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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:577138..581529 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01570.1 vs.
Match: EWM27839.1 (flap endonuclease-1 [Nannochloropsis gaditana]) HSP 1 Score: 630.6 bits (1625), Expect = 4.400e-177 Identity = 362/516 (70.16%), Postives = 403/516 (78.10%), Query Frame = 0
Query: 1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSSLPPSLPLSSSPSTEEMPAAGAATAASGEEGGRE--GEEEAEAVNARETAPDEKEKTVVGEVMEEEAEKAVVENEEEVLVEGAEEGSHGAAEDTAGEDAGEEGKEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSTSSSSSALKRKEAPAVGKGKGKGKAGGKKR 515
MGIKGLTKLIADEAP+AIKEHKVEHYNGR +AVDASMAIYQFLIAIRHG+ G AA+QLTNEAGEVTSHIQGLFNRTIRML+SGIKPVFVFDGKPPTLKGGELDKRREKREKAE++LKKAQEEANVEEQDRQ+KRLVRAGKKESADCK+LLELMGVP+L+APCEAEAQCA LAKI KV+AVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKK+LEGL LT +QFIDLCILMGCDYTS+IRGIGPKSAL LIKK+GDIE +L+++ K K+Q+PPEW LP +P + + + EEG + G+E NA +TA E KA +E E+E EG + AA A E A +E + E E V + PAYVMAR LF PEIHDPAE +FKW EPNEAGLE FLID+LGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGS+S+SS+ LKRKEAPA KGKGK K GGKK+
Sbjct: 1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEW-----------------------LPRIKVRKPSSLPPSAPPSVSPVEEGDKAMPGDE-----NACKTA--------------EVDSKAGMEGEKE---EGIK-----AAAIVAREVAPDEPAKSVEGE-VMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSSSTSSTTLKRKEAPAAAKGKGKAKFGGKKK 465
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01570.1 ID=NO23G01570.1|Name=NO23G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp CACAGCACACGCGCAGTCACATACACGCCACTTAAAACTGAGTCAGAGAT GGGAATTAAAGGCTTGACAAAGCTCATAGCAGACGAGGCTCCCGATGCTA TTAAGGAGCACAAGGTCGAGCACTACAACGGGCGCATCATTGCTGTCGAT GCCTCTATGGCCATCTATCAATTTCTGATCGCCATCCGCCATGGCAACAG CGGCGGGGCCGCCGCCCAGCTGACCAACGAGGCGGGAGAGGTCACATCCC ACATCCAAGGGCTCTTCAACCGCACCATCCGCATGCTCTCCTCGGGCATC AAGCCAGTATTCGTCTTTGACGGCAAGCCTCCTACCCTGAAGGGAGGAGA ATTGGACAAGCGCCGCGAGAAGCGCGAAAAAGCCGAAGCCGACCTCAAGA AGGCACAGGAGGAGGCTAACGTCGAGGAGCAAGACCGGCAGAACAAGCGG CTGGTGCGCGCTGGGAAGAAGGAATCCGCCGACTGCAAACGTCTTCTGGA GCTGATGGGCGTACCTTTTCTCGACGCTCCCTGCGAGGCCGAGGCCCAGT GCGCGGGGCTCGCCAAGATCAGCAAGGTTTTCGCCGTTGCCACCGAAGAC ACCGACACCCTCACATTCGCCACGCCGAGGCTCCTCAGAAACATGACCAG