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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:574469..577144 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01560.2 vs.
Match: EWM27835.1 (naphthoate synthase [Nannochloropsis gaditana]) HSP 1 Score: 555.8 bits (1431), Expect = 8.100e-155 Identity = 271/300 (90.33%), Postives = 284/300 (94.67%), Query Frame = 0
Query: 1 MAPSLLRTPPPPTPRRDGFHRTSSGPAAWEDRSQALGLTDVIYRVAPQEGIAKLSINRPSVRNAFRPTTIRELKRCVALAQDDLQVGVIILTGEGDEAFCSGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKPVVAMVAGYAIGGGHILHMLCDLTISADNAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREIWFLCRFYSAQEALEMGLVNTVVPLASLEGETLKWCRRIMENSPTAIACCKAALNADEDGAAGIMELAGNATRLFYLSEEGKEGRNAFLQKRKPAFRSLPT 301
M+ R PPPTPRRD FH TS PAAW+D+S ALGLTDVIYR AP+EGIAKLSINRPS+RNAFRPTTIRELKRC+ALAQDDL++GVIILTGEGDEAFCSGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKP++AMVAGYAIGGGHILHMLCDLTI A+NAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREIWFLCRFYSA EA +MGLVNTVVPLASLEGETLKWCRRIMENSPTAIACCKAALNADEDGAAGIMELAGNATRLFYLSEEGKEGRNAFLQKRKPAFR+L T
Sbjct: 1 MSEHAARKAPPPTPRRDAFHLTSCAPAAWQDQSTALGLTDVIYRTAPEEGIAKLSINRPSLRNAFRPTTIRELKRCLALAQDDLKIGVIILTGEGDEAFCSGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKPIIAMVAGYAIGGGHILHMLCDLTICAENAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREIWFLCRFYSAHEAQDMGLVNTVVPLASLEGETLKWCRRIMENSPTAIACCKAALNADEDGAAGIMELAGNATRLFYLSEEGKEGRNAFLQKRKPAFRALST 300
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01560.2 ID=NO23G01560.2|Name=NO23G01560.2|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp ACAGGTAGTTCTACAACACCTCTCGCATGGCTCCTTCATTGTTACGCACC CCGCCTCCTCCGACGCCTCGTCGCGACGGCTTTCACCGGACCTCTTCCGG CCCAGCGGCATGGGAAGATCGAAGCCAAGCCCTTGGGCTGACCGACGTCA TTTATCGCGTCGCACCGCAAGAGGGTATCGCCAAGCTCAGCATTAACCGC CCGTCAGTTAGAAATGCGTTTCGTCCCACTACCATTCGGGAGCTCAAGCG CTGCGTGGCTTTGGCCCAGGATGACTTGCAAGTGGGCGTTATCATACTGA CTGGGGAAGGCGACGAGGCCTTCTGTTCCGGCGGCGATCAAAGTGTGCGG GGAGAGGGGGGGTACGACGATGGGAGCGAGGAGGCACCGAGGCTTACGGT GTTGGATTTGCAGGTGCAAATGCGGCGGTGTCCTAAGCCTGTGGTTGCCA TGGTGGCTGGGTATGCCATTGGGGGCGGGCACATTTTGCACATGTTGTGC GATTTGACGATAAGCGCCGACAACGCCGTCTTTGGACAGACAGGGCCTCG GGTTGGCAGTTTCGATGCAGGCTACGGCAGCAGCCATATGGCCCGCCTGG TGGGACAGAAAAAAGCCCGCGAAATTTGGTTTCTGTGTCGGTTTTATTCA GCGCAAGAGGCGCTTGAGATGGGGCTGGTAAATACCGTCGTGCCCTTGGC GTCCCTGGAGGGCGAGACGCTCAAGTGGTGCCGGCGGATAATGGAGAATT CCCCCACGGCCATCGCATGCTGCAAGGCTGCACTCAACGCGGATGAGGAC GGAGCGGCGGGCATCATGGAGCTGGCGGGCAATGCCACGCGGTTATTTTA TTTGAGCGAGGAAGGAAAAGAGGGTCGCAACGCGTTTTTGCAGAAACGGA