NO23G01270.1, NO23G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01270.1
Unique NameNO23G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr23:452541..454762 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:452541..454762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01270NO23G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01270.1NO23G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01270.1.cds1NO23G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01270.1.cds2NO23G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01270.1.cds3NO23G01270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01270.1.cds4NO23G01270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01270.1.cds5NO23G01270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01270.1.cds6NO23G01270.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01270.1.cds7NO23G01270.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01270.1 ID=NO23G01270.1|Name=NO23G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ATGGAACCATCGGCACCATTACCTCCACAGCCCACCTCGTCCTCAAGATC
AGCGCCGCCATGGTCAGGGATCCTACAACTCCAGATTATTCACAGAGGGC
TGGGCAGCGACGAGGAGGATGCTTCCGAGGAGGAGAAGGCAGAGAGGCTC
TTGTACACCTGGCCAGGCACACACCCCCTCTCTTCCCACCTCCATCTGCT
GCGCGTCGCTGAGAGCCTCATCGCCTTCACGCGATGCTTCTGTGCTTCCC
CCCCTACCTCCCCCACCACCTCCTCCTCCTCGGCATTGGAAAACGGAGTG
AAAAAAAAAGAAGAGGACGATGTGGAGATCGTCTCCCTAGGGAGCACCAC
CCTCTGCTTTCTCCGCCTCCCCTGCCCTTCCTTCTCCCCTCCATCCTCGT
CCTCTTCTCCTTCCTCCCTTTGGCCAATATGGGCCATCGTCCTCCTCGAT
AGCTCTTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCCCTCTTG
CGATCCGCGTGCTAGCCTCTCCCTCCTCGCGCAATCATGGGCTGCCTTCG
CCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACTGGGAAGAGGGAGGA
AGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGAGGAGGAGGAGTAGG
AGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGACCCAGTTCCTCCTGA
AGCGCCTCCGACTTCTACAAAGGTCCTCCTCCTCCTCCTCCCCCTCCCCT
TCCTCCTTCTCCTACCCCTCCCACAGCGAGGAGGAGACCGTGGAGCACGT
CAGAGAAAAATTGAATGTCCTCATGGCGGCCTCTCCCATCACAGCCTTAC
GAAGACGCCTCACGACCTTCCTCTCCTCCCTCGTCCTGCATCGCTTCCTG
CATGGAGGGAAAAGCATTCACCTCGCGGAGGCAAGCGCCGGGTTGCACAC
CCTCCCCCCCGACAGCTCCCTCCACACAACCCTTCACCAGATCGAGCACG
TCTTCCTCTCCAACCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGA
GGGAAGGAGGGAGGGAGGGCTGGAAGGGGGGTTAGCGTTATCTATGATGG
GCATGTGGTGTGGAAGCAGCAGCAACAACAGCAACAACAACAACAACAAC
CACAACAACAACAACAACAACAACAACAACAACAACAACGATAG
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protein sequence of NO23G01270.1

>NO23G01270.1-protein ID=NO23G01270.1-protein|Name=NO23G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MEPSAPLPPQPTSSSRSAPPWSGILQLQIIHRGLGSDEEDASEEEKAERL
LYTWPGTHPLSSHLHLLRVAESLIAFTRCFCASPPTSPTTSSSSALENGV
KKKEEDDVEIVSLGSTTLCFLRLPCPSFSPPSSSSSPSSLWPIWAIVLLD
SSSSSSSSSSSSSSPSCDPRASLSLLAQSWAAFAFFYPLEARCLYWEEGG
REGGKEGGERGGGGGVGGGGRAPAYVTETQFLLKRLRLLQRSSSSSSPSP
SSFSYPSHSEEETVEHVREKLNVLMAASPITALRRRLTTFLSSLVLHRFL
HGGKSIHLAEASAGLHTLPPDSSLHTTLHQIEHVFLSNLSLLEQEGGEQG
GKEGGRAGRGVSVIYDGHVVWKQQQQQQQQQQQPQQQQQQQQQQQQR*
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mRNA from alignment at chr23:452541..454762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01270.1 ID=NO23G01270.1|Name=NO23G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2222bp|location=Sequence derived from alignment at chr23:452541..454762- (Nannochloropsis oceanica)
ATGGAACCATCGGCACCATTACCTCCACAGCCCACCTCGTCCTCAAGATC
AGCGCCGCCATGGTCAGGGATCCTACAACTCCAGATTATTCACAGAGGGC
TGGGCAGCGACGAGGAGGATGCTTCCGAGGAGGAGAAGGCAGAGAGGCTC
TTGTACACCTGGCCAGGCACGTTTGGGCCGTTCCTCCTTCCCTTCCTCCT
TCCCTTCCTCCTTCCGCTCATTCCCTCTGTGCAGTGTGTGTGTATGTGGT
TGTGTGGATGTAGTGGTGTGTTGAAGAAGGGCTTGGTTTTAATTGGACGC
GGAAGAGGACGATGCATCGAAAGGAGGAAAGCGGCATACAGAGTGACCCA
