NO23G01570, NO23G01570 (gene) Nannochloropsis oceanica

Overview
NameNO23G01570
Unique NameNO23G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4392
Alignment locationchr23:577138..581529 -

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Properties
Property NameValue
DescriptionFlap endonuclease 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:577138..581529 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003677DNA binding
GO:0004518nuclease activity
GO:0005488binding
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
IPR0362795-3_exonuclease_C_sf
IPR0024215-3_exonuclease_N
IPR008918HhH2
IPR006086XPG-I_dom
IPR006085XPG_DNA_repair_N
IPR006084XPG/Rad2
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO23G01570 vs. NCBI_GenBank
Match: EWM27839.1 (flap endonuclease-1 [Nannochloropsis gaditana])

HSP 1 Score: 615.5 bits (1586), Expect = 1.500e-172
Identity = 330/484 (68.18%), Postives = 359/484 (74.17%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKS-AVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSG 484
            MGIKGLTKLIADEAP+AIKEHKVEHYNGR +AVDASMAIYQFLIAIRHG+ G AA+QLTNEAGEVTSHIQGLFNRTIRML+SGIKPVFVFDGKPPTLKGGELDKRREKREKAE++LKKAQEEANVEEQDRQ+KRLVRAGKKESADCK+LLELMGVP+L+APCEAEAQCA LAKI KV+AVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKK+LEGL LT +QFIDLCILMGCDYTS+IRGIGPKSAL LIKK+GDIE +L+++ K K+Q+PPEWLPR++VRK  S                                                 + ARE APDE  K+V GE                                                  V + PAYVMAR LF  PEIHDPAE +FKW EPNEAGLE FLID+LGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSG
Sbjct:    1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKIGKVYAVATEDTDTLTFATPRLLRNMTSAGDNPIKEIDYKKMLEGLGLTHAQFIDLCILMGCDYTSNIRGIGPKSALTLIKKYGDIEHVLENISKGKYQVPPEWLPRIKVRKPSSLPPXXXXXVSPVEEGDKAMPGDENACKTAEVDSKAGMEGEKEEGIKAAAIVAREVAPDEPAKSVEGE--------------------------------------------------VMEMPAYVMARALFVQPEIHDPAELNFKWVEPNEAGLEAFLIDSLGFNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSG 434          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: CBJ29727.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 367.5 bits (942), Expect = 6.900e-98
Identity = 251/480 (52.29%), Postives = 306/480 (63.75%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMTSAGDN-PIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQQKRLDSFF 480
            MGI GLTKL++DEAP+ +KE  ++   GR +AVDASMA+YQFLIA+R G   G +  LTNEAGEVTSHIQG+FNRTIRMLS G+KP ++FDGKPP LKGGEL KR  KR KAEA+LK A E  +  + D+ +KRLVR  +  + DCK+LL LMGVP + AP EAEAQCA LA+   V+  ATED D LTF TP+LLR MT +G N PI E+DY+K+L+GL+L+  +F+DLC+L GCDYT SI+GIGPK AL L+++HG IE I+KHL   K+ +P +WL                                   XXXXXXXXXXXXXXXXXXXXXXX            + V  E       XXXXXXXXXXX                  XXXXXXX     E  D  P Y  AR LF  PE+    E   KWT+P+E GL +FL++  GFN +RV SGI KLK +R  + QKR+DSFF