AGCCCGCCTTTCGATCCTTGCCCACCTCGAAGCTGTGAAGAGGCGTGAGA AGGTGGTGGAATGAGGGATAGGAGGGGCGAGGCATGTGTGATGTGAAGGG GAGGAGGGACGAGATATAGGGAGGGGGAGGCATGGGTGCAGGAGAAGACA GTGAAGGAGGGAGGGAGGGAGAAGGGAGGGAGGGAGTGGGGGGGAAGCCA GTGAAATTTTCTCTGCCTTTGGACAGAAAATAGAAACAAAAAAGAAGGGA AGACACGAAGGGATGAGCATTGTCATCGCGCCATTTACCACG back to topprotein sequence of NO23G01560.2 >NO23G01560.2-protein ID=NO23G01560.2-protein|Name=NO23G01560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp MAPSLLRTPPPPTPRRDGFHRTSSGPAAWEDRSQALGLTDVIYRVAPQEG IAKLSINRPSVRNAFRPTTIRELKRCVALAQDDLQVGVIILTGEGDEAFC SGGDQSVRGEGGYDDGSEEAPRLTVLDLQVQMRRCPKPVVAMVAGYAIGG GHILHMLCDLTISADNAVFGQTGPRVGSFDAGYGSSHMARLVGQKKAREI WFLCRFYSAQEALEMGLVNTVVPLASLEGETLKWCRRIMENSPTAIACCK AALNADEDGAAGIMELAGNATRLFYLSEEGKEGRNAFLQKRKPAFRSLPT SKL* back to topmRNA from alignment at chr23:574469..577144+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01560.2 ID=NO23G01560.2|Name=NO23G01560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2676bp|location=Sequence derived from alignment at chr23:574469..577144+ (Nannochloropsis oceanica) ACAGGTAGTTCTACAACACCTCTCGCATGGCTCCTTCATTGTTACGCACC
CCGCCTCCTCCGACGCCTCGTCGCGACGGCTTTCACCGGGTGCGTTTTAG
CCTCCTCACTCCGCGCATTCTGCCTACAGTCTCACCCTCCATGTCTTCCT
GCCCCTGTCCCGCCGTCTCTCCTCGCCCTTTCCTCTTGTGCCCTAATTTG
TAATTTCTCACATTCATTTCGCTTTCTACCTTCCCATTTTCTGCTTTCAC
GCAATGAAAAAGACCTCTTCCGGCCCAGCGGCATGGGAAGATCGAAGCCA
AGCCCTTGGGCTGACCGACGTCATTTATCGCGTCGCACCGCAAGAGGGTA
ATAACGCGAAAGAGAAAGGGAAAAGGGTGAAGAAGGAGCGGAGAGATAGC
AACTAAGAAGGGGAAATGGGAACCACGAGCTCCAGCTTCCTCAACCTGTC
ATCCATCGCATTCATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCGCTCCC
TTCCTCCCCTCTCTTTCCTGGTTTCAGGTATCGCCAAGCTCAGCATTAAC
CGCCCGTCAGTTAGAAATGCGTTTCGTCCCACTACCATTCGGGAGCTCAA
GCGCTGCGTGGCTTTGGCCCAGGATGACTTGCAAGTGGGCGTTATCATAC
TGACTGGTAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGGA
TGGCTGCAAAGATCCATCTCTGAAATTTAAGATGGCTGCCTATTTATTCT
TAGTCGTAATTGTAATCATTATTTGGGTCTTAGCATCGATTTTCACCTCT
ACCTTAGTCTCAACTTTACATCTTGCCCTTCTTACTACTATTTTCCTTCT
CGCACAGGGGAAGGCGACGAGGCCTTCTGTTCCGGCGGCGATCAAAGTGT
GCGGGGAGAGGGGGGGTACGACGATGGGAGCGAGGAGGCACCGAGGCTTA
CGGTGTTGGATTTGCAGGTAGAGAGGGAGGGAGGAAGAGAGGAAGGGAGG
GAGAGAAGGAGGGAAAAGGAATGGCACCAGGCTATGTCCGGGCATCTTAT
CAAGACTCCGCCCTCTATCCTTTTCTCTCTTCCTCCTTCCCTCCCTCCCT
CAGGTGCAAATGCGGCGGTGTCCTAAGCCTGTGGTTGCCATGGTGGCTGG
GTATGCCATTGGGGGCGGGCACATTTTGCACATGTTGTGCGATTTGACGA
TAAGCGCCGACAACGCCGTCTTTGGACAGACAGGGCCTCGGGTTGGCAGG
TGGGGTGGACGAGTGGATGGTTGAATGGGTGGGGGTGTGTGGGTAGGTGG
GCAGGTGGATGGGAGGTATGCGCGGTAGATGGCGATGTTTTCTTCCTTTT
CCTCCCTTTCTCGTTCCCTCCTTCCCTCCTTTCCTCCTTCCCTGCCTGCT
