NO23G01130.1, NO23G01130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G01130.1
Unique Name	NO23G01130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2535
Alignment location	chr23:412891..415425 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:412891..415425 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G01130.1 vs.
Match: EWM22929.1 (Integrase/recombinase, partial [Nannochloropsis gaditana])

HSP 1 Score: 80.5 bits (197), Expect = 2.800e-11
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 0

Query:  655 GGRRGVAKPGRLKQVACDGRSQGGGKEEGRGAGRGKEKRHMAPSSPFSSASSSHPSYPLLSPALWAEFQYFLSKERAIALSTSKSYCERLTRFLVDLQDGGSLKGTDAVVARSREEARRYVEDRWGKACAVAAEANRAKLCAWRHFLRFMGLTLGE-REEGEEGKEGEGEGEGESDWVSAEEEEEEDDEG 844
            G RR + + G        G   GGG   G G GR +++R +  S   S           ++  +W EFQ +++ E+A++ STS SY +R+ RFL+D+++G       A    +RE AR YVE +W  A AVA+ A R K+ AW HFL ++GL  G+ +E+G+ G+ G G  E E+D    E +   D EG
Sbjct:    1 GQRRALGRSG--------GDGGGGGGGGGGGGGRRRKRRRICHSLALSC----------MARPVWEEFQGWMAAEKALSPSTSHSYSKRVARFLIDMEEGRE----QAEKVMNREGARAYVERKWEVASAVASSALRVKMNAWNHFLNYLGLGGGDGKEDGKGGQAGVGRKE-EADGEDGESDGVGDGEG 167

The following BLAST results are available for this feature:

BLAST of NO23G01130.1 vs.

BLAST of NO23G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22929.1	2.800e-11	35.79	Integrase/recombinase, partial [Nannochloropsis ga...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01130	NO23G01130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01130.1	NO23G01130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01130.1.cds1	NO23G01130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:412891..415425+
coding sequence from alignment at chr23:412891..415425+

