NO23G01400, NO23G01400 (gene) Nannochloropsis oceanica

Overview
NameNO23G01400
Unique NameNO23G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2341
Alignment locationchr23:510089..512429 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:510089..512429 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G01400 vs. NCBI_GenBank
Match: EWM22909.1 (hypothetical protein Naga_100625g2 [Nannochloropsis gaditana])

HSP 1 Score: 131.7 bits (330), Expect = 2.700e-27
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 0 
Query:    1 MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKMLIDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHLQDLGEL----SAEEKPKCWFNCQVKE-GGWE 127
            M+ S   L LA A+ ++G  G  +A  +RG E         VNGEKLKMLIDCFASYM+DASYR DNS+ +GC D EI++CRTDSG +DHFC F+GTN+L D+GE+      +  P+CWFNCQ++    WE
Sbjct:    1 MKLSIPSLFLACAVFTLG-KGTVNAGSMRGAEKK-------VNGEKLKMLIDCFASYMEDASYRADNSKRDGCTDAEILYCRTDSGYNDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWE 123
[Close]
BLAST of NO23G01400 vs. NCBI_GenBank
Match: XP_005855369.1 (hypothetical protein NGA_0118000 [Nannochloropsis gaditana CCMP526] >EKU20987.1 hypothetical protein NGA_0118000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-9
Identity = 49/131 (37.40%), Postives = 63/131 (48.09%), Query Frame = 0 
Query:    1 MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKMLIDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHLQDLGEL----SAEEKPKCWFNCQVKE-GGWE 127
            M+ S   L LA A+ ++G  G  +A  +RG E         VNGEKLKMLIDCFA                             SG  DHFC F+GTN+L D+GE+      +  P+CWFNCQ++    WE
Sbjct:    1 MKLSIPSLFLACAVFTLG-KGTVNAGSMRGAEKK-------VNGEKLKMLIDCFA-----------------------------SGYKDHFCRFDGTNNLIDMGEIPLLGPQDAVPECWFNCQMETCNAWE 94
The following BLAST results are available for this feature:
BLAST of NO23G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22909.12.700e-2752.67hypothetical protein Naga_100625g2 [Nannochloropsi... [more]
XP_005855369.14.400e-937.40hypothetical protein NGA_0118000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01400.1NO23G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01400.2NO23G01400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608754gene_10053Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100625g2gene7541Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01400.1NO23G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01400.2NO23G01400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01400 ID=NO23G01400|Name=NO23G01400|organism=Nannochloropsis oceanica|type=gene|length=2341bp
TGATGTGCCAAATCAGCAAAAGCCTCAAGATAATTCAAGTGCAGAAAACC
TGAATATCCTGCCCATGGGGCTGTGGTGCTCTACACTGAACAGTGTCACC
CTGCTTCGGCAAGCGCCATAAAGTGCCCTCCCTGAGGATACACTCAAAAG
AAGCGAGAGGGCGACACTAGGCAGACGATCAATCGGAGGCCCATAATCTG
TTTTTCCACTTTACATGCTCACTCTATATGTCATGCCTTTCGTCCTCGTT
TCTTTGATCTACATAATGTCCAGCACGGGTTTTCCATCTGTTTCCTACTT
