NO23G01270, NO23G01270 (gene) Nannochloropsis oceanica

Overview
NameNO23G01270
Unique NameNO23G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2222
Alignment locationchr23:452541..454762 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:452541..454762 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01270.1NO23G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01270.1NO23G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01270 ID=NO23G01270|Name=NO23G01270|organism=Nannochloropsis oceanica|type=gene|length=2222bp
ATGGAACCATCGGCACCATTACCTCCACAGCCCACCTCGTCCTCAAGATC
AGCGCCGCCATGGTCAGGGATCCTACAACTCCAGATTATTCACAGAGGGC
TGGGCAGCGACGAGGAGGATGCTTCCGAGGAGGAGAAGGCAGAGAGGCTC
TTGTACACCTGGCCAGgcacgtttgggccgttcctccttcccttcctcct
tcccttcctccttccgctcattccctctgtgcagtgtgtgtgtatgtggt
tgtgtggatgtagtggtgtgttgaagaagggcttggttttaattggacgc
ggaagaggacgatgcatcgaaaggaggaaagcggcatacagagtgaccca
cattcaccccctccgtccctccctccatccattcccccctccctctagGC
ACACACCCCCTCTCTTCCCACCTCCATCTGCTGCGCGTCGCTGAGAGCCT
CATCGCCTTCACGCGATGCTTCTGTGCTTCCCCCCCTACCTCCCCCACCA
CCTCCTCCTCCTCGGCATTGGAAAACGGAGTGAAAAAAAAAGAAGAGGAC
GATGTGGAGATCGTCTCCCTAGGGgtaagcagaagaaatataggggaggg
agggacggacagagggagggagggagggaaggaaatagggaaggggagag
caagctccactgcgacacaaatccctcatcacacaaacaaataccctcct
ctccccctgtttttctctctctctctccgtcccgcttcccagAGCACCAC
CCTCTGCTTTCTCCGCCTCCCCTGCCCTTCCTTCTCCCCTCCATCCTCGT
CCTCTTCTCCTTCCTCCCTTTGGCCAATATGGGCCATCGTCCTCCTCGAT
AGCTCTTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCCCTCTTG
CGATCCGCGTGCTAGCCTCTCCCTCCTCGCGCAATCATGGGCTGCCTTCG
CCTTTTTCTACCCTTTGGAAGCCCGCTGTCTCTACTGGGAAGAGGGAGGA
AGGGAGGGAGGAAAGGAGGGAGGAGAAAGAGGAGGAGGAGGAGGAGTAGG
AGGGGGAGGAAGAGCACCAGCCTACGTGACCGAGgtgagccaaggggtga
aggagggaatcgtgtaaggcgggaggtaggtaggaagggaggaagagaga
aaaaagtgcacacaatcagagtaaccttcatttgaatatttaatatttaa
aatttgaaaaacagACCCAGTTCCTCCTGAAGCGCCTCCGACTTCTACAA
AGGTCCTCCTCCTCCTCCTCCCCCTCCCCTTCCTCCTTCTCCTACCCCTC
CCACAGCGAGGAGGAGACCGTGGAGCACGTCAGAGAAAAATTGAATGTCC
TCATGGCGGCCTCTCCCATCACAGCCTTACGAAGgtacgtgacccgtcct
ctctatctccttccctccctccctctttccctcttatccaggtcgctcaa
tgcccccttgccccccccctttcctccctctctccctacctcttcagACG
CCTCACGACCTTCCTCTCCTCCCTCGTCCTGCATCGCTTCCTGCATGGAG
GGAAAAGCATTCACCTCGCGGAGGCAAGCGCCGGGTTGCACACCCTCCCC
CCCgtgagccccccttcttttcccccccatcccttctcttctctcatttt
ctccccctccctctctgtgtctcattcgttaacatgtcctttcctccctc
ccttcctccctccctccctctcaccctatatgcttctcattcatatatcc
ctccctccctccctccctcccttccttcctccctccctcccttagGACAG
CTCCCTCCACACAACCCTTCACCAGATCGAGCACGTCTTCCTCTCCAACC
TTTCGCTCCTCGAGCAGGAGGGAGGGGAGCAGGGAGGGAAGGAGGGAGGG
AGGGCTGGAAGGGGGGTTAGCGTTATCTATGATGGGCATGTGGTGTGGAA
Ggtgaggaggggagggagggagggaagggagggagggaaaaatcaccatc
agttctaccgccacttgagcctctgtttttcacggccctctctccctccc
tccctcaggaccagcacctccctccctccctccttcccatcctctatggc
gttgtccgtgcgcgcgacgagtgcaacaaccacaaccacaacagCAGCAG
CAACAACAGCAACAACAACAACAACAACCACAACAACAACAACAACAACA
ACAACAACAACAACAACGATAG
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protein sequence of NO23G01270.1

>NO23G01270.1-protein ID=NO23G01270.1-protein|Name=NO23G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MEPSAPLPPQPTSSSRSAPPWSGILQLQIIHRGLGSDEEDASEEEKAERL
LYTWPGTHPLSSHLHLLRVAESLIAFTRCFCASPPTSPTTSSSSALENGV
KKKEEDDVEIVSLGSTTLCFLRLPCPSFSPPSSSSSPSSLWPIWAIVLLD
SSSSSSSSSSSSSSPSCDPRASLSLLAQSWAAFAFFYPLEARCLYWEEGG
REGGKEGGERGGGGGVGGGGRAPAYVTETQFLLKRLRLLQRSSSSSSPSP
SSFSYPSHSEEETVEHVREKLNVLMAASPITALRRRLTTFLSSLVLHRFL
HGGKSIHLAEASAGLHTLPPDSSLHTTLHQIEHVFLSNLSLLEQEGGEQG
GKEGGRAGRGVSVIYDGHVVWKQQQQQQQQQQQPQQQQQQQQQQQQR*
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Synonyms
Publications