CATCTCCTTCTCTGCCCTCACACCTCCCCCATGCCATGCCTCTAAAATTC
TCACGTGTCATTTTCCCCCTTCCTCTTTCCTTTCTTGTCCATTCCTCTTT
TCCTCCCTCCCCCCTCCTCAAGTTTCGATGCAGGCTACGGCAGCAGCCAT
ATGGCCCGCCTGGTGGGACAGAAAAAAGCCCGCGAAATTTGGTTTCTGTG
TCGGTTTTATTCAGCGCAAGAGGCGCTTGAGATGGGGGTAAGGAGGCAGA
GAGAGAGAAAGGGAAGAAGGGAGGGGAAGCGTCTTTCTTGTTCCATTTGT
GAGTGGTGACCACCATCGCCCCCCTGACTTTACCCTCCCTCCCTCCCTCC
CTGCCTGCCTTCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTAGCTGGTAAATACCGTCGTGCCCTTGGCGTCCC
TGGAGGGCGAGACGCTCAAGTGGTGCCGGCGGATAATGGAGAATTCCCCC
ACGGCCATCGCATGCTGCAAGGCTGCACTCAACGCGGATGAGGACGGAGC
GGCGGGGTAAGGAGGGAGGGAAGGAAGAAGGGAAGGAAGGAAAGGAGGAT
AAGCGACTCTCTCACTCTATTTAAGTCTTGTTACTCACACCCCCGTACCC
ACACACCCACTCACCTCCCTTTAACCCCACACCTATAACCCTCGGGGATA
AGCGATTTTCTCACTCCATTTAAGTCTCCCCCTCTCACCCTCCCCCTCTT
CCATCTATCTGCCGGTGGTGATAAGGCGGGCCGCCGTCCTCCTCTTCCTC
TCATCCCTCCGCGATAGTCGAACCTCCCTCCTCAAACCCACACCTAACCC
TCCGTCCCCCCCCACACCCTCCCACTCATTTTCCCCCTCACACAGCATCA
TGGAGCTGGCGGGCAATGCCACGCGGTTATTTTATTTGAGCGAGGAAGGA
AAAGAGGGTCGCAACGCGTTTTTGCAGAAACGGAAGCCCGCCTTTCGATC
CTTGCCCACCTCGAAGCTGTGAAGAGGCGTGAGAAGGTGGTGGAATGAGG
GATAGGAGGGGCGAGGCATGTGTGATGTGAAGGGGAGGAGGGACGAGATA
TAGGGAGGGGGAGGCATGGGTGCAGGAGAAGACAGTGAAGGAGGGAGGGA
GGGAGAAGGGAGGGAGGGAGTGGGGGGGAAGCCAGTGAAATTTTCTCTGC
CTTTGGACAGAAAATAGAAACAAAAAAGAAGGGAAGACACGAAGGGATGA
GCATTGTCATCGCGCCATTTACCACG back to topCoding sequence (CDS) from alignment at chr23:574469..577144+ >NO23G01560.2 ID=NO23G01560.2|Name=NO23G01560.2|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr23:574469..577144+ (Nannochloropsis oceanica) ATGGCTCCTTCATTGTTACGCACCCCGCCTCCTCCGACGCCTCGTCGCGA CGGCTTTCACCGGACCTCTTCCGGCCCAGCGGCATGGGAAGATCGAAGCC AAGCCCTTGGGCTGACCGACGTCATTTATCGCGTCGCACCGCAAGAGGGT ATCGCCAAGCTCAGCATTAACCGCCCGTCAGTTAGAAATGCGTTTCGTCC CACTACCATTCGGGAGCTCAAGCGCTGCGTGGCTTTGGCCCAGGATGACT TGCAAGTGGGCGTTATCATACTGACTGGGGAAGGCGACGAGGCCTTCTGT TCCGGCGGCGATCAAAGTGTGCGGGGAGAGGGGGGGTACGACGATGGGAG CGAGGAGGCACCGAGGCTTACGGTGTTGGATTTGCAGGTGCAAATGCGGC GGTGTCCTAAGCCTGTGGTTGCCATGGTGGCTGGGTATGCCATTGGGGGC GGGCACATTTTGCACATGTTGTGCGATTTGACGATAAGCGCCGACAACGC CGTCTTTGGACAGACAGGGCCTCGGGTTGGCAGTTTCGATGCAGGCTACG GCAGCAGCCATATGGCCCGCCTGGTGGGACAGAAAAAAGCCCGCGAAATT TGGTTTCTGTGTCGGTTTTATTCAGCGCAAGAGGCGCTTGAGATGGGGCT GGTAAATACCGTCGTGCCCTTGGCGTCCCTGGAGGGCGAGACGCTCAAGT GGTGCCGGCGGATAATGGAGAATTCCCCCACGGCCATCGCATGCTGCAAG GCTGCACTCAACGCGGATGAGGACGGAGCGGCGGGCATCATGGAGCTGGC GGGCAATGCCACGCGGTTATTTTATTTGAGCGAGGAAGGAAAAGAGGGTC GCAACGCGTTTTTGCAGAAACGGAAGCCCGCCTTTCGATCCTTGCCCACC TCGAAGCTGTGA back to top
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