GCATTCTTATTGCGATGGTTGATCGGCCCGACTGTATTGGAAAGACATGC
TCCCGAGAGACCCGCACGCGACACCCCGAAACACACTCATCATCCCCCCG
TCCTGGTGCATACAAATTTTAGGTGGCCGCATGCATGGGGCAGGGGCAGG
ACCAGACACTACAGCTCTACTCGTGCCACACTGCCAAAGTCCCTGACTGC
GCTTTCCATTCACCGTCCCTCCCTCCATCCCGCACGTGACTTACGTACAA
AGCTTCCCCCGTCCTGTCCGTACACAAAGGCATACATCCACAGGCACCGC
CACCCACCCCCCCATCAAAAATGAGGCCTTCCTTCTGTTTCCTTCTCCTG
GCTTCTGCCATGCTCTCCGTGGGCACCGCAGGCGCCGAGTCTGCATCCTA
CCTGCGCGGCTTGGAGGCTGCGAAGCAGCgtgagtagtcataagtagaga
acatgtgtgggattatcactttatcaatgcgcgggatctagaccatagaa
acaggttcactcaggcacataaacataatacaagagagggtgtatcagtt
atcattccgtcattcatctcatcgcctcgatctatttatatcattcatcc
ctccacaaacacttatggactcgtgcagCCCCAGCCCCCGTCGTAAACGG
CGAGAAGCTCAAGATGCTCATCGACTGTTTCGCCAGgtacggagaaagtg
gaaaaggggaggttaaaagaaactgtctatgcatgcagtcacaaagaagg
cagggaggggggaagggagggacagaaggaggatgaggggcatatacgga
gcgcccgacttcaatggacacgagagaagcaagcctttgaaatccttcct
ccctctttcactctcccccgtcatggcagCTACATGCAAGACGCTTCCTA
CCGCCCGGACAACAGCCAGCTGAACGGCTGCTGGGATTACGAGATCATTC
ACTGCCGCACCGATAGgtaaccaccgtgatgggacgggagggagtgcgaa
aggaaggatattcttaatggtaggcataacatctcacagaatataaaaga
agacggaatttttctctcttcttgacggcttgggtgactgagggcgagtt
gggagaggtcattcaatggcaagttttcattctcaccctccctccctccg
tccacgacaataacaacaaaaaacaacagTGGTCAACATGATCACTTCTG
TCTCTTCAACGGCACGAACCATCTGCAAGACCTGGGAGAGCTCTCTGCGG
AGGAAAAGCCCAAGTGCTGGTTCAACTGTCAGGTAAAGGAGGGAGGCTGG
GAGGGAGGGGGGATGAGAGAGTGCCTCTCCGCCTGTTCCAAGGGGGACTT
CCACAAAATACACATTGTACCCCACCCCTTTCCTCCCCTTTCTTCTTTTT
TCCTAGATGGAGACATGCGATGCCTGGGACGTTCCCCATACCACGGAGCA
GGAGGAATGCGTCGACGACCTCTAGGATATCTAGACACGCGGAAAGATCT
CCCCTCCCTTCCCCTCCCTCCCTCCCTCCTTGAATACCTGGTTACCTCAA
GACAATCCTTTTTTCTTCATATTTCTCGTTGATGTTTAAGCGGGGATAGA
GGGAGAGAGAGAGAGAGGATGAAGGGGACTACACGGTGAAGGTGCATCGG
GCGGAAGAGGGAGGGTCGGGAGGGAAAAACGGAAGTGATGTGTTGTGTTG
TAATGTTGTGAAGTGTTTCCACACACCATCTGGTAAAGCGAGAAATATTA
AGAGAGGCCAATATGCGTTACCTGAGGGTGGCTGTATCAGCTCAAAGATG
AAAGTGTTCTGAAATTAGTGTTCTAGGACAAGGAGGGGGCGGAGGGATTC
TATGATGTGTTGTAATGTTTTAAGGTGTTTCTACACATCATTTGATAAAA
CAATTGATGTTTCGGGGGAATGTATGTTACCTAAGGGTGGCTCTACCGGT
TCAACGATAAAAGAACTCTGAAGTGAAAAGAGGGAAGAAGAGACAAGGAG
GAGAACATGGGAAGAAGGCGGGAGTGTGATTTTGTGGACGT
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protein sequence of NO23G01400.1

>NO23G01400.1-protein ID=NO23G01400.1-protein|Name=NO23G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKML
IDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHL
QDLGELSAEEKPKCWFNCQMETCDAWDVPHTTEQEECVDDL*
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protein sequence of NO23G01400.2

>NO23G01400.2-protein ID=NO23G01400.2-protein|Name=NO23G01400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MRPSFCFLLLASAMLSVGTAGAESASYLRGLEAAKQPPAPVVNGEKLKML
IDCFASYMQDASYRPDNSQLNGCWDYEIIHCRTDSGQHDHFCLFNGTNHL
QDLGELSAEEKPKCWFNCQVKEGGWEGGGMRECLSACSKGDFHKIHIVPH
PFPPLSSFFLDGDMRCLGRSPYHGAGGMRRRPLGYLDTRKDLPSLPLPPS
LLEYLVTSRQSFFLHISR*
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Synonyms
Publications