NO24G00390.5, NO24G00390.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00390.5
Unique NameNO24G00390.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2238
Alignment locationchr24:136947..139751 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:136947..139751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00390.5 vs.
Match: XP_005852690.1 (gtp-binding protein [Nannochloropsis gaditana CCMP526]; EKU23143.1 gtp-binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 591.3 bits (1523), Expect = 2.100e-165
Identity = 292/363 (80.44%), Postives = 324/363 (89.26%), Query Frame = 0 
Query:    1 MHILDVSGTTNEKGETTVGYDPINDAEWLHGEVHAWVFNNLWKKWSSVARRHAATKASVGPTLLGQLSGYGANPAVINAVLDKMGVRDPVDLGEWDEDQVKALVEAFLLVRFPTILLLNKADQAGDTDKNISRIVERYEASKCFVASAGAECFLKICRQKNVIKYQAGASNFETIEDIEDDLDFRKARGETVPSLEEATAGLEPPDGKTKKRLEKIRDMVLFRYQSTGVWAAIQAAVDLQEPVVVYPVKSLSNFATAADGGGVFGNAMLVKPGSTVRSVVGYVASGMMDLLQYAELLEEGGNRRRVGEDYVLTGKNNIIKFFFRPVEERQVQGGSSQGKEKEQQKARPKKDKGVEGENGSGEG 364
            MHILDVSGTTNEKGE TVGYDP+NDA+WLHGE+HAWVFNNLW++W+SV RRH ATK+S   TLLGQLSGYGANP +IN VLDK+GVRDPVDLGEW+E++VKALVEAFL VRFPTILLLNKADQAGDTDKNISRIVERY+ASKCFVASAGAECFLKICRQK VI+YQAGA NFETIEDI+DDLDFRKARGE VP++EE TAGLE PD KTKKRLEKIRDMVLFRY  TGVWAA+QAAVDLQ PVV YPVKSLSNF+T ADGG VFGNA+LV+PGSTVRSV G+VASGM++ LQYAELLEEGG RRRVGED+VLTG+ NIIKFF+RPVEER    G SQ KEK+Q K++ K DK   G++G  EG
Sbjct:  445 MHILDVSGTTNEKGEATVGYDPVNDAKWLHGEIHAWVFNNLWRRWTSVVRRHTATKSSAASTLLGQLSGYGANPVMINKVLDKLGVRDPVDLGEWEEEEVKALVEAFLSVRFPTILLLNKADQAGDTDKNISRIVERYDASKCFVASAGAECFLKICRQKKVIRYQAGAGNFETIEDIQDDLDFRKARGEHVPAMEEETAGLEMPDSKTKKRLEKIRDMVLFRYGGTGVWAAVQAAVDLQHPVVCYPVKSLSNFSTDADGGRVFGNAILVRPGSTVRSVAGHVASGMVEYLQYAELLEEGGIRRRVGEDHVLTGQKNIIKFFYRPVEERPSHTGHSQSKEKDQSKSKSKSDK--TGDSGDCEG 805
The following BLAST results are available for this feature:
BLAST of NO24G00390.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852690.12.100e-16580.44gtp-binding protein [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00390NO24G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00390.5NO24G00390.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00390.5.cds1NO24G00390.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00390.5.cds2NO24G00390.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00390.5.cds3NO24G00390.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00390.5.cds4NO24G00390.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00390.5 ID=NO24G00390.5|Name=NO24G00390.5|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp
CGGAAAGTTTGTCTAGGTGGAGGGGTGGGAGGTTGACAAAGTAGCGGGGC