Sbjct:    1 MGIHGLTKLLSDEAPNCMKEVDLDSLTGRKVAVDASMAMYQFLIAVRSGGE-GQSQMLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATEADDKNDVDKFSKRLVRVTRDHNEDCKKLLSLMGVPVVTAPSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGCDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWL---------------------------------EPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPEAVSEEDVQQKEGXXXXXXXXXXXPDHGVSVAKEAADVSAKRXXXXXXXXXXXQEMDDTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGFNAERVASGIVKLKGARKNVSQKRMDSFF 446          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: EJK66115.1 (hypothetical protein THAOC_12982 [Thalassiosira oceanica])

HSP 1 Score: 367.5 bits (942), Expect = 6.900e-98
Identity = 221/483 (45.76%), Postives = 273/483 (56.52%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFF 480
            MGIKGL KL++DEAPD+I+E  +   +GR IAVDASMAIYQ LIAIR GN   AA  LTN  GE TSHIQG+FNRTI+ ++ GI+PV+VFDGKPP+ K GEL KRREKR+KAE  LK A+E  +VEEQD+  KRLVRAG KE+ D KRLL LMGVP ++APCEAEAQ A LAK  KV+A ATED D LTF TP  +R MT   A    I+E++Y K L GL L   QF+DLCIL+GCDY  +I+GIGPK+AL LIK+H +IETILK L ++K+ +P  + P V  RK +      S                                           N   TA   K KT                                               EGEE E +   P YV AR LF+  E+   +E   KW +     L+ FL+D +GFNP+RV+S I KL+ +    +  Q R+DSFF
Sbjct:    1 MGIKGLAKLLSDEAPDSIREVPLSSLHGRKIAVDASMAIYQMLIAIRSGNPNMAATVLTNADGETTSHIQGIFNRTIKFITEGIRPVYVFDGKPPSFKSGELLKRREKRQKAEEALKAAEESGDVEEQDKHTKRLVRAGHKENEDIKRLLTLMGVPIINAPCEAEAQAAALAKAGKVYATATEDMDALTFQTPIQVRKMTFAKASQAEIQEVNYSKALIGLGLNHDQFVDLCILLGCDYCDTIKGIGPKTALKLIKEHNNIETILKTLNREKYTVPESYEPNVAARKRQLEEDGDSD------------------------------------------NEDATAKTGKPKT-----------------------------------------------EGEEDEEI--LPVYVEARKLFNSHEVLPDSEIELKWKDCQPEQLKAFLVDEMGFNPERVQSNIEKLQKAHKTSKKPQMRMDSFF 392          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: GAX22215.1 (flap endonuclease-1 [Fistulifera solaris])

HSP 1 Score: 360.9 bits (925), Expect = 6.500e-96
Identity = 214/484 (44.21%), Postives = 277/484 (57.23%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSG-GAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFF 480
            MGIKGL KLI+DEAPDAI+E +++  +GR IA+DASMAIYQFLIA+R  N G G +  LTN  GE TSHIQG+FNRTIR ++ GIKPVFVFDGKPP +K GEL KRREKREKA+  L+ A EE NVEEQD+ +KRLVRAG+KE+ DC++LL LMGVP + APCEAEAQ A LAK   V+A  TED D LTF TP L+R MT  SA  + ++ ++Y K LEG+ LT +QF+DLCI++GCDY  +I+G+GPK+AL LI++HG IE ILKHL   K+ +P  WLP  +  +E S+                                                        ++E +V  +                                                  +   PAYV+AR +F+  E+   A+   KW       L +FL+D +GFNPDRV S I KL+A+  A +  Q R+D+FF