CGCCGGCGATAATCCCATCAAGGAAATCGACTATAAGAAGGTGTTGGAGG GCCTGCAGCTGACTCCTTCCCAATTCATCGACCTCTGCATTCTCATGGGC TGCGACTACACCAGTTCCATCCGCGGTATTGGGCCCAAATCCGCCCTCAA TCTCATTAAAAAACACGGCGATATTGAGACCATCCTCAAGCACCTGCCCA AGGACAAGTTCCAGATCCCTCCCGAATGGCTCCCTCGCGTCCGAGTGCGC AAGGAAAAAAGCGCTGTCTCGTCCCCCTCTTCCTCCCTCCCGCCCTCCCT CCCTCTCTCCTCCTCGCCCTCGACGGAGGAGATGCCTGCCGCTGGTGCTG CCACTGCTGCTTCGGGAGAGGAGGGAGGGAGGGAGGGAGAGGAGGAGGCC GAGGCAGTCAATGCCCGCGAGACGGCGCCGGATGAGAAGGAAAAGACTGT AGTGGGGGAGGTGATGGAGGAGGAGGCGGAGAAGGCCGTGGTCGAGAACG AGGAGGAGGTGTTGGTGGAAGGCGCGGAAGAGGGCAGCCACGGCGCGGCT GAGGACACGGCGGGGGAGGACGCGGGGGAGGAAGGGAAGGAAGGCGAGGA GTGGGAATGGGTCGACCAGACACCCGCCTACGTAATGGCCCGCACTCTCT TCTCCCACCCCGAGATTCACGACCCGGCAGAGCAGAGCTTCAAGTGGACT GAGCCGAACGAGGCCGGGCTAGAGGAGTTTCTCATCGACAATTTGGGCTT CAACCCCGACCGAGTCAAGTCAGGCATTGCCAAGCTCAAGGCATCGCGCG GTGCGATGCAGCAGAAACGACTGGATTCGTTCTTCAAGCCGTCGGGCTCG ACCTCCTCCTCCTCCTCCGCGCTCAAGCGCAAGGAAGCCCCGGCGGTGGG GAAGGGGAAGGGGAAGGGGAAGGCGGGAGGGAAGAAGAGGTAGAGAGAGA GAGATAGCATGAGTATCCGACGATTTGAAGAGGGAGGGGTAGGGGCGACA TGGTGACGGCCAGTGGGCAATCAGAGAGCAGGGGGTGGGGAAAAGTAGGG CGTTGCTTGATTACATTCATTTATCCATTGATGTATTATGGAGAAGGGAG GCAGCTAACGCCTCCCCTGGGTTACCAGGGGAGGGAGAGAGGGAGGGAGA GAAGAGAGTGTGGATGCGTTGTTTGATTACATTCATTTATCCACTTATGT ATTATGGAGAGGAGAGGCAGCTAACGCCGCCCCTGGGTTACGAGGGAGGG AGAGAGGGAGGGAGAGCTGAGAAGGTGGATGCAGCCATGGGCTGGATCTC TAGTGCGTGTGGGAGATACGTAAAAGAGCAGAAGAAAGATCGAAAGATCG AAAGATCGAAAGAAGTACAGAGCGACAGAACGACAGGAAGATAGGGAAAA AAGTAAGAGGGGGAAAGATTATATGAACGTGGTA back to topprotein sequence of NO23G01570.1 >NO23G01570.1-protein ID=NO23G01570.1-protein|Name=NO23G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGN SGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGG ELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLL ELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSAL NLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSSLPPS LPLSSSPSTEEMPAAGAATAASGEEGGREGEEEAEAVNARETAPDEKEKT VVGEVMEEEAEKAVVENEEEVLVEGAEEGSHGAAEDTAGEDAGEEGKEGE EWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLG FNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSTSSSSSALKRKEAPAV GKGKGKGKAGGKKR* back to topmRNA from alignment at chr23:577138..581529- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01570.1 ID=NO23G01570.1|Name=NO23G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=4392bp|location=Sequence derived from alignment at chr23:577138..581529- (Nannochloropsis oceanica) CACAGCACACGCGCAGTCACATACACGCCACTTAAAACTGAGTCAGAGAT
