA
AGATTTACCACCCGAACGTTAGCAGCACGGGCGACATTTGCGTGAATACG
TTGAAGAGAGACTGGACCCCCACTACCACCTTGGCCCATGTCCTGCAGgt
aagccggcacgccttacactctctccctcccttgctccctccctcccctc
ctttctccctctgtttatgtatgcactgagaaggatcttagaaagtggca
cacaagcactagtctggcccttgcctcaagcgtgatgacatgaattcgaa
atgtttaatgaacccctcccttcctccctccctctctccctcccaaagGT
GATACGCTGTCTCCTAATCGTACCCTTTCCCGAGAGCTCTCTCAACGACG
AAGCTGGCAAGCAGTTCATGACATCTTACGACGACTACGCCAAGCGTGCT
CGGCTCCTTACCACGGTCCACGCCCTCCGGAAGAGTAGCAACAGAAACAG
CAGCACCAGCAGGAGTAGCAGCAAGAGCAGTGTGGAGAAAGAGGGGAAGC
TACCTGCAGGCACAGCGGAGAAGGAAGAGGGGGAGGGGAAGGAAGGGAGG
AACGGGGCGAAGGAGGGGGCGAGGGAGGGGGCGAGGGAGGGGGGGCGGGA
GTGCTGGGGTCTCCCAACGTCGTGGGCCTGACGAAGAGAAAAGTGCATCC
TAACCAAAAGGAGACGGCCCTGTCAGTTGACAAGCGATTGAAGAAGAAGG
GATTAAAGCGACTCTAGGAAAACGACGCGAAAAGGAGGAGAAGACGTGCT
GCCGCGGGATGGGTCGCTGCTCATTCCTCCGTTGTGTGGGTGTT
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protein sequence of NO24G00510.1

>NO24G00510.1-protein ID=NO24G00510.1-protein|Name=NO24G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MSSYENLSPQVITRVAREIQDLVRKPTPGIRLMQNNCDNIAEIHAEIDGP
EDTPYVEGSFHVKLVLSQDFPNSPPRGFFLTKIYHPNVSSTGDICVNTLK
RDWTPTTTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMTSYDDYAKRARL
LTTVHALRKSSNRNSSTSRSSSKSSVEKEGKLPAGTAEKEEGEGKEGRNG
AKEGAREGAREGGRECWGLPTSWA*
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Synonyms
Publications