Sbjct:    1 MGIKGLAKLISDEAPDAIREVELKSLHGRKIAIDASMAIYQFLIAVRSNNGGQGQSFMLTNAEGETTSHIQGMFNRTIRYMTEGIKPVFVFDGKPPEVKSGELLKRREKREKAQLALQVATEEGNVEEQDKHSKRLVRAGQKENDDCQKLLRLMGVPVVLAPCEAEAQAAALAKAGLVYAAGTEDMDALTFQTPVLVRKMTFASASKSMVQTMNYAKALEGMNLTQAQFVDLCIMLGCDYCDTIKGVGPKTALKLIREHGCIENILKHLDGKKYVVPESWLPPPKEAEESSS--------------------------------------------------------DQENSVSDD--------------------------------------------------LQPIPAYVLARRMFNEHEVLMHAD--LKWKPCEREALTKFLVDEMGFNPDRVASSIDKLEAAYKANKAPQTRMDAFF 376          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: GAX19694.1 (flap endonuclease-1 [Fistulifera solaris])

HSP 1 Score: 355.1 bits (910), Expect = 3.600e-94
Identity = 214/484 (44.21%), Postives = 274/484 (56.61%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSG-GAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQ--QKRLDSFF 480
            MGIKGL KLI+DEAPDAI+E +++  +GR IA+DASMAIYQFLIA+R  N G G +  LTN  GE TSHIQG+FNRTIR ++ GIKPVFVFDGKPP +K GEL KRREKREKA+  L+ A EE NVEEQD+ +KRLVRAG+KE+ DC++LL+LMGVP + APCEAEAQ A LAK   V+A  TED D LTF TP L+R MT  SA  + ++ ++Y K LEG+ LT +QF+DLCI++GCDY  +I+G+GPK+AL LI++HG IE ILKHL   K+ +P  WLP             P+                                                A  ++E +V  +                                                      PAYV+AR +F+  E+   AE   KW       L +FL+  +GFNPDRV S I KL+A+  A +  Q R+D+FF
Sbjct:    1 MGIKGLAKLISDEAPDAIREVELKSLHGRKIAIDASMAIYQFLIAVRSNNGGQGQSFMLTNAEGETTSHIQGMFNRTIRYMTEGIKPVFVFDGKPPEVKSGELLKRREKREKAQLALQVATEEGNVEEQDKHSKRLVRAGQKENDDCQKLLKLMGVPVVLAPCEAEAQAAALAKAGLVYAAGTEDMDALTFQTPVLVRKMTFASASKSMVQTMNYAKALEGMNLTQAQFVDLCIMLGCDYCDTIKGVGPKTALKLIREHGCIENILKHLDGKKYVVPESWLP------------PPAE-----------------------------------------------AESDQENSVSDDH--------------------------------------------------QPIPAYVLARRMFNEHEVLTHAE--LKWKPCEREELTKFLVGEMGFNPDRVASSIDKLEAAYKANKAPQTRMDAFF 373          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: XP_002183226.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >B7G7Y7.1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 >EEC45444.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 353.2 bits (905), Expect = 1.400e-93
Identity = 208/483 (43.06%), Postives = 276/483 (57.14%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKAS--RGAMQQKRLDSFF 480
            MGIKGL KL++DEAPD I+E +++  +GR IA+DASMAIYQFLIA+R G     A  LTN  GE TSHIQG+FNRTIR ++ GI+PVFVFDGKPP +K  EL KRREKREKA+A L  A EE NVEEQD+Q+KRLVRAG KE+ DC++LL LMGVP + APCEAEAQ A L K   V+A  TED D LTFATP L+R +T  +A  + ++ ++Y KV+EGL ++  QF+DLCI++GCDY  +IRG+GPK+AL LI++HG+IE +++ + + KF +P  W+P     K+  A S                                           XX    E+   E+   +V                                                  +  +  PAYV AR LF+  E+ +  E   KW       L++FL+D++GFN DRVK+ I KL+A+    +  Q R+DSFF