GGGAATTAAAGGCTTGACAAAGCTCATAGCAGACGAGGCTCCCGATGCTA
TTAAGGAGCACAAGGTAAGCAAATCAGCCTCTTACTTTCCACCTGCCTCA
TGCTCCCCTCACTTCTCCTCTTTCCACCCTTCTCATCTCTCTCTTCTTCC
CAGGTCGAGCACTACAACGGGCGCATCATTGCTGTCGATGCCTCTATGGC
CATCTATCAATTTCTGGTGCGGAAGGAGGGAAGGGAGACGGGAAGAGAGG
AAGGCGCGAACAAAAACAATGAAGGGAGAGGAAAGGGAACTGGGGTGTAA
TGAACTACGCTCGGTCCACCTTCCCTTCTTCACGAGCATATCTTCACCAT
CATTCATTCCTGCCTTTCTGCTCCATCTGTCATAATTCTGCTGACGCAAC
ATCCTTGCCTCCCTCCCTCGTCCAGATCGCCATCCGCCATGGCAACAGCG
GCGGGGCCGCCGCCCAGCTGACCAACGAGGCGGGAGAGGTACGTGTTAAG
GGGTGGAATGAGACGGGTATCGATCACAAATGACGGGAAAAGTGAGAAAT
GAGATAAGAGGCGGATGGAGTGACACACATACACGCACGCATTCCCATTT
GGTGAGATTTGGGCTGCTCAACTTCCCTCCTCCGAACCCTCCCTCCCTCC
CTCCCTCCCTCCATCCATCCCTCAGGTCACATCCCACATCCAAGGGCTCT
TCAACCGCACCATCCGCATGCTCTCCTCGGGCATCAAGCCAGTATTCGTC
TTTGACGGCAAGCCTCCTACCCTGAAGGTACCCCCCTTCCTCCCTCCCTC
CCTCCCTCCCTCAGCCCATGCATCCGTCACTCTCATCTCTCCCTCCCTCA
CTCACTCACTCACTCACTCACTCCCTCCCTTCCTACCTTTCACAGGGAGG
AGAATTGGACAAGCGCCGCGAGAAGCGCGAAAAAGCCGAAGCCGACCTCA
AGAAGGCACGTTACCCTCCCCCCCTCCCCCCACCTTCCCTCCATTCCTCC
TTCAGGCCCGACACAAGATAGGCTCACCCTATCTTCCTCTCTTTCTCCCT
CCCTCTCTGACCACAGGCACAGGAGGAGGCTAACGTCGAGGAGCAAGACC
GGCAGAACAAGCGGCTGGTGCGCGCTGGGAAGAAGGTACGTCTGAAATTC
AGGGAGGAAAGGAGGGAGGAAGGGAAGGAGGGAGGGAAGAAAGGGACCAT
GGTTTTGGCGCGTCACTAAAATGCAGACCGTCTTAACATGACATTTCTCC
CACTCCCTCCTTCCGTCTCACCCTCTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTTCCCAAGGAATCCGCCGACTGCAAACGTCTTCTGGAGC
TGATGGGCGTACCTTTTCTCGACGCTCCCTGCGAGGCCGAGGCCCAGTGC
GCGGGGCTCGCCAAGGCAAGCAAGCGCTCCCTCAAGCCCTCCCTCAAGCC
CTCCTTCAAGCCCTGCCTCCTTCCCTGTGAAATTCGTATGGCTGTCTTAC
TTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCTTTCCAGATCAGCAAGGTTTTCGCCGTTGCCACCGAAGACACC
GACACCCTCACATTCGCCACGTGCGTGCCCGTCCTCCCTCCCTCCCTCCC
TCCCTCCCTTCCTTCCTCCCTTCCTCCGCTCCTCAGAACTGGGTTCTCAC
CTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCAG
GCCGAGGCTCCTCAGAAACATGACCAGCGCCGGCGATAATCCCATCAAGG
AAATCGACTATAAGAAGGCGCGTGCCCTCCCTCCCTTCCTCCCTCTCTCC
CTCCTCCCTCTTTCTTTGTGACCGAACGAAAGCAACGCCGCGTTCGAAAG
AGACCTTTCCTTGTCCATTGCACTCCCAAATATCCAAACGCATGCACAGC
