NO23G01400.1, NO23G01400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01400.1
Unique NameNO23G01400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1612
Alignment locationchr23:510089..512429 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:510089..512429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01400.1 vs.
Match: EWM22909.1 (hypothetical protein Naga_100625g2 [Nannochloropsis gaditana])

HSP 1 Score: 162.9 bits (411), Expect = 7.100e-37
Identity = 80/142 (56.34%), Postives = 101/142 (71.13%), Query Frame = 0 
Query:    1 MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKMLIDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHLQDLGEL----SAEEKPKCWFNCQMETCDAWDVPHTTEQEECV 139
            M+ S   L LA A+ ++G  G  +A  +RG E         VNGEKLKMLIDCFASYM+DASYR DNS+ +GC D EI++CRTDSG +DHFC F+GTN+L D+GE+      +  P+CWFNCQMETC+AW+ PH  EQE+CV
Sbjct:    1 MKLSIPSLFLACAVFTLGK-GTVNAGSMRGAEKK-------VNGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWEFPHNEEQEKCV 134
The following BLAST results are available for this feature:
BLAST of NO23G01400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22909.17.100e-3756.34hypothetical protein Naga_100625g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01400NO23G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01400.1NO23G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01400.1.cds1NO23G01400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01400.1.cds2NO23G01400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01400.1.cds3NO23G01400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01400.1.cds4NO23G01400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01400.1.cds5NO23G01400.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01400.1 ID=NO23G01400.1|Name=NO23G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp
TGATGTGCCAAATCAGCAAAAGCCTCAAGATAATTCAAGTGCAGAAAACC
TGAATATCCTGCCCATGGGGCTGTGGTGCTCTACACTGAACAGTGTCACC
CTGCTTCGGCAAGCGCCATAAAGTGCCCTCCCTGAGGATACACTCAAAAG
AAGCGAGAGGGCGACACTAGGCAGACGATCAATCGGAGGCCCATAATCTG
TTTTTCCACTTTACATGCTCACTCTATATGTCATGCCTTTCGTCCTCGTT
TCTTTGATCTACATAATGTCCAGCACGGGTTTTCCATCTGTTTCCTACTT
GCATTCTTATTGCGATGGTTGATCGGCCCGACTGTATTGGAAAGACATGC
TCCCGAGAGACCCGCACGCGACACCCCGAAACACACTCATCATCCCCCCG
TCCTGGTGCATACAAATTTTAGGTGGCCGCATGCATGGGGCAGGGGCAGG
ACCAGACACTACAGCTCTACTCGTGCCACACTGCCAAAGTCCCTGACTGC
GCTTTCCATTCACCGTCCCTCCCTCCATCCCGCACGTGACTTACGTACAA
AGCTTCCCCCGTCCTGTCCGTACACAAAGGCATACATCCACAGGCACCGC
CACCCACCCCCCCATCAAAAATGAGGCCTTCCTTCTGTTTCCTTCTCCTG
GCTTCTGCCATGCTCTCCGTGGGCACCGCAGGCGCCGAGTCTGCATCCTA
CCTGCGCGGCTTGGAGGCTGCGAAGCAGCCCCCAGCCCCCGTCGTAAACG
GCGAGAAGCTCAAGATGCTCATCGACTGTTTCGCCAGCTACATGCAAGAC
GCTTCCTACCGCCCGGACAACAGCCAGCTGAACGGCTGCTGGGATTACGA
GATCATTCACTGCCGCACCGATAGTGGTCAACATGATCACTTCTGTCTCT
TCAACGGCACGAACCATCTGCAAGACCTGGGAGAGCTCTCTGCGGAGGAA
AAGCCCAAGTGCTGGTTCAACTGTCAGATGGAGACATGCGATGCCTGGGA
CGTTCCCCATACCACGGAGCAGGAGGAATGCGTCGACGACCTCTAGGATA
TCTAGACACGCGGAAAGATCTCCCCTCCCTTCCCCTCCCTCCCTCCCTCC
TTGAATACCTGGTTACCTCAAGACAATCCTTTTTTCTTCATATTTCTCGT
TGATGTTTAAGCGGGGATAGAGGGAGAGAGAGAGAGAGGATGAAGGGGAC
TACACGGTGAAGGTGCATCGGGCGGAAGAGGGAGGGTCGGGAGGGAAAAA
CGGAAGTGATGTGTTGTGTTGTAATGTTGTGAAGTGTTTCCACACACCAT
CTGGTAAAGCGAGAAATATTAAGAGAGGCCAATATGCGTTACCTGAGGGT
GGCTGTATCAGCTCAAAGATGAAAGTGTTCTGAAATTAGTGTTCTAGGAC
AAGGAGGGGGCGGAGGGATTCTATGATGTGTTGTAATGTTTTAAGGTGTT
TCTACACATCATTTGATAAAACAATTGATGTTTCGGGGGAATGTATGTTA
CCTAAGGGTGGCTCTACCGGTTCAACGATAAAAGAACTCTGAAGTGAAAA
GAGGGAAGAAGAGACAAGGAGGAGAACATGGGAAGAAGGCGGGAGTGTGA
TTTTGTGGACGT
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protein sequence of NO23G01400.1

>NO23G01400.1-protein ID=NO23G01400.1-protein|Name=NO23G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKML
IDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHL
QDLGELSAEEKPKCWFNCQMETCDAWDVPHTTEQEECVDDL*
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mRNA from alignment at chr23:510089..512429+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01400.1 ID=NO23G01400.1|Name=NO23G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2341bp|location=Sequence derived from alignment at chr23:510089..512429+ (Nannochloropsis oceanica)
TGATGTGCCAAATCAGCAAAAGCCTCAAGATAATTCAAGTGCAGAAAACC
TGAATATCCTGCCCATGGGGCTGTGGTGCTCTACACTGAACAGTGTCACC
CTGCTTCGGCAAGCGCCATAAAGTGCCCTCCCTGAGGATACACTCAAAAG
AAGCGAGAGGGCGACACTAGGCAGACGATCAATCGGAGGCCCATAATCTG
TTTTTCCACTTTACATGCTCACTCTATATGTCATGCCTTTCGTCCTCGTT
TCTTTGATCTACATAATGTCCAGCACGGGTTTTCCATCTGTTTCCTACTT
GCATTCTTATTGCGATGGTTGATCGGCCCGACTGTATTGGAAAGACATGC
TCCCGAGAGACCCGCACGCGACACCCCGAAACACACTCATCATCCCCCCG
TCCTGGTGCATACAAATTTTAGGTGGCCGCATGCATGGGGCAGGGGCAGG
ACCAGACACTACAGCTCTACTCGTGCCACACTGCCAAAGTCCCTGACTGC
GCTTTCCATTCACCGTCCCTCCCTCCATCCCGCACGTGACTTACGTACAA
AGCTTCCCCCGTCCTGTCCGTACACAAAGGCATACATCCACAGGCACCGC
CACCCACCCCCCCATCAAAAATGAGGCCTTCCTTCTGTTTCCTTCTCCTG
GCTTCTGCCATGCTCTCCGTGGGCACCGCAGGCGCCGAGTCTGCATCCTA
CCTGCGCGGCTTGGAGGCTGCGAAGCAGCGTGAGTAGTCATAAGTAGAGA
ACATGTGTGGGATTATCACTTTATCAATGCGCGGGATCTAGACCATAGAA
ACAGGTTCACTCAGGCACATAAACATAATACAAGAGAGGGTGTATCAGTT
ATCATTCCGTCATTCATCTCATCGCCTCGATCTATTTATATCATTCATCC
CTCCACAAACACTTATGGACTCGTGCAGCCCCAGCCCCCGTCGTAAACGG
CGAGAAGCTCAAGATGCTCATCGACTGTTTCGCCAGGTACGGAGAAAGTG
GAAAAGGGGAGGTTAAAAGAAACTGTCTATGCATGCAGTCACAAAGAAGG
CAGGGAGGGGGGAAGGGAGGGACAGAAGGAGGATGAGGGGCATATACGGA
GCGCCCGACTTCAATGGACACGAGAGAAGCAAGCCTTTGAAATCCTTCCT
CCCTCTTTCACTCTCCCCCGTCATGGCAGCTACATGCAAGACGCTTCCTA
CCGCCCGGACAACAGCCAGCTGAACGGCTGCTGGGATTACGAGATCATTC
ACTGCCGCACCGATAGGTAACCACCGTGATGGGACGGGAGGGAGTGCGAA
AGGAAGGATATTCTTAATGGTAGGCATAACATCTCACAGAATATAAAAGA
AGACGGAATTTTTCTCTCTTCTTGACGGCTTGGGTGACTGAGGGCGAGTT
GGGAGAGGTCATTCAATGGCAAGTTTTCATTCTCACCCTCCCTCCCTCCG
TCCACGACAATAACAACAAAAAACAACAGTGGTCAACATGATCACTTCTG
TCTCTTCAACGGCACGAACCATCTGCAAGACCTGGGAGAGCTCTCTGCGG
AGGAAAAGCCCAAGTGCTGGTTCAACTGTCAGGTAAAGGAGGGAGGCTGG
GAGGGAGGGGGGATGAGAGAGTGCCTCTCCGCCTGTTCCAAGGGGGACTT
CCACAAAATACACATTGTACCCCACCCCTTTCCTCCCCTTTCTTCTTTTT
TCCTAGATGGAGACATGCGATGCCTGGGACGTTCCCCATACCACGGAGCA
GGAGGAATGCGTCGACGACCTCTAGGATATCTAGACACGCGGAAAGATCT
CCCCTCCCTTCCCCTCCCTCCCTCCCTCCTTGAATACCTGGTTACCTCAA
GACAATCCTTTTTTCTTCATATTTCTCGTTGATGTTTAAGCGGGGATAGA
GGGAGAGAGAGAGAGAGGATGAAGGGGACTACACGGTGAAGGTGCATCGG
GCGGAAGAGGGAGGGTCGGGAGGGAAAAACGGAAGTGATGTGTTGTGTTG
TAATGTTGTGAAGTGTTTCCACACACCATCTGGTAAAGCGAGAAATATTA
AGAGAGGCCAATATGCGTTACCTGAGGGTGGCTGTATCAGCTCAAAGATG
AAAGTGTTCTGAAATTAGTGTTCTAGGACAAGGAGGGGGCGGAGGGATTC
TATGATGTGTTGTAATGTTTTAAGGTGTTTCTACACATCATTTGATAAAA
CAATTGATGTTTCGGGGGAATGTATGTTACCTAAGGGTGGCTCTACCGGT
TCAACGATAAAAGAACTCTGAAGTGAAAAGAGGGAAGAAGAGACAAGGAG
GAGAACATGGGAAGAAGGCGGGAGTGTGATTTTGTGGACGT
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Coding sequence (CDS) from alignment at chr23:510089..512429+

>NO23G01400.1 ID=NO23G01400.1|Name=NO23G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr23:510089..512429+ (Nannochloropsis oceanica)
ATGAGGCCTTCCTTCTGTTTCCTTCTCCTGGCTTCTGCCATGCTCTCCGT
GGGCACCGCAGGCGCCGAGTCTGCATCCTACCTGCGCGGCTTGGAGGCTG
CGAAGCAGCCCCCAGCCCCCGTCGTAAACGGCGAGAAGCTCAAGATGCTC
ATCGACTGTTTCGCCAGCTACATGCAAGACGCTTCCTACCGCCCGGACAA
CAGCCAGCTGAACGGCTGCTGGGATTACGAGATCATTCACTGCCGCACCG
ATAGTGGTCAACATGATCACTTCTGTCTCTTCAACGGCACGAACCATCTG
CAAGACCTGGGAGAGCTCTCTGCGGAGGAAAAGCCCAAGTGCTGGTTCAA
CTGTCAGATGGAGACATGCGATGCCTGGGACGTTCCCCATACCACGGAGC
AGGAGGAATGCGTCGACGACCTCTAG
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Synonyms
Publications