Sbjct:    1 MGIKGLAKLLSDEAPDCIREVELKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTNAEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQAALAVASEEGNVEEQDKQSKRLVRAGTKENEDCRKLLTLMGVPVVTAPCEAEAQAAALCKAGLVYATGTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIEGLAISHDQFVDLCIMLGCDYCDTIRGVGPKTALKLIREHGNIEKVIETIDRKKFVVPESWVPN---EKKLDAQSD-----------------------------------------DXXXEGVESPSKEENNGIV--------------------------------------------------DTEELIPAYVQARKLFNEHEVLNDIE--LKWKPCQAEDLQKFLVDDMGFNVDRVKNNIEKLQAAYKANSKPQTRMDSFF 387          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: XP_002292004.1 (exonuclease [Thalassiosira pseudonana CCMP1335] >B8C6S5.1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap structure-specific endonuclease 1 >EED90855.1 exonuclease [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 347.8 bits (891), Expect = 5.700e-92
Identity = 207/486 (42.59%), Postives = 262/486 (53.91%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGG--AAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT--SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKAS--RGAMQQKRLDSFFK 481
            MGIKGL KL++DEAP ++KE  + H +GR +A+DASMAIYQFLIA+R G  GG  AA  LTN  GE TSHIQG+FNRTIR +S GI+PV+VFDGKPP  K GEL KRREKR KAE  LK A+E  N+EEQD+Q+KRLVRAG KE+ DC +LL LMGVP + APCEAEAQ A LA+  KV+A ATED D LTF +P ++R MT  +A  + +++I Y K +EGL++T  QF+DLCIL+GCDY  +I+GIGPK+AL LI++H +IETILKHL ++K+ +P                                                                                                                                        YV AR LF+H E+    E   KWTE     L+ FL+D +GFNPDRV++ I KL+ +    A  Q R+DSFFK
Sbjct:    1 MGIKGLAKLLSDEAPLSLKEVPLSHLHGRKLAIDASMAIYQFLIAVRSGGPGGQNAAMMLTNADGETTSHIQGIFNRTIRFISEGIRPVYVFDGKPPQFKSGELLKRREKRLKAEQALKAAEESGNIEEQDKQSKRLVRAGTKENEDCIKLLTLMGVPVIRAPCEAEAQAAALARSGKVYAAATEDMDALTFRSPVMVRKMTFANASKSDVQQIFYDKAIEGLEITHDQFVDLCILLGCDYCDTIKGIGPKTALKLIREHKNIETILKHLNREKYVVP--------------------------------------------------------------------------------------------------------------------------------------DIYVEARRLFNHHEVLPDNEIELKWTECQPEPLKSFLVDEMGFNPDRVQASIEKLQKAFKASAKPQSRMDSFFK 352          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: OQR97778.1 (flap endonuclease 1 [Achlya hypogyna])

HSP 1 Score: 344.4 bits (882), Expect = 6.300e-91
Identity = 204/481 (42.41%), Postives = 252/481 (52.39%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMTSAGDN--PIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQQKRLDSFF 480