CTCATGTGACATCTCACAACCACCACCACATCACACAACATGACAATACA
GCGCGGTCGTAAACTGACTCCAAATCATGCCACGATGTCTAGGTGCTGTC
GGTCACAACTTCTCCTCTTGAAGACTATCAAGCAATGCTTCACCACTTTC
CATCCGCACACCAACCTCTGGCACCACCATACACGATGCAAACAGTCACA
GGGAGGAGGAAGAGGCGCAAGAGGATGGAGGTGATTATTGGCTGCGTGGG
CAAGCCCAGTGTGGGCAAGAGTACATTTTTCAATGCCGTCAGTGGGGGCC
AGGCCAAAACGGGTACGTAGAGGGTCTAAGCTAATAGGAGGGCAGGAGGG
AGGGTGACACGAAGGGTTGCGTGGGAGGATGAGATCAATGGATTGGATAA
AAATCTAATCTGATTGGTACTGGCGTCCCAAGCCGTGACGTCTACGTCTC
TCACCAGTGTGCGCTTTATTTTATCATTTATTTCATGCTATCACGTCATC
TGCCTCTCCTTCCCTTTGCCCACCCTCCGCCTCCAAGGCAACTTCCCTTT
CACGACTATCGAGCCTAATACCGGAGTGACCTTCTACCGAGTCCCCTGCC
CTTGTGTCTCCCATGGCAAGGTGAAGGAATGCAAGCCCAAGTACGGCCGG
TGCATGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGG
TTTGGTGCCGGGAGCGTCGGAGGTGAGGGAAGGAGGGGGGAAGCAATGGA
GGAAGGGACGAATGGAAAGAGGACACAGAGATAGGAAGAGAGGGGGCTCT
GCGTGGAGGGGAGATTACATATGCTTAAAGCATTTATTATGATCCTGCTT
ATATGAAGAGAAGTGCATAACCAACCGTGTTTATTTTCACGTTTTCCCCT
TCCCCCATTCCTTTTTTTCTATTGCCTGACACCAGGGGGCGGGATTGGGC
AATAAGTTTCTCGATGACTTGCGCCATGCCGACGTACTCATGCACATCCT
TGACGTCTCTGGAACGACCAACGAAAAAGGCGAGACCACCGTCGGTTACG
ACCCGATTAATGACGCGGAATGGTTGCATGGGGAGGTCCACGCGTGGGTC
TTCAACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGC
GACCAAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATTGTCCGGGTATG
GAGCCAATCCCGCGGTGATTAATGCAGTTCTGGATAAGATGGGTGTGCGG
GACCCTGTGGACTTGGGCGAATGGGACGAGGACCAAGTCAAGGCGCTTGT
AGAAGCATTTTTGCTTGTGCGCTTTCCGACGATCCTCTTACTCAACAAGG
CCGATCAGGCGGGAGATACTGACAAGAACATCTCTCGGATCGTCGAGCGG
TACGAGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCT
CAAGATATGCCGACAAAAAAATGTGATCAAATACCAGGCGGGTGCTAGCA
ATTTTGAGACGATCGAGGACATTGAGGATGATTTGGACTTTCGCAAGGCA
CGTGGCGAGACCGTCCCTTCGCTAGAGGAAGCCACAGCAGGTTTGGAACC
ACCCGACGGCAAGACTAAGAAACGCCTCGAGAAAATTCGAGACATGGTCC
TCTTTCGGTATCAAAGCACAGGAGTCTGGGCCGCTATCCAGGCTGCAGTG
GATTTGCAAGAGCCTGTGGTTGTATACCCCGTCAAGTCCTTGAGCAATTT
CGCAACAGCAGCGGACGGAGGCGGGGTGTTTGGTAACGCCATGTTGGTGA
AACCGGGTTCGACGGTTCGCTCGGTAGTGGGATACGTGGCCTCAGGTATG
ATGGACTTATTGCAGTATGCAGAACTACTGGAAGAGGGGGGTAATCGGCG
GCGCGTCGGGGAGGATTATGTGCTGACAGGCAAGAATAACATCATCAAGT
TCTTCTTTCGCCCTGTCGAGGAACGACAAGTGCAAGGGGGGTCGTCGCAA
GGCAAAGAGAAGGAGCAACAGAAGGCGAGACCAAAGAAAGACAAAGGCGT
GGAGGGAGAGAATGGGAGTGGGGAGGGTGGCGAGATGTAAAAATAGAAAC
AAAGTACCCAGCAGAGGCATAGAAAACAAATGGACATGCCTTTATTTGTT
TGTTGGCGATTCAATTATCCTCACGCGGCAAAGAAAAC
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protein sequence of NO24G00390.5

>NO24G00390.5-protein ID=NO24G00390.5-protein|Name=NO24G00390.5|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MHILDVSGTTNEKGETTVGYDPINDAEWLHGEVHAWVFNNLWKKWSSVAR
