NO23G01920, NO23G01920 (gene) Nannochloropsis oceanica

Overview
NameNO23G01920
Unique NameNO23G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3291
Alignment locationchr23:693571..696861 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:693571..696861 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032751Fuseless
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO23G01920 vs. NCBI_GenBank
Match: EWM27848.1 (hypothetical protein Naga_100318g2 [Nannochloropsis gaditana])

HSP 1 Score: 709.5 bits (1830), Expect = 1.400e-200
Identity = 409/757 (54.03%), Postives = 483/757 (63.80%), Query Frame = 0 
Query:   75 TTATTDRWAMEAAAQELETRLANLRQYSNWRFNTRQYPSSPALESQHALWALRQTASGGLSVVLPTTM-EGEVDEDGSFHLHRGKSLSTAIDEIQGLMSRRASRAWTRSATIAGRSNVVPSSSSSFSFGRSIPSFARRRQPHGEGGGGRNERVSLGPGIGSSTGRGVSFHHETQGVGTVGGKEEGEEGRNTSRMSSSGETEAAVEGLDSREAQPEQQEHLGQDRQSLLHASLLSSKSPPLWTTWERLAWTGGDYLMSLLVFVTLSITWWRGAWNLLDHYVYPNNRPLRVLTLMLVAIMTNVLAFLSYPRLRRWSRRISSQRESYTYGGVKRLVLLVRMLASVMHWTGVWDALDGIFCKSDNVDDPCSYDQRGLWAITCVGLAGLIAMRQMNGAVWGPLFSVSLDFQCEIVLDTSLRFQTDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVLHVLDILATQWVPDVFAIFSWYGLYTWLPLKWQGTTMRAELVHVAASMGVAVGCYAAQFVLAGWVDASFPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSQSVSDVGAGSTNGTTSGVLQPVPPTTSPPASHSLTEAPLTDHPPSERWKNNALCAVPPFLSGKYLAELFLYLWAFVAANLLWVFFWNLLDDHFLPSHPLLSNWLCALGGLCLEFILNVASTEVAGGVYLDGAGEGSSGLFFPVCYFGELAAYRASIKSASTYALYRRSTAAAMMAASLSS 831
            +T  TD WA+EAAAQELE RLANLR+YSNWR NTRQYPSSPALE+QHALWALRQTASGGLS+VLP  + E E  E     + RG+SLS AIDEI G MSRRA+ AW RS T+A   N+   +SSS   G  +P    +RQP     GG   RV+L PGIGSSTG G S   E +G         G +G+ T  +     T +A +         E+++ L +D  SLL ASLL SK+PPLW+ WERL WT GDY MSL+VFVT+SITWWRGAWNLLD+YV+P +R LR L L L  +  NVL FL YP L RWSRRI+ +RESY +G VKRLVLL+RMLASV HWTGVWDA+DG FC  +   D CS+D   L  ITC+GLAGL+A+RQMNGAVWGPLFSVSLDFQ E+VLDTSLRF T +                                        L+ H+LDILATQW+PDVFAI +WYGLYTWLPL+W GT+ R EL++VAA+MGVAVGCYAAQFVLA WVDA +PR                                         G+   S    G+ N +T G L  +P     P                        C  PPFLSGKYLAEL LYLWAF+AAN+LWVF+W+ LDDH L   PLLSN LCA+GGL LEF+LNVASTEVAGGVYLDGA EGSSGLFFPVCYFGE+AAYRAS++SA  +A+YR+ST   +  ++  S