ACATCCATAACAACAGCAGAAGGAGGAGATGGATAAGTCAGCGGGACAAT
CCATCCACTCACTCAATCATCCTCCTGAAACAGGTGTTGGAGGGCCTGCA
GCTGACTCCTTCCCAATTCATCGACCTCTGCATTCTCATGGGCTGCGACT
ACACCAGTTCCATCCGCGGTATTGGGCCCAAATCCGCCCTCAATCTCATT
AAAAAACACGGCGATATTGAGACCATCCTCAAGCACCTGCCCAAGGTACG
CCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCGCAT
GACAATCTTGAACAACCAAGTCGCCCCTCTCTTCATGTTCTTGCTTCACC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAC
CCTTCAGGACAAGTTCCAGATCCCTCCCGAATGGCTCCCTCGCGTCCGAG
TGCGCAAGGAAAAAAGCGCTGTCTCGTCCCCCTCTTCCTCCCTCCCGCCC
TCCCTCCCTCTCTCCTCCTCGCCCTCGACGGAGGAGATGCCTGCCGCTGG
TGCTGCCACTGCTGCTTCGGGAGAGGAGGGAGGGAGGGAGGGAGAGGAGG
AGGCCGAGGCAGTCAATGCCCGCGAGACGGCGCCGGATGAGAAGGAAAAG
ACTGTAGTGGGGGAGGTGATGGAGGTAGGGAGGGAGGGAGGGAGGGCGGG
CGGGAGGGCGGGCGGATGAAGATTATCAAGAGAGGACGGAAGAGCGATTT
GCTCTATTGACATCACCACACCCACACGCACGTACTCTGACAGGAGGAGG
CGGAGAAGGCCGTGGTCGAGGTCAGGGGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTAAGAGGATACTGT
CGATTACACCATTCGCCCACCCTCCCTCTTTTCCTCCCTCCCCCCCTCCC
TCACTTTTTTCCCCTGCTGCAGAACGAGGAGGAGGTGTTGGTGGAAGGCG
CGGAAGAGGGCAGCCACGGCGCGGCTGAGGACACGGCGGGGGAGGACGCG
GGGGAGGAAGGGAAGGAAGGCGAGGAGTGGGAATGGGTCGACCAGGCAAG
GGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGATGGAGAAGTTTGAAAGAATTTGCTGTCTATTCCACACAACAACTT
CTGACAACTCACATTCTTCCTTTCCTCCCTCACTCCCTCTCTCCCTCCCT
CCCTCCCTAGACACCCGCCTACGTAATGGCCCGCACTCTCTTCTCCCACC
CCGAGATTCACGACCCGGCAGAGCAGAGCTTCAAGTGGACTGTAGGGAGG
GAGGCGAGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAATACAGTG
GATATTAAAACGCCAACATCGCACATGGGACAAAAGCTCTCTGCCACACA
CCCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCGGTTCTCAGGAGCCGA
ACGAGGCCGGGCTAGAGGAGTTTCTCATCGACAATTTGGGCTTCAACCCC
GACCGAGTCAAGTCAGGCATTGCCAAGCTCAAGGTCAAAGGGAGGGAGGG
AGGGAGGGAGGGAGGAAGGGAGGGAGGGCGGACGTCGGACTCTTGGCACC
ACCGTCGCTTTTTCTCACTCACCTCACCTTCCCTCCCTTTTTCCCATCCC
TACCCCTCCTTTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCTTCCAGGC
ATCGCGCGGTGCGATGCAGCAGAAACGACTGGATTCGTTCTTCAAGCCGT
CGGGCTCGACCTCCTCCTCCTCCTCCGCGCTCAAGCGCAAGGAAGCCCCG
GCGGTGGGGAAGGGGAAGGGGAAGGGGAAGGCGGGAGGGAAGAAGAGGTA
GAGAGAGAGAGATAGCATGAGTATCCGACGATTTGAAGAGGGAGGGGTAG
GGGCGACATGGTGACGGCCAGTGGGCAATCAGAGAGCAGGGGGTGGGGAA
AAGTAGGGCGTTGCTTGATTACATTCATTTATCCATTGATGTATTATGGA
GAAGGGAGGCAGCTAACGCCTCCCCTGGGTTACCAGGGGAGGGAGAGAGG