CATTCACCCCCTCCGTCCCTCCCTCCATCCATTCCCCCCTCCCTCTAGGC
ACACACCCCCTCTCTTCCCACCTCCATCTGCTGCGCGTCGCTGAGAGCCT
CATCGCCTTCACGCGATGCTTCTGTGCTTCCCCCCCTACCTCCCCCACCA
CCTCCTCCTCCTCGGCATTGGAAAACGGAGTGAAAAAAAAAGAAGAGGAC
GATGTGGAGATCGTCTCCCTAGGGGTAAGCAGAAGAAATATAGGGGAGGG
AGGGACGGACAGAGGGAGGGAGGGAGGGAAGGAAATAGGGAAGGGGAGAG
CAAGCTCCACTGCGACACAAATCCCTCATCACACAAACAAATACCCTCCT
CTCCCCCTGTTTTTCTCTCTCTCTCTCCGTCCCGCTTCCCAGAGCACCAC
CCTCTGCTTTCTCCGCCTCCCCTGCCCTTCCTTCTCCCCTCCATCCTCGT
CCTCTTCTCCTTCCTCCCTTTGGCCAATATGGGCCATCGTCCTCCTCGAT
AGCTCTTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCCCTCTTG
CGATCCGCGTGCTAGCCTCTCCCTCCTCGCGCAATCATGGGCTGCCTTCG
CCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACTGGGAAGAGGGAGGA
AGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGAGGAGGAGGAGTAGG
AGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGGTGAGCCAAGGGGTGA
AGGAGGGAATCGTGTAAGGCGGGAGGTAGGTAGGAAGGGAGGAAGAGAGA
AAAAAGTGCACACAATCAGAGTAACCTTCATTTGAATATTTAATATTTAA
AATTTGAAAAACAGACCCAGTTCCTCCTGAAGCGCCTCCGACTTCTACAA
AGGTCCTCCTCCTCCTCCTCCCCCTCCCCTTCCTCCTTCTCCTACCCCTC
CCACAGCGAGGAGGAGACCGTGGAGCACGTCAGAGAAAAATTGAATGTCC
TCATGGCGGCCTCTCCCATCACAGCCTTACGAAGGTACGTGACCCGTCCT
CTCTATCTCCTTCCCTCCCTCCCTCTTTCCCTCTTATCCAGGTCGCTCAA
TGCCCCCTTGCCCCCCCCCTTTCCTCCCTCTCTCCCTACCTCTTCAGACG
CCTCACGACCTTCCTCTCCTCCCTCGTCCTGCATCGCTTCCTGCATGGAG
GGAAAAGCATTCACCTCGCGGAGGCAAGCGCCGGGTTGCACACCCTCCCC
CCCGTGAGCCCCCCTTCTTTTCCCCCCCATCCCTTCTCTTCTCTCATTTT
CTCCCCCTCCCTCTCTGTGTCTCATTCGTTAACATGTCCTTTCCTCCCTC
CCTTCCTCCCTCCCTCCCTCTCACCCTATATGCTTCTCATTCATATATCC
CTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTTAGGACAG
CTCCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTCCAACC
TTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGGGAGGG
AGGGCTGGAAGGGGGGTTAGCGTTATCTATGATGGGCATGTGGTGTGGAA
GGTGAGGAGGGGAGGGAGGGAGGGAAGGGAGGGAGGGAAAAATCACCATC
AGTTCTACCGCCACTTGAGCCTCTGTTTTTCACGGCCCTCTCTCCCTCCC
TCCCTCAGGACCAGCACCTCCCTCCCTCCCTCCTTCCCATCCTCTATGGC
GTTGTCCGTGCGCGCGACGAGTGCAACAACCACAACCACAACAGCAGCAG
CAACAACAGCAACAACAACAACAACAACCACAACAACAACAACAACAACA
ACAACAACAACAACAACGATAG
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Coding sequence (CDS) from alignment at chr23:452541..454762-

>NO23G01270.1 ID=NO23G01270.1|Name=NO23G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr23:452541..454762- (Nannochloropsis oceanica)
ATGGAACCATCGGCACCATTACCTCCACAGCCCACCTCGTCCTCAAGATC
AGCGCCGCCATGGTCAGGGATCCTACAACTCCAGATTATTCACAGAGGGC
TGGGCAGCGACGAGGAGGATGCTTCCGAGGAGGAGAAGGCAGAGAGGCTC
TTGTACACCTGGCCAGGCACACACCCCCTCTCTTCCCACCTCCATCTGCT
GCGCGTCGCTGAGAGCCTCATCGCCTTCACGCGATGCTTCTGTGCTTCCC
CCCCTACCTCCCCCACCACCTCCTCCTCCTCGGCATTGGAAAACGGAGTG
AAAAAAAAAGAAGAGGACGATGTGGAGATCGTCTCCCTAGGGAGCACCAC
CCTCTGCTTTCTCCGCCTCCCCTGCCCTTCCTTCTCCCCTCCATCCTCGT
CCTCTTCTCCTTCCTCCCTTTGGCCAATATGGGCCATCGTCCTCCTCGAT
AGCTCTTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCCCTCTTG
CGATCCGCGTGCTAGCCTCTCCCTCCTCGCGCAATCATGGGCTGCCTTCG
CCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACTGGGAAGAGGGAGGA
AGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGAGGAGGAGGAGTAGG
AGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGACCCAGTTCCTCCTGA
AGCGCCTCCGACTTCTACAAAGGTCCTCCTCCTCCTCCTCCCCCTCCCCT
TCCTCCTTCTCCTACCCCTCCCACAGCGAGGAGGAGACCGTGGAGCACGT
CAGAGAAAAATTGAATGTCCTCATGGCGGCCTCTCCCATCACAGCCTTAC
GAAGACGCCTCACGACCTTCCTCTCCTCCCTCGTCCTGCATCGCTTCCTG
CATGGAGGGAAAAGCATTCACCTCGCGGAGGCAAGCGCCGGGTTGCACAC
CCTCCCCCCCGACAGCTCCCTCCACACAACCCTTCACCAGATCGAGCACG
TCTTCCTCTCCAACCTTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGA
GGGAAGGAGGGAGGGAGGGCTGGAAGGGGGGTTAGCGTTATCTATGATGG
GCATGTGGTGTGGAAGCAGCAGCAACAACAGCAACAACAACAACAACAAC
CACAACAACAACAACAACAACAACAACAACAACAACAACGATAG
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Synonyms
Publications