Sbjct:   58 STRVTDDWALEAAAQELEARLANLRRYSNWRLNTRQYPSSPALETQHALWALRQTASGGLSLVLPPAIAEEEESEHEGPSMVRGQSLSAAIDEINGFMSRRATSAWRRSRTLASGGNLPYPTSSSRLSGPLLP--LSQRQP-----GGAEGRVTLAPGIGSSTGSGRS--PEARG---------GRDGKGTKVVEGERVTASATQ---------EEEQRLPRDSPSLLRASLL-SKAPPLWSAWERLGWTIGDYFMSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSD-CSFDYSSLGTITCIGLAGLVALRQMNGAVWGPLFSVSLDFQDELVLDTSLRFHTSQ---------------------WRTGGQGEGPGGRLGGRGALLWHLLDILATQWLPDVFAILAWYGLYTWLPLRWPGTSRREELLYVAAAMGVAVGCYAAQFVLASWVDAYYPRASSSGSSSNGAGGEAVLEREGELGGSL--------------GNGRRSIASRGNHNRSTQGDLS-IPLQVPVP----------------------KCCEPPPFLSGKYLAELLLYLWAFLAANMLWVFWWDFLDDHLLSDRPLLSNLLCAVGGLALEFMLNVASTEVAGGVYLDGAAEGSSGLFFPVCYFGEVAAYRASLRSAQAFAVYRKSTMGGLAGSASCS 727
[Close]
BLAST of NO23G01920 vs. NCBI_GenBank
Match: XP_005854043.1 (hypothetical protein NGA_0435700, partial [Nannochloropsis gaditana CCMP526] >EKU22314.1 hypothetical protein NGA_0435700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.4 bits (433), Expect = 1.300e-38
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 0 
Query:  329 MSLLVFVTLSITWWRGAWNLLDHYVYPNNRPLRVLTLMLVAIMTNVLAFLSYPRLRRWSRRISSQRESYTYGGVKRLVLLVRMLASVMHWTGVWDALDGIFCKSDNVDDPCSYDQRGLWAITC 452
            MSL+VFVT+SITWWRGAWNLLD+YV+P +R LR L L L  +  NVL FL YP L RWSRRI+ +RESY +G VKRLVLL+RMLASV HWTGVWDA+DG FC  +   D CS+D   L  ITC
Sbjct:    1 MSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSD-CSFDYSSLGTITC 122
The following BLAST results are available for this feature:
BLAST of NO23G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27848.11.400e-20054.03hypothetical protein Naga_100318g2 [Nannochloropsi... [more]
XP_005854043.11.300e-3865.85hypothetical protein NGA_0435700, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007517NSK007517Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01920.1NO23G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100318g2gene2715Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01920.1NO23G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01920 ID=NO23G01920|Name=NO23G01920|organism=Nannochloropsis oceanica|type=gene|length=3291bp
AGGAGGGAGTACAGTACACGGGCCAAGAGGCAGCCACGGGTGCTGGTCCG
AGTCTCCTTCTTCTCTTCTTGCTCTTCAAGCGTTGTCGCTTCGTCTGCGT
GCCGGGCTCCTGTCTCAGCAGAGCAGTAGCACTGGATAACGAAGATCAAG