GAGGGAGAGAAGAGAGTGTGGATGCGTTGTTTGATTACATTCATTTATCC
ACTTATGTATTATGGAGAGGAGAGGCAGCTAACGCCGCCCCTGGGTTACG
AGGGAGGGAGAGAGGGAGGGAGAGCTGAGAAGGTGGATGCAGCCATGGGC
TGGATCTCTAGTGCGTGTGGGAGATACGTAAAAGAGCAGAAGAAAGATCG
AAAGATCGAAAGATCGAAAGAAGTACAGAGCGACAGAACGACAGGAAGAT
AGGGAAAAAAGTAAGAGGGGGAAAGATTATATGAACGTGGTA back to topCoding sequence (CDS) from alignment at chr23:577138..581529- >NO23G01570.1 ID=NO23G01570.1|Name=NO23G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1545bp|location=Sequence derived from alignment at chr23:577138..581529- (Nannochloropsis oceanica) ATGGGAATTAAAGGCTTGACAAAGCTCATAGCAGACGAGGCTCCCGATGC TATTAAGGAGCACAAGGTCGAGCACTACAACGGGCGCATCATTGCTGTCG ATGCCTCTATGGCCATCTATCAATTTCTGATCGCCATCCGCCATGGCAAC AGCGGCGGGGCCGCCGCCCAGCTGACCAACGAGGCGGGAGAGGTCACATC CCACATCCAAGGGCTCTTCAACCGCACCATCCGCATGCTCTCCTCGGGCA TCAAGCCAGTATTCGTCTTTGACGGCAAGCCTCCTACCCTGAAGGGAGGA GAATTGGACAAGCGCCGCGAGAAGCGCGAAAAAGCCGAAGCCGACCTCAA GAAGGCACAGGAGGAGGCTAACGTCGAGGAGCAAGACCGGCAGAACAAGC GGCTGGTGCGCGCTGGGAAGAAGGAATCCGCCGACTGCAAACGTCTTCTG GAGCTGATGGGCGTACCTTTTCTCGACGCTCCCTGCGAGGCCGAGGCCCA GTGCGCGGGGCTCGCCAAGATCAGCAAGGTTTTCGCCGTTGCCACCGAAG ACACCGACACCCTCACATTCGCCACGCCGAGGCTCCTCAGAAACATGACC AGCGCCGGCGATAATCCCATCAAGGAAATCGACTATAAGAAGGTGTTGGA GGGCCTGCAGCTGACTCCTTCCCAATTCATCGACCTCTGCATTCTCATGG GCTGCGACTACACCAGTTCCATCCGCGGTATTGGGCCCAAATCCGCCCTC AATCTCATTAAAAAACACGGCGATATTGAGACCATCCTCAAGCACCTGCC CAAGGACAAGTTCCAGATCCCTCCCGAATGGCTCCCTCGCGTCCGAGTGC GCAAGGAAAAAAGCGCTGTCTCGTCCCCCTCTTCCTCCCTCCCGCCCTCC CTCCCTCTCTCCTCCTCGCCCTCGACGGAGGAGATGCCTGCCGCTGGTGC TGCCACTGCTGCTTCGGGAGAGGAGGGAGGGAGGGAGGGAGAGGAGGAGG CCGAGGCAGTCAATGCCCGCGAGACGGCGCCGGATGAGAAGGAAAAGACT GTAGTGGGGGAGGTGATGGAGGAGGAGGCGGAGAAGGCCGTGGTCGAGAA CGAGGAGGAGGTGTTGGTGGAAGGCGCGGAAGAGGGCAGCCACGGCGCGG CTGAGGACACGGCGGGGGAGGACGCGGGGGAGGAAGGGAAGGAAGGCGAG GAGTGGGAATGGGTCGACCAGACACCCGCCTACGTAATGGCCCGCACTCT CTTCTCCCACCCCGAGATTCACGACCCGGCAGAGCAGAGCTTCAAGTGGA CTGAGCCGAACGAGGCCGGGCTAGAGGAGTTTCTCATCGACAATTTGGGC TTCAACCCCGACCGAGTCAAGTCAGGCATTGCCAAGCTCAAGGCATCGCG CGGTGCGATGCAGCAGAAACGACTGGATTCGTTCTTCAAGCCGTCGGGCT CGACCTCCTCCTCCTCCTCCGCGCTCAAGCGCAAGGAAGCCCCGGCGGTG GGGAAGGGGAAGGGGAAGGGGAAGGCGGGAGGGAAGAAGAGGTAG back to top
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