            MGIKGL KL+ DEAP  +KE ++   +GR +A+DASMA+YQFLIA+R    GG AAQLTNEAGEVTSHIQG+FNRTIR++ +G+KPV+VFDGKPP +K GEL KR E+R++A+A LK A EE N E+ D+  KRLVRA  + S DCK LL LMG+PF+ APCEAEA CA LAK  KVFA  TED D +TF TP L R +T A     PI EI  +KVL+ L L+  QF+DLCIL GCDY  +I GIGPK ALN IK+H  IE  L HL K                       +PS                                               T P                                                          +W+ +   Y  AR++F   E+ D +   FKW EPN   L  FL+D  GFN DRV +GI KLK ++ +  Q+RL+SFF
Sbjct:    1 MGIKGLMKLLTDEAPSCVKEMQMSQLSGRSVAIDASMALYQFLIAVRSAGEGGGAAQLTNEAGEVTSHIQGMFNRTIRLMENGVKPVYVFDGKPPVMKSGELAKRTERRQEAQASLKAATEEGNQEDIDKFTKRLVRATPQHSEDCKELLGLMGIPFITAPCEAEATCAALAKAGKVFAAGTEDMDVVTFGTPVLFRRLTIAASRKLPILEIRIEKVLQELNLSYEQFVDLCILCGCDYCDTIFGIGPKKALNAIKEHKSIENFLAHLEK-----------------------NPSKGV--------------------------------------------TVPQ---------------------------------------------------------DWLGEDAIYKQARSMFIEAEVADVSTIDFKWKEPNVDELRAFLVDKHGFNADRVLNGIEKLKKAKTSHSQQRLESFF 357          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: XP_012198398.1 (hypothetical protein SPRG_04596 [Saprolegnia parasitica CBS 223.65] >KDO30694.1 hypothetical protein SPRG_04596 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 340.9 bits (873), Expect = 6.900e-90
Identity = 203/481 (42.20%), Postives = 252/481 (52.39%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMTSAGDN--PIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQQKRLDSFF 480
            MGIKGL KL+ DEAP  +KE ++   +GR +A+DASMA+YQFLIA+R    GG AAQLTNEAGEVTSHIQG+FNRTIR++ +G+KPV+VFDGKPP +K GEL KR E+R++A+A+LK A EE N ++ D+  KRLVRA  + S DCK LL LMGVPF+ APCEAEA CA LAK  KVFA  TED D +TF TP L R +T A     PI EI  +KVLE L LT  QF+DLCIL GCDY  +I GIGPK ALN IK+H  IE  + HL K                        PS                                               T P                                                          +W+ +   Y  AR +F   E+ D +E  FKW +PN   L  FL++  GFN +RV +GI KLK ++ +  Q+RL+SFF
Sbjct:    1 MGIKGLMKLLTDEAPSCVKEMQMSQLSGRSVAIDASMALYQFLIAVRSTGDGGGAAQLTNEAGEVTSHIQGMFNRTIRLMENGVKPVYVFDGKPPVMKSGELAKRTERRQEAQANLKTATEEGNQDDIDKFTKRLVRATPQHSEDCKELLGLMGVPFITAPCEAEATCAALAKAKKVFAAGTEDMDVVTFGTPVLFRRLTIAASRKLPILEIRLEKVLEELNLTYEQFVDLCILCGCDYCDTIFGIGPKKALNAIKEHKTIENFIAHLEK-----------------------HPSKGV--------------------------------------------TVPQ---------------------------------------------------------DWLGEDAIYKQARGMFIEAEVADVSEIDFKWKDPNVDELRAFLVEKHGFNAERVLNGIEKLKKAKTSHSQQRLESFF 357          
BLAST of NO23G01570 vs. NCBI_GenBank
Match: OQR90044.1 (flap endonuclease 1 [Thraustotheca clavata])

HSP 1 Score: 338.6 bits (867), Expect = 3.400e-89
Identity = 202/482 (41.91%), Postives = 254/482 (52.70%), Query Frame = 0