mRNA sequence

>NO23G01130.1 ID=NO23G01130.1|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp
ATGGACCGTTGCCAAGACTTCCTGAGAGGGAACTCCCTCCCTCCCCACCT
TGCCCTCCAGCTGAATCTCCTCCCTCCTTCCGCAGAGAAAGGCGCAAAAA
GACAAATAGACGGGAAGGAGGGAGGAAGGGAGGGAGGAAAGGAGGGCGGT
GAAGGGCAGAGAGAAGGTGGGAGTTTTGGAGGGGAGGGAGGGGAGGAGGG
AGGGGGAAAGGAAGGGAGGGAGAGGTTGTCTTTGTACGAGTCAGTGTACT
ACACTGCGGTTATTGATCGATTGCTGTGTGAAGCCGTGTACTTCGCTCTC
TTGCTACAGCAGCAGCAGCAGGAGCAGGAGCAGGAGGGATGCGTGGGACA
AGAGCAAGGCGGAGAAGAGAGAGCCCTGCCACAAGGGGGAGGAAGGGAAG
GAGGAAGGGAAAGGGGGAAGGAGGTTGTGGTGCGAAAGATGAAACAGAAG
AGCGATGTAAGGGTTTTGGCAGAGTGGGAGGGAGTGGAAGAGGCCGTGGG
GGAGGCAGGGGACGAGGAGACTCAAAATGGATGGGCGCTGCTGAAATGGT
GGCTGAAGGGAGGGAGGAAAGGAGGAAGGAAAAAAAGGAAGGTGGAGATG
AGTAGCTACAGTTACAGCGATAGCAGCAGTAGCAGCAGCAGTAGCAGTGA
ACTGTCCAGCGACGAGGATCGGAAACGGGAGGTGGAGGAAACGGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATGGTACCTCTCT
AGGGGATTGCAGGAGAGATTTAAGGGCTTTTTAAAGGAAAAGAACGAGTC
TATTGGGAGCAGTACATTGGAGGGGTACACGTCGGTGGTGGAGGAGGTGG
TGGAGCAGGTAGAGAGGGAGGAAGGGAGGGAGGGAGGGAAGAAGAGATTA
TTGAGGGAGGAAGAGGAGGCGCGGGAGTGGTTATGTGAGAATGCGGGCCG
AATCAGCGAGCAGGTGGAGGAGAGGATGACGCGCTCAGAGAAGGTAGCAT
GGACATTTTGGGTGCAGTTTTTGGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGATGAGGGAGAGGGATGGAGGGAAGGAAAGATGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGACAAGAGTATCGGGACGGCGGCTAGGATGGGGC
TGAGGGAGAGAGGGCGGGAAGGAGGGAGGAGGAGGGGAAGGGGAAAGGGA
CACTGCAGCTATAGTGTGATTGATTTGGGGCTCTCGCGGCGTTTCCTCGA
CTGGCTAGCTAGCGAGGTCCCTGTCCAGCAGCAGCAGCAGCAGCAGCACC
GCCACCACCACCACCACCAAAAAGCTCGAATTAAATCCCACAAGACCCGC
ACTCGGTATCTTCGCATGGCGCAAAAAACAGTCGCCGGCGTCCTCCTGCA
TCTTTGTAGGCCTTCCTCCCTCTCCTCTCCATCCTTCCCTTCCTCTCTCT
CCTCCCCAAGTGGTGGCGATGGTATCACCTGGGAGGGGAATGACAGCCAT
TACCTGAAGAAAATCCGCCCGTTGACTGCCCGAGATATCCGACCTTTTTA
CGAAGCAAATAAGACATTGTTTGCCCTGGTCTGGAAAGAGGAGGGGATCA
AGCTGAAGCGGTGTGCATGGGAGCATTTCGTGGAGTTTGCGGAGGAGGAG
GTAAGGATGGGAGGGAGAGGTGGCCGTGGAGGTGGGGAGGGAAGGTGGTT
TGAGGAGGAGGAGGAGGACGCAGGGGAGGAAGTTGAAGGAGAGGAGGAGG
AAGTGGTGGTGGTGGCGAAGAAGAAGAGGAAGAGAAGGACCAAGCAAGAG
ATGCTGATGTATAGAGAGGAGATGCGAAGGGATGAGGAGAACTCGAAGAA
CAAGAGGAAGAGGAGGAAGAGGAAGAAGAAGGTGAGAGAAGACGAGGGGG
AGGAAGACGAGGAGGACGCTCAATCTCTTCGCGCGAGCAGAGGCAGAGAA
AGGGGAAGACGAGGAGGAAGACGAGGAGTAGCGAAGCCCGGGCGTTTAAA
ACAAGTGGCGTGTGATGGTCGCAGTCAAGGAGGAGGCAAGGAAGAAGGAA
GAGGTGCTGGACGAGGAAAGGAGAAAAGACATATGGCACCGTCCTCTCCC
TTCTCCTCTGCCTCCTCTTCCCACCCCTCTTATCCTTTGCTCTCCCCGGC
CCTGTGGGCCGAGTTTCAATACTTTCTATCGAAGGAGAGGGCGATCGCTT
TGTCGACGAGCAAGAGCTATTGCGAACGCCTCACTCGTTTCCTGGTCGAC
CTCCAGGACGGGGGAAGTTTGAAGGGAACGGATGCGGTGGTTGCGAGGAG
CAGGGAGGAGGCACGTAGATATGTGGAGGATAGGTGGGGCAAGGCGTGTG
CGGTAGCAGCAGAGGCAAATAGGGCGAAATTGTGTGCATGGAGACACTTC
CTAAGGTTTATGGGACTGACTCTTGGAGAGAGGGAGGAGGGGGAGGAGGG
AAAGGAAGGGGAGGGGGAGGGGGAGGGGGAAAGTGATTGGGTGAGTGCGG
AGGAGGAGGAGGAGGAGGATGATGAAGGAGAGTAA

protein sequence of NO23G01130.1

>NO23G01130.1-protein ID=NO23G01130.1-protein|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=845bp
MDRCQDFLRGNSLPPHLALQLNLLPPSAEKGAKRQIDGKEGGREGGKEGG
EGQREGGSFGGEGGEEGGGKEGRERLSLYESVYYTAVIDRLLCEAVYFAL
LLQQQQQEQEQEGCVGQEQGGEERALPQGGGREGGRERGKEVVVRKMKQK
SDVRVLAEWEGVEEAVGEAGDEETQNGWALLKWWLKGGRKGGRKKRKVEM
SSYSYSDSSSSSSSSSELSSDEDRKREVEETEEEEEEEEEEEEEEGWYLS
RGLQERFKGFLKEKNESIGSSTLEGYTSVVEEVVEQVEREEGREGGKKRL
LREEEEAREWLCENAGRISEQVEERMTRSEKVAWTFWVQFLEEEEEEEEE
EEDEGEGWREGKMEEEEEEEEEDKSIGTAARMGLRERGREGGRRRGRGKG
HCSYSVIDLGLSRRFLDWLASEVPVQQQQQQQHRHHHHHQKARIKSHKTR
TRYLRMAQKTVAGVLLHLCRPSSLSSPSFPSSLSSPSGGDGITWEGNDSH
YLKKIRPLTARDIRPFYEANKTLFALVWKEEGIKLKRCAWEHFVEFAEEE
VRMGGRGGRGGGEGRWFEEEEEDAGEEVEGEEEEVVVVAKKKRKRRTKQE
MLMYREEMRRDEENSKNKRKRRKRKKKVREDEGEEDEEDAQSLRASRGRE
RGRRGGRRGVAKPGRLKQVACDGRSQGGGKEEGRGAGRGKEKRHMAPSSP
FSSASSSHPSYPLLSPALWAEFQYFLSKERAIALSTSKSYCERLTRFLVD
LQDGGSLKGTDAVVARSREEARRYVEDRWGKACAVAAEANRAKLCAWRHF
LRFMGLTLGEREEGEEGKEGEGEGEGESDWVSAEEEEEEDDEGE*

mRNA from alignment at chr23:412891..415425+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G01130.1 ID=NO23G01130.1|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp|location=Sequence derived from alignment at chr23:412891..415425+ (Nannochloropsis oceanica)
ATGGACCGTTGCCAAGACTTCCTGAGAGGGAACTCCCTCCCTCCCCACCT
TGCCCTCCAGCTGAATCTCCTCCCTCCTTCCGCAGAGAAAGGCGCAAAAA
GACAAATAGACGGGAAGGAGGGAGGAAGGGAGGGAGGAAAGGAGGGCGGT
GAAGGGCAGAGAGAAGGTGGGAGTTTTGGAGGGGAGGGAGGGGAGGAGGG
AGGGGGAAAGGAAGGGAGGGAGAGGTTGTCTTTGTACGAGTCAGTGTACT
ACACTGCGGTTATTGATCGATTGCTGTGTGAAGCCGTGTACTTCGCTCTC
TTGCTACAGCAGCAGCAGCAGGAGCAGGAGCAGGAGGGATGCGTGGGACA
AGAGCAAGGCGGAGAAGAGAGAGCCCTGCCACAAGGGGGAGGAAGGGAAG
GAGGAAGGGAAAGGGGGAAGGAGGTTGTGGTGCGAAAGATGAAACAGAAG
AGCGATGTAAGGGTTTTGGCAGAGTGGGAGGGAGTGGAAGAGGCCGTGGG
GGAGGCAGGGGACGAGGAGACTCAAAATGGATGGGCGCTGCTGAAATGGT
GGCTGAAGGGAGGGAGGAAAGGAGGAAGGAAAAAAAGGAAGGTGGAGATG
AGTAGCTACAGTTACAGCGATAGCAGCAGTAGCAGCAGCAGTAGCAGTGA
ACTGTCCAGCGACGAGGATCGGAAACGGGAGGTGGAGGAAACGGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATGGTACCTCTCT
AGGGGATTGCAGGAGAGATTTAAGGGCTTTTTAAAGGAAAAGAACGAGTC
TATTGGGAGCAGTACATTGGAGGGGTACACGTCGGTGGTGGAGGAGGTGG
TGGAGCAGGTAGAGAGGGAGGAAGGGAGGGAGGGAGGGAAGAAGAGATTA
TTGAGGGAGGAAGAGGAGGCGCGGGAGTGGTTATGTGAGAATGCGGGCCG
AATCAGCGAGCAGGTGGAGGAGAGGATGACGCGCTCAGAGAAGGTAGCAT
GGACATTTTGGGTGCAGTTTTTGGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGATGAGGGAGAGGGATGGAGGGAAGGAAAGATGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGACAAGAGTATCGGGACGGCGGCTAGGATGGGGC
TGAGGGAGAGAGGGCGGGAAGGAGGGAGGAGGAGGGGAAGGGGAAAGGGA
CACTGCAGCTATAGTGTGATTGATTTGGGGCTCTCGCGGCGTTTCCTCGA
CTGGCTAGCTAGCGAGGTCCCTGTCCAGCAGCAGCAGCAGCAGCAGCACC
GCCACCACCACCACCACCAAAAAGCTCGAATTAAATCCCACAAGACCCGC
ACTCGGTATCTTCGCATGGCGCAAAAAACAGTCGCCGGCGTCCTCCTGCA
TCTTTGTAGGCCTTCCTCCCTCTCCTCTCCATCCTTCCCTTCCTCTCTCT
CCTCCCCAAGTGGTGGCGATGGTATCACCTGGGAGGGGAATGACAGCCAT
TACCTGAAGAAAATCCGCCCGTTGACTGCCCGAGATATCCGACCTTTTTA
CGAAGCAAATAAGACATTGTTTGCCCTGGTCTGGAAAGAