NO24G00440, NO24G00440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G00440 vs. NCBI_GenBank
Match: EWM24316.1 (ferredoxin (2fe-2s) [Nannochloropsis gaditana]) HSP 1 Score: 291.6 bits (745), Expect = 2.200e-75 Identity = 137/192 (71.35%), Postives = 160/192 (83.33%), Query Frame = 0 Query: 20 LAMLLIQTPNPSQAFLLPKIIRQGRVGDQQPQLRLRHAQIYSPTSLYALEPKRLTITEQLKFSPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYK 212 L ++L+ + SQAFL P I Q + + + + +SP +L+A PKRLT+TEQL+ SPNRWKRNG+PLEPG GGIWPG PDAK YKVTV+DPR+KTNYTMDVPEDRYIFFAFED+GVDLP++NGKRMCRNGCCTTCAVKM EGKVKMEAALGLLR+MK GYAL+CCSLP+SDIVCELQDEDEVY+ Sbjct: 6 LLLVLLLLSSTSQAFLQPAI--QHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYE 195
BLAST of NO24G00440 vs. NCBI_GenBank
Match: CBJ27792.1 (ferredoxin [Ectocarpus siliculosus]) HSP 1 Score: 219.2 bits (557), Expect = 1.400e-53 Identity = 100/155 (64.52%), Postives = 126/155 (81.29%), Query Frame = 0 Query: 79 LKFSPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGG-FLPED 233 +K+SPN+W + + + PG+GGIWPG+PDA+T+ VT ++ + + DVP DRYI+FA EDAGVD+P++N KRMCRNGCCTTCAVK+ EGKVK E ALGLL+++KQ GYALTCCS PKSD+V LQ+ED+VY KQ+G FEGGGVEWGG FL ED Sbjct: 80 VKYSPNKW-WDEDDIVPGFGGIWPGDPDAETHHVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 233
BLAST of NO24G00440 vs. NCBI_GenBank
Match: CEL97897.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 189.1 bits (479), Expect = 1.500e-44 Identity = 85/138 (61.59%), Postives = 113/138 (81.88%), Query Frame = 0 Query: 82 SPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFE 220 +P +W+ G+ ++P GG WPG+P+AKTYKVT++DP S +T DVPEDRYIFF+FE++ P+ N K+MCRNGCCTTCAV++ EG+VKM+ +GL REM++AGYALTC S P+SD+V ELQDEDEVYKKQ+G+TF+ Sbjct: 133 TPMKWEM-GDRIKPYKGGPWPGDPNAKTYKVTIIDPVSGERHTQDVPEDRYIFFSFEESRNLPPIKNIKKMCRNGCCTTCAVRVREGEVKMDPQIGLTREMERAGYALTCVSYPRSDVVLELQDEDEVYKKQFGDTFD 269
BLAST of NO24G00440 vs. NCBI_GenBank
Match: XP_005718525.1 (unnamed protein product [Chondrus crispus] >CDF38620.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 164.5 bits (415), Expect = 4.000e-37 Identity = 78/135 (57.78%), Postives = 92/135 (68.15%), Query Frame = 0 Query: 99 GIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD 234 G PGNP+AKT+ VTV DP++ VPEDRY++ D D+P C NGCCTTCAVK+T G+V ALGLL+EM+ YAL C S PKSDI C LQDEDEVY KQ+G +FE GGVEWGG +PEDD Sbjct: 113 GSLPGNPNAKTHTVTVHDPKNDRVLKYQVPEDRYVWHGMSDQDADIP-----SSCLNGCCTTCAVKITSGEVDQSEALGLLKEMRDQDYALLCVSYPKSDIECVLQDEDEVYVKQFGSSFESGGVEWGGVVPEDD 242
BLAST of NO24G00440 vs. NCBI_GenBank
Match: OSX70086.1 (hypothetical protein BU14_0924s0003 [Porphyra umbilicalis]) HSP 1 Score: 154.5 bits (389), Expect = 4.200e-34 Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 0 Query: 92 PLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDA-GVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGG 228 P+ G PG+PDA T+ VTV+D T+ VPEDRYI+ A E+A G LP CR+GCCTTCAV++T G+V ALGLLR+M++ GYAL C S P+SDI C LQ+EDEVY KQ+G+TFE GGVEWGG Sbjct: 47 PVVAALDGSLPGSPDAPTHTVTVLDGAGAVVQTLAVPEDRYIWHAMEEASGGRLP-----SSCRHGCCTTCAVRVTSGEVDQREALGLLRQMREVGYALLCVSKPRSDITCVLQEEDEVYVKQFGDTFEQGGVEWGG 178
BLAST of NO24G00440 vs. NCBI_GenBank
Match: XP_005704666.1 (ferredoxin [Galdieria sulphuraria] >EME28146.1 ferredoxin [Galdieria sulphuraria]) HSP 1 Score: 150.6 bits (379), Expect = 6.000e-33 Identity = 78/175 (44.57%), Postives = 108/175 (61.71%), Query Frame = 0 Query: 59 IYSPTSLYALEPKRLTITEQLKFSPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD 234 +Y + Y +RLT Q S W +GE G+P+A+ Y+VTV + R+ Y DVP DRYI+++F + G++LP C NGCCTTCA ++ G+++ ALGLL+EMK YAL C S PKSD+ LQ+EDEVY +Q+G++FE GGVE+GG +PEDD Sbjct: 28 LYGSSRYYTRILRRLTRNCQQYLS---WTCHGETF---------GDPNARKYRVTVRNQRTGECYIRDVPTDRYIWWSFLEQGIELP-----SSCVNGCCTTCACRVVSGRIEQPLALGLLKEMKNKRYALLCVSYPKSDVEVVLQEEDEVYCRQFGDSFESGGVEYGGIIPEDD 185
BLAST of NO24G00440 vs. NCBI_GenBank
Match: XP_005536691.1 (similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >XP_005538534.1 probable ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM80655.1 similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM82498.1 probable ferredoxin [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 144.4 bits (363), Expect = 4.300e-31 Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 0 Query: 98 GGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD 234 GG PG+P A + VT+++ R + T+ VPEDRYI++ F + G +LP C NGCCTTCA K+ G ++ ALGL RE + GY L C S P+S +V LQ EDEVY++QW TFE GG WGG +PE+D Sbjct: 61 GGALPGDPAAPKHNVTILNYRDDESLTLAVPEDRYIWWYFRENGYELP-----SSCLNGCCTTCAAKIVRGSLEQPEALGLTREFRDKGYCLLCVSYPRSALVLVLQSEDEVYEQQWATTFESGGKRWGGLIPEED 191
BLAST of NO24G00440 vs. NCBI_GenBank
Match: WP_096581063.1 (MULTISPECIES: ferredoxin [Nostocales] >BAY33718.1 2Fe-2S ferredoxin [Nostoc carneum NIES-2107] >BAZ01474.1 2Fe-2S ferredoxin [Tolypothrix tenuis PCC 7101] >BAZ74603.1 2Fe-2S ferredoxin [Aulosira laxa NIES-50]) HSP 1 Score: 119.8 bits (299), Expect = 1.100e-23 Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 0 Query: 107 AKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPED 233 ++TYK+ V D + YT+ VPEDRYI + E G +LP CRNG CTTCAV++ G++ A+GL E+++ GYAL C S P+SDI E QDEDEVY+ Q+G F G V G L ED Sbjct: 2 SQTYKIRVRDRNTGKEYTLQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYELQFGRFFARGKVRAGLPLDED 122
BLAST of NO24G00440 vs. NCBI_GenBank
Match: WP_045867930.1 (MULTISPECIES: ferredoxin [Nostocales] >EKF04715.1 ferredoxin [Tolypothrix sp. PCC 7601] >BAY92080.1 2Fe-2S ferredoxin [Fremyella diplosiphon NIES-3275]) HSP 1 Score: 119.4 bits (298), Expect = 1.500e-23 Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 0 Query: 107 AKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPED 233 ++TYK+ V D + YT+ VPEDRYI + E G +LP CRNG CTTCAV++ G++ A+GL E+++ GYAL C S P+SDI E QDEDEVY+ Q+G F G V G L ED Sbjct: 2 SQTYKIRVRDRNTGKEYTIQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYELQFGRFFARGKVRAGLPLDED 122
BLAST of NO24G00440 vs. NCBI_GenBank
Match: WP_086685418.1 (ferredoxin [Nostoc sp. T09] >OUL36426.1 ferredoxin [Nostoc sp. T09]) HSP 1 Score: 119.0 bits (297), Expect = 2.000e-23 Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 0 Query: 107 AKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPED 233 ++TY + V D S YT++VPEDRYI + E G +LP CRNG CTTCAV++ G++ A+GL E+++ GYAL C S P+SD+ E QDEDEVY+ Q+G F G V+ G L ED Sbjct: 2 SRTYTIRVHDRNSGKEYTLEVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDLEVETQDEDEVYELQFGRYFARGKVKAGLPLDED 122 The following BLAST results are available for this feature:
BLAST of NO24G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00440 ID=NO24G00440|Name=NO24G00440|organism=Nannochloropsis oceanica|type=gene|length=2399bpback to top protein sequence of NO24G00440.1 >NO24G00440.1-protein ID=NO24G00440.1-protein|Name=NO24G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bpback to top Synonyms
Publications
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