Query:    1 MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIR-HGNSGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGGELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLLELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMTSAGDN--PIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSALNLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNARETAPDEKEKTVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLGFNPDRVKSGIAKLKASRGAMQQKRLDSFF 480
            MGIKGL KL+ DEAP  +KE ++   +GR +A+DASMA+YQFLIA+R +G+ GG A  LTNEAGEVTSHIQG+FNRTIR++ +G+KPV+VFDGKPP +K GEL KR E+R++A+A LK A EE N E+ D+  KRLVRA  + + DCK LL LMG+PFL APCEAEA CA LAK  KVFA  TED D +TF TP L R +T A     PI EI  +KVL+ L LT  QF+DLCIL GCDY  +I GIGPK ALN I++H  IE  L HL K                        PS                                               T P                                                          +W+ +   Y  AR++F + E+ D AE  FKW EP+   L  FL++  GFN DRV +GI KLK ++ +  Q+RL++FF
Sbjct:    1 MGIKGLMKLLTDEAPTCVKELQMAQLSGRSVAIDASMALYQFLIAVRSNGDGGGTAQMLTNEAGEVTSHIQGMFNRTIRLMENGVKPVYVFDGKPPVMKSGELAKRTERRQEAQASLKTATEEGNTEDIDKFTKRLVRATPQHNEDCKELLGLMGIPFLTAPCEAEATCAALAKAGKVFAAGTEDMDVITFGTPVLFRRLTIAASRKLPILEIRLEKVLQELNLTYEQFVDLCILCGCDYCETIFGIGPKKALNAIREHKSIENFLAHLEK-----------------------HPSKGV--------------------------------------------TVPH---------------------------------------------------------DWLGEDAIYKQARSMFINAEVSDTAEIDFKWKEPSVDELRAFLVEKHGFNADRVMNGIEKLKKAKTSHSQQRLENFF 358          
The following BLAST results are available for this feature:
BLAST of NO23G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27839.11.500e-17268.18flap endonuclease-1 [Nannochloropsis gaditana][more]
CBJ29727.16.900e-9852.29conserved unknown protein [Ectocarpus siliculosus][more]
EJK66115.16.900e-9845.76hypothetical protein THAOC_12982 [Thalassiosira oc... [more]
GAX22215.16.500e-9644.21flap endonuclease-1 [Fistulifera solaris][more]
GAX19694.13.600e-9444.21flap endonuclease-1 [Fistulifera solaris][more]
XP_002183226.11.400e-9343.06predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002292004.15.700e-9242.59exonuclease [Thalassiosira pseudonana CCMP1335] >B... [more]
OQR97778.16.300e-9142.41flap endonuclease 1 [Achlya hypogyna][more]
XP_012198398.16.900e-9042.20hypothetical protein SPRG_04596 [Saprolegnia paras... [more]
OQR90044.13.400e-8941.91flap endonuclease 1 [Thraustotheca clavata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007494NSK007494Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01570.1NO23G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|308069gene_10034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01570.1NO23G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01570 ID=NO23G01570|Name=NO23G01570|organism=Nannochloropsis oceanica|type=gene|length=4392bp