RHAATKASVGPTLLGQLSGYGANPAVINAVLDKMGVRDPVDLGEWDEDQV
KALVEAFLLVRFPTILLLNKADQAGDTDKNISRIVERYEASKCFVASAGA
ECFLKICRQKNVIKYQAGASNFETIEDIEDDLDFRKARGETVPSLEEATA
GLEPPDGKTKKRLEKIRDMVLFRYQSTGVWAAIQAAVDLQEPVVVYPVKS
LSNFATAADGGGVFGNAMLVKPGSTVRSVVGYVASGMMDLLQYAELLEEG
GNRRRVGEDYVLTGKNNIIKFFFRPVEERQVQGGSSQGKEKEQQKARPKK
DKGVEGENGSGEGGEM*
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mRNA from alignment at chr24:136947..139751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00390.5 ID=NO24G00390.5|Name=NO24G00390.5|organism=Nannochloropsis oceanica|type=mRNA|length=2805bp|location=Sequence derived from alignment at chr24:136947..139751- (Nannochloropsis oceanica)
CGGAAAGTTTGTCTAGGTGGAGGGGTGGGAGGTTGACAAAGTAGCGGGGC
CTCATGTGACATCTCACAACCACCACCACATCACACAACATGACAATACA
GCGCGGTCGTAAACTGACTCCAAATCATGCCACGATGTCTAGGTGCTGTC
GGTCACAACTTCTCCTCTTGAAGACTATCAAGCAATGCTTCACCACTTTC
CATCCGCACACCAACCTCTGGCACCACCATACACGATGCAAACAGTCACA
GGGAGGAGGAAGAGGCGCAAGAGGATGGAGGTGATTATTGGCTGCGTGGG
CAAGCCCAGTGTGGGCAAGAGTACATTTTTCAATGCCGTCAGTGGGGGCC
AGGCCAAAACGGGTACGTAGAGGGTCTAAGCTAATAGGAGGGCAGGAGGG
AGGGTGACACGAAGGGTTGCGTGGGAGGATGAGATCAATGGATTGGATAA
AAATCTAATCTGATTGGTACTGGCGTCCCAAGCCGTGACGTCTACGTCTC
TCACCAGTGTGCGCTTTATTTTATCATTTATTTCATGCTATCACGTCATC
TGCCTCTCCTTCCCTTTGCCCACCCTCCGCCTCCAAGGCAACTTCCCTTT
CACGACTATCGAGGTAAGCCATGTCCCTCTAGAAAAAGCAGGAGTAGATG
GGAGTAACTAGATCTATGTTTATCTCCCTCTTTGCCTCGACTGACACAAA
CACACACAGCCTAATACCGGAGTGACCTTCTACCGAGTCCCCTGCCCTTG
TGTCTCCCATGGCAAGGTGAAGGAATGCAAGCCCAAGTACGGCCGGTGCA
TGAATGGCACACGACTCATTCCAGTCAAGCTTTTGGACGTGGCGGGTTTG
GTGCCGGGAGCGTCGGAGGTGAGGGAAGGAGGGGGGAAGCAATGGAGGAA
GGGACGAATGGAAAGAGGACACAGAGATAGGAAGAGAGGGGGCTCTGCGT
GGAGGGGAGATTACATATGCTTAAAGCATTTATTATGATCCTGCTTATAT
GAAGAGAAGTGCATAACCAACCGTGTTTATTTTCACGTTTTCCCCTTCCC
CCATTCCTTTTTTTCTATTGCCTGACACCAGGGGGCGGGATTGGGCAATA
AGTTTCTCGATGACTTGCGCCATGCCGACGTACTCATGCACATCCTTGAC
GTCTCTGGAACGACCAACGAAAAAGGCGAGACCACCGTCGGTTACGACCC
GATTAATGACGCGGAATGGTTGCATGGGGAGGTCCACGCGTGGGTCTTCA
ACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGGCGGCACGCGGCGACC
AAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATTGTCCGGGTATGGTAA
GTGAAGGGCTTTAGGTGGAAAGGTATACAGGAAAGAAGGAGAAGGATGCC
AAGTTTGGTCCTGGTCGGCCAGATTCGCGCGCCCTTCGTCTTGTGAGCCT
GTAGAAGAATGCGGTCGAAAAAGAATCACGATTCCGCCTGTTTTATTTAT
CTATATTTCATCACAGGAGCCAATCCCGCGGTGATTAATGCAGTTCTGGA
TAAGATGGGTGTGCGGGACCCTGTGGACTTGGGCGAATGGGACGAGGACC
AAGTCAAGGCGCTTGTAGAAGCATTTTTGCTTGTGCGCTTTCCGACGATC
CTCTTACTCAACAAGGCCGATCAGGTATGTCTTGCCATGTTCTAATGGTC
GGTAAGCCTGTGACTGTTTCTTATTGACGTTCTCAATCCTCCGTCACACT
GCAGGCGGGAGATACTGACAAGAACATCTCTCGGATCGTCGAGCGGTACG
AGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCCGAGTGCTTTCTCAAG
ATATGCCGACAAAAAAATGTGATCAAATACCAGGCGGGTGCTAGCAATTT
TGAGACGATCGAGGACATTGAGGATGATTTGGACTTTCGCAAGTATGTCT
TTGGGGTTTAGGGGAAAGGGAAAGGACTCTTCTGTGTGGGAGAGGCGTTA
CGCGCTACGACTTGTGTATACGTGTGCGTGAGTGTATATTTGTGTATGCT
TTACTCTTACTATCCAACTGTGAGTCTTTTTCTTTTTCTAGCCGCTTGTA
CATCGAAGTCTTTTTGCATGGACTTACTCACGGCCCCCACACCTCGCTCG
CAAACACATTCAGGGCACGTGGCGAGACCGTCCCTTCGCTAGAGGAAGCC
ACAGCAGGTTTGGAACCACCCGACGGCAAGACTAAGAAACGCCTCGAGAA
AATTCGAGACATGGTCCTCTTTCGGTATCAAAGCACAGGAGTCTGGGCCG
CTATCCAGGCTGCAGTGGATTTGCAAGAGCCTGTGGTTGTATACCCCGTC
AAGTCCTTGAGCAATTTCGCAACAGCAGCGGACGGAGGCGGGGTGTTTGG
TAACGCCATGTTGGTGAAACCGGGTTCGACGGTTCGCTCGGTAGTGGGAT
ACGTGGCCTCAGGTATGATGGACTTATTGCAGTATGCAGAACTACTGGAA
GAGGGGGGTAATCGGCGGCGCGTCGGGGAGGATTATGTGCTGACAGGCAA
GAATAACATCATCAAGTTCTTCTTTCGCCCTGTCGAGGAACGACAAGTGC
AAGGGGGGTCGTCGCAAGGCAAAGAGAAGGAGCAACAGAAGGCGAGACCA
AAGAAAGACAAAGGCGTGGAGGGAGAGAATGGGAGTGGGGAGGGTGGCGA
GATGTAAAAATAGAAACAAAGTACCCAGCAGAGGCATAGAAAACAAATGG
ACATGCCTTTATTTGTTTGTTGGCGATTCAATTATCCTCACGCGGCAAAG
AAAAC
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Coding sequence (CDS) from alignment at chr24:136947..139751-

>NO24G00390.5 ID=NO24G00390.5|Name=NO24G00390.5|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr24:136947..139751- (Nannochloropsis oceanica)
ATGCACATCCTTGACGTCTCTGGAACGACCAACGAAAAAGGCGAGACCAC
CGTCGGTTACGACCCGATTAATGACGCGGAATGGTTGCATGGGGAGGTCC
ACGCGTGGGTCTTCAACAATCTGTGGAAGAAATGGTCGAGTGTCGCAAGG
CGGCACGCGGCGACCAAGGCCTCGGTGGGCCCGACGTTGTTGGGGCAATT
GTCCGGGTATGGAGCCAATCCCGCGGTGATTAATGCAGTTCTGGATAAGA
TGGGTGTGCGGGACCCTGTGGACTTGGGCGAATGGGACGAGGACCAAGTC
AAGGCGCTTGTAGAAGCATTTTTGCTTGTGCGCTTTCCGACGATCCTCTT
ACTCAACAAGGCCGATCAGGCGGGAGATACTGACAAGAACATCTCTCGGA
TCGTCGAGCGGTACGAGGCCTCGAAATGCTTTGTTGCCAGCGCGGGCGCC
GAGTGCTTTCTCAAGATATGCCGACAAAAAAATGTGATCAAATACCAGGC
GGGTGCTAGCAATTTTGAGACGATCGAGGACATTGAGGATGATTTGGACT
TTCGCAAGGCACGTGGCGAGACCGTCCCTTCGCTAGAGGAAGCCACAGCA
GGTTTGGAACCACCCGACGGCAAGACTAAGAAACGCCTCGAGAAAATTCG
AGACATGGTCCTCTTTCGGTATCAAAGCACAGGAGTCTGGGCCGCTATCC
AGGCTGCAGTGGATTTGCAAGAGCCTGTGGTTGTATACCCCGTCAAGTCC
TTGAGCAATTTCGCAACAGCAGCGGACGGAGGCGGGGTGTTTGGTAACGC
CATGTTGGTGAAACCGGGTTCGACGGTTCGCTCGGTAGTGGGATACGTGG
CCTCAGGTATGATGGACTTATTGCAGTATGCAGAACTACTGGAAGAGGGG
GGTAATCGGCGGCGCGTCGGGGAGGATTATGTGCTGACAGGCAAGAATAA
CATCATCAAGTTCTTCTTTCGCCCTGTCGAGGAACGACAAGTGCAAGGGG
GGTCGTCGCAAGGCAAAGAGAAGGAGCAACAGAAGGCGAGACCAAAGAAA
GACAAAGGCGTGGAGGGAGAGAATGGGAGTGGGGAGGGTGGCGAGATGTA
A
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Synonyms
Publications