CCGTAGCACACAGTCATGGGCGACGATGACATTGAAAAGCAATGCAACTC
CTCTTCTTCCTGGCCAGTGTCTCCAACTACACATACCGTGCCACCCCTCC
AATCTCCTCTGCCTCCCTCCTCCCCGACTCCCTACTACTACGATGAGGAC
GACGAAGGCCTCGACGACGACGACGGCGGCGGCAGCGAGAGCGACCAATC
AGAATGTTCATATCAGGAGGAACAAGCGATCAAAATCACCACGGCCACCA
CAGACCGGTGGGCTATGGAGGCCGCGGCACAAGAGCTCGAGACACGACTG
GCTAACCTCCGGCAGTACAGCAACTGGCGGTTCAACACGCGGCAGTACCC
TTCCTCTCCCGCCCTTGAGTCCCAGCACGCCCTCTGGGCCCTGCGTCAGA
CAGCCTCGGGAGGGCTTAGTGTGGTACTGCCCACCACAATGGAAGGAGAA
GTGGACGAGGACGGGAGCTTTCACCTTCATCGGGGAAAATCTCTGTCCAC
GGCCATCGACGAAATCCAGGGGCTCATGTCAAGACGGGCTTCGCGGGCTT
GGACGCGCTCTGCCACGATTGCAGGTCGTAGTAATGTGGTACCCTCGTCT
TCATCCTCTTTCTCTTTCGGCCGATCGATCCCTTCTTTTGCGCGGCGTCG
TCAGCCCCACGGGGAAGGAGGAGGAGGAAGAAATGAAAGGGTGTCATTGG
GGCCGGGCATCGGTAGCAGCACAGGCCGAGGCGTGAGCTTCCACCACGAG
ACTCAAGGGGTAGGCACAGTCGGGGGCAAGGAGGAGGGGGAAGAAGGGAG
AAATACCTCACGGATGAGCAGCTCGGGCGAGACAGAGGCGGCTGTGGAGG
GCTTGGACTCCCGCGAGGCGCAGCCGGAGCAACAGGAGCATTTGGGACAG
GATCGCCAGAGCCTATTGCATGCATCCTTACTGAGCAGTAAGTCCCCGCC
GTTATGGACGACGTGGGAGCGGTTGGCCTGGACCGGGGGCGACTACCTGA
TGTCCCTCCTGGTGTTCGTCACCCTCTCCATCACCTGGTGGCGGGGCGCC
TGGAACCTTCTGGACCACTACGTCTATCCCAACAACCGGCCGCTCCGCGT
GCTCACCCTCATGCTGGTTGCCATTATGACCAACGTCCTGGCCTTTCTTT
CCTACCCTCGCCTCCGACGGTGGTCCCGGCGGATTTCCTCCCAGAGAGAG
AGTTACACTTATGGAGGGGTGAAGCGGCTGGTGCTGCTCGTGCGGATGCT
GGCCTCGGTTATGCACTGGACGGGGGTCTGGGACGCCTTGGATGGTATCT
TCTGCAAATCGGACAATGTGGACGACCCTTGCAGgtacggagggaggatg
cgggagggagggtagataggtgctcatgcatcagaggtacatgattgagt
acatcggtttggtcatcctcccatccttccttccccccctcccgccctcc
ctctcttgtagCTACGATCAAAGAGGCCTTTGGGCCATCACCTGCGTAGG
GCTGGCAGGCCTGATTGCGATGCGGCAGATGAACGGCGCAGTCTGGGGCC
CGCTCTTCTCTGTCTCGCTGGACTTCCAATGCGAGATCGTCCTCGACACC
TCCCTCCGTTTTCAAACCGACCGCACCGACCACACGGACTACAAGGGTAT
GGGCAAAGGCCGAAGCCATCGCTCCTCGCAACTCACTCACAAAAGCCGTG
GCAGCAGGAGCAGCGGGAGTGGCAGGGAGGGGAGGACGAGGGCGTTGGTG
TTGCACGTCCTCGACATCCTGGCCACCCAGTGGGTGCCCGACGTGTTTGC
CATCTTCTCCTGGTACGGGCTCTACACATGGCTGCCCCTGAAATGGCAGG
GCACGACGATGCGGGCGGAACTGGTGCACGTGGCGGCCTCGATGGGCGTG
GCTGTGGGGTGCTACGCCGCTCAGTTTGTACTGGCGGGGTGGGTGGACGC
GTCTTTCCCCCGGGGAGGAAACAGTAACAACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGGCAAAGGGGAGGAACGTGCTGGAGGAGGGT
GGTAGTATGAGTAGCGGCGGTGGGAGCGGGAGTCCGGGGAGTCAGAGCGT
CAGTGATGTGGGGGCGGGCAGCACCAATGGCACAACCAGCGGTGTTCTGC
AGCCCGTTCCTCCTACTACCTCTCCTCCTGCTTCTCATAGTCTCACTGAA
GCCCCTCTCACCGACCACCCACCCTCGGAGAGGTGGAAAAACAATGCCCT
GTGCGCCGTCCCTCCCTTCCTCTCCGGTAAGTACCTCGCCGAGCTCTTCC
TCTACCTCTGGGCCTTCGTCGCCGCCAATCTGTTGTGGGTGTTCTTCTGG
AACCTTCTGGACGACCACTTCCTCCCCTCCCACCCGTTGCTCTCCAACTG
GCTCTGTGCCCTTGGCGGGCTCTGCTTGGAATTCATCCTCAACGTGGCCT
CAACCGAGGTAGCAGGAGGGGTGTATTTGGACGGAGCTGGGGAAGGCAGC
TCGGGCCTGTTTTTTCCGGTGTGCTATTTCGGAGAGCTTGCGGCCTATCG
GGCCAGCATCAAGTCTGCCTCTACTTATGCCCTGTATAGGCGATCCACGG
CTGCGGCGATGATGGCTGCCAGCTTGTCCTCACGAGATGGACGGGGGAAG
GGGGAGGGAGGAGGGAGTCCCATGAGGGAGATTGCGTTGTCGGGCAAGGT
GCGATCCTTGTCGTTGTCAGCAGGAGAAAGGGAGAGAGGAAGGGAGAGGG
AAAGGGTTGGAGGAAGGAAGGTGCAGGTGGTTGGGGACATGTCGCCGGTG
TCGTTGGAGTTTGGTAGGGCGGAGTCGCAGGTGGGTTTGCTGGCAGACGA
GGCGGAGAGGAGCATTTGGGGGGGGAGGGGAAAGGAGGGGAGGAATGGAG
GGGGGAAGGATCGTGGGAAGGGGAGGCGGAAGAGTGAGTCGTCTTTGGTT
GCGGGAAAGGAGTTGGGCCGGGGTGACTTTGCTTGAGAGTGCGAGAGAGG
ATGAGGAATAGGCGTGATGTAATGGAGGTGAGAGGGAGAAAGGAAAGGAG
AGACAGACATATAAGACTTGCGAATTGAGAGTGGGTGTAAATATACGATG
TAATTAACAGACGAAATGACGACTGTGTGACTGTGGATGCC
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protein sequence of NO23G01920.1

>NO23G01920.1-protein ID=NO23G01920.1-protein|Name=NO23G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=948bp
MGDDDIEKQCNSSSSWPVSPTTHTVPPLQSPLPPSSPTPYYYDEDDEGLD
DDDGGGSESDQSECSYQEEQAIKITTATTDRWAMEAAAQELETRLANLRQ
YSNWRFNTRQYPSSPALESQHALWALRQTASGGLSVVLPTTMEGEVDEDG
SFHLHRGKSLSTAIDEIQGLMSRRASRAWTRSATIAGRSNVVPSSSSSFS
FGRSIPSFARRRQPHGEGGGGRNERVSLGPGIGSSTGRGVSFHHETQGVG
TVGGKEEGEEGRNTSRMSSSGETEAAVEGLDSREAQPEQQEHLGQDRQSL
LHASLLSSKSPPLWTTWERLAWTGGDYLMSLLVFVTLSITWWRGAWNLLD
HYVYPNNRPLRVLTLMLVAIMTNVLAFLSYPRLRRWSRRISSQRESYTYG
GVKRLVLLVRMLASVMHWTGVWDALDGIFCKSDNVDDPCSYDQRGLWAIT
CVGLAGLIAMRQMNGAVWGPLFSVSLDFQCEIVLDTSLRFQTDRTDHTDY
KGMGKGRSHRSSQLTHKSRGSRSSGSGREGRTRALVLHVLDILATQWVPD
VFAIFSWYGLYTWLPLKWQGTTMRAELVHVAASMGVAVGCYAAQFVLAGW
VDASFPRGGNSNNSSSSSSSSSSSSRAKGRNVLEEGGSMSSGGGSGSPGS
QSVSDVGAGSTNGTTSGVLQPVPPTTSPPASHSLTEAPLTDHPPSERWKN
NALCAVPPFLSGKYLAELFLYLWAFVAANLLWVFFWNLLDDHFLPSHPLL
SNWLCALGGLCLEFILNVASTEVAGGVYLDGAGEGSSGLFFPVCYFGELA
AYRASIKSASTYALYRRSTAAAMMAASLSSRDGRGKGEGGGSPMREIALS
GKVRSLSLSAGERERGRERERVGGRKVQVVGDMSPVSLEFGRAESQVGLL
ADEAERSIWGGRGKEGRNGGGKDRGKGRRKSESSLVAGKELGRGDFA*
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Synonyms
Publications