CACAGCACACGCGCAGTCACATACACGCCACTTAAAACTGAGTCAGAGAT
GGGAATTAAAGGCTTGACAAAGCTCATAGCAGACGAGGCTCCCGATGCTA
TTAAGGAGCACAAGgtaagcaaatcagcctcttactttccacctgcctca
tgctcccctcacttctcctctttccacccttctcatctctctcttcttcc
cagGTCGAGCACTACAACGGGCGCATCATTGCTGTCGATGCCTCTATGGC
CATCTATCAATTTCTGgtgcggaaggagggaagggagacgggaagagagg
aaggcgcgaacaaaaacaatgaagggagaggaaagggaactggggtgtaa
tgaactacgctcggtccaccttcccttcttcacgagcatatcttcaccat
cattcattcctgcctttctgctccatctgtcataattctgctgacgcaac
atccttgcctccctccctcgtccagATCGCCATCCGCCATGGCAACAGCG
GCGGGGCCGCCGCCCAGCTGACCAACGAGGCGGGAGAGgtacgtgttaag
gggtggaatgagacgggtatcgatcacaaatgacgggaaaagtgagaaat
gagataagaggcggatggagtgacacacatacacgcacgcattcccattt
ggtgagatttgggctgctcaacttccctcctccgaaccctccctccctcc
ctccctccctccatccatccctcagGTCACATCCCACATCCAAGGGCTCT
TCAACCGCACCATCCGCATGCTCTCCTCGGGCATCAAGCCAGTATTCGTC
TTTGACGGCAAGCCTCCTACCCTGAAGgtaccccccttcctccctccctc
cctccctccctcagcccatgcatccgtcactctcatctctccctccctca
ctcactcactcactcactcactccctcccttcctacctttcacagGGAGG
AGAATTGGACAAGCGCCGCGAGAAGCGCGAAAAAGCCGAAGCCGACCTCA
AGAAGgcacgttaccctccccccctccccccaccttccctccattcctcc
ttcaggcccgacacaagataggctcaccctatcttcctctctttctccct
ccctctctgaccacagGCACAGGAGGAGGCTAACGTCGAGGAGCAAGACC
GGCAGAACAAGCGGCTGGTGCGCGCTGGGAAGAAGgtacgtctgaaattc
agggaggaaaggagggaggaagggaaggagggagggaagaaagggaccat
ggttttggcgcgtcactaaaatgcagaccgtcttaacatgacatttctcc
cactccctccttccgtctcaccctcttcctccctccctccctccctccct
ccctccctcccttcccaagGAATCCGCCGACTGCAAACGTCTTCTGGAGC
TGATGGGCGTACCTTTTCTCGACGCTCCCTGCGAGGCCGAGGCCCAGTGC
GCGGGGCTCGCCAAGgcaagcaagcgctccctcaagccctccctcaagcc
ctccttcaagccctgcctccttccctgtgaaattcgtatggctgtcttac
tttctccctccctccctccctccctccctccctccctccctccctccctc
cctcccctttccagATCAGCAAGGTTTTCGCCGTTGCCACCGAAGACACC
GACACCCTCACATTCGCCACgtgcgtgcccgtcctccctccctccctccc
tccctcccttccttcctcccttcctccgctcctcagaactgggttctcac
cttccctccctccctccctccctccctccctctctccctccctccctcag
GCCGAGGCTCCTCAGAAACATGACCAGCGCCGGCGATAATCCCATCAAGG
AAATCGACTATAAGAAGgcgcgtgccctccctcccttcctccctctctcc
ctcctccctctttctttgtgaccgaacgaaagcaacgccgcgttcgaaag
agacctttccttgtccattgcactcccaaatatccaaacgcatgcacagc
acatccataacaacagcagaaggaggagatggataagtcagcgggacaat
ccatccactcactcaatcatcctcctgaaacagGTGTTGGAGGGCCTGCA
GCTGACTCCTTCCCAATTCATCGACCTCTGCATTCTCATGGGCTGCGACT
ACACCAGTTCCATCCGCGGTATTGGGCCCAAATCCGCCCTCAATCTCATT
AAAAAACACGGCGATATTGAGACCATCCTCAAGCACCTGCCCAAGgtacg
ccctccctccctccctccctctctccctccctccctccctccctccgcat
gacaatcttgaacaaccaagtcgcccctctcttcatgttcttgcttcacc
tccctccctccctccctccctccctccctccctccctccctccctcccac
ccttcagGACAAGTTCCAGATCCCTCCCGAATGGCTCCCTCGCGTCCGAG
TGCGCAAGGAAAAAAGCGCTGTCTCGTCCCCCTCTTCCTCCCTCCCGCCC
TCCCTCCCTCTCTCCTCCTCGCCCTCGACGGAGGAGATGCCTGCCGCTGG
TGCTGCCACTGCTGCTTCGGGAGAGGAGGGAGGGAGGGAGGGAGAGGAGG
AGGCCGAGGCAGTCAATGCCCGCGAGACGGCGCCGGATGAGAAGGAAAAG
ACTGTAGTGGGGGAGGTGATGGAGgtagggagggagggagggagggcggg
cgggagggcgggcggatgaagattatcaagagaggacggaagagcgattt
gctctattgacatcaccacacccacacgcacgtactctgacagGAGGAGG
CGGAGAAGGCCGTGGTCGAGgtcaggggggagggagggagggagggaggg
agggagggagggagggagggagggagggagggagggtaagaggatactgt
cgattacaccattcgcccaccctccctcttttcctccctccccccctccc
tcacttttttcccctgctgcagAACGAGGAGGAGGTGTTGGTGGAAGGCG
CGGAAGAGGGCAGCCACGGCGCGGCTGAGGACACGGCGGGGGAGGACGCG
GGGGAGGAAGGGAAGGAAGGCGAGGAGTGGGAATGGGTCGACCAGgcaag
ggatggagggagggagggagggagggagggagggagggagggagggaggg
agggatggagaagtttgaaagaatttgctgtctattccacacaacaactt
ctgacaactcacattcttcctttcctccctcactccctctctccctccct
ccctccctagACACCCGCCTACGTAATGGCCCGCACTCTCTTCTCCCACC
CCGAGATTCACGACCCGGCAGAGCAGAGCTTCAAGTGGACTgtagggagg
gaggcgaggagggagggaggaagggagggagggagggagggaatacagtg
gatattaaaacgccaacatcgcacatgggacaaaagctctctgccacaca
cccttccctccctccctccctccttccctccctcggttctcagGAGCCGA
ACGAGGCCGGGCTAGAGGAGTTTCTCATCGACAATTTGGGCTTCAACCCC
GACCGAGTCAAGTCAGGCATTGCCAAGCTCAAGgtcaaagggagggaggg
agggagggagggaggaagggagggagggcggacgtcggactcttggcacc
accgtcgctttttctcactcacctcaccttccctccctttttcccatccc
tacccctcctttccctccctccctccctccctctctccctccttccagGC
ATCGCGCGGTGCGATGCAGCAGAAACGACTGGATTCGTTCTTCAAGCCGT
CGGGCTCGACCTCCTCCTCCTCCTCCGCGCTCAAGCGCAAGGAAGCCCCG
GCGGTGGGGAAGGGGAAGGGGAAGGGGAAGGCGGGAGGGAAGAAGAGGTA
GAGAGAGAGAGATAGCATGAGTATCCGACGATTTGAAGAGGGAGGGGTAG
GGGCGACATGGTGACGGCCAGTGGGCAATCAGAGAGCAGGGGGTGGGGAA
AAGTAGGGCGTTGCTTGATTACATTCATTTATCCATTGATGTATTATGGA
GAAGGGAGGCAGCTAACGCCTCCCCTGGGTTACCAGGGGAGGGAGAGAGG
GAGGGAGAGAAGAGAGTGTGGATGCGTTGTTTGATTACATTCATTTATCC
ACTTATGTATTATGGAGAGGAGAGGCAGCTAACGCCGCCCCTGGGTTACG
AGGGAGGGAGAGAGGGAGGGAGAGCTGAGAAGGTGGATGCAGCCATGGGC
TGGATCTCTAGTGCGTGTGGGAGATACGTAAAAGAGCAGAAGAAAGATCG
AAAGATCGAAAGATCGAAAGAAGTACAGAGCGACAGAACGACAGGAAGAT
AGGGAAAAAAGTAAGAGGGGGAAAGATTATATGAACGTGGTA
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protein sequence of NO23G01570.1

>NO23G01570.1-protein ID=NO23G01570.1-protein|Name=NO23G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MGIKGLTKLIADEAPDAIKEHKVEHYNGRIIAVDASMAIYQFLIAIRHGN
SGGAAAQLTNEAGEVTSHIQGLFNRTIRMLSSGIKPVFVFDGKPPTLKGG
ELDKRREKREKAEADLKKAQEEANVEEQDRQNKRLVRAGKKESADCKRLL
ELMGVPFLDAPCEAEAQCAGLAKISKVFAVATEDTDTLTFATPRLLRNMT
SAGDNPIKEIDYKKVLEGLQLTPSQFIDLCILMGCDYTSSIRGIGPKSAL
NLIKKHGDIETILKHLPKDKFQIPPEWLPRVRVRKEKSAVSSPSSSLPPS
LPLSSSPSTEEMPAAGAATAASGEEGGREGEEEAEAVNARETAPDEKEKT
VVGEVMEEEAEKAVVENEEEVLVEGAEEGSHGAAEDTAGEDAGEEGKEGE
EWEWVDQTPAYVMARTLFSHPEIHDPAEQSFKWTEPNEAGLEEFLIDNLG
FNPDRVKSGIAKLKASRGAMQQKRLDSFFKPSGSTSSSSSALKRKEAPAV
GKGKGKGKAGGKKR*
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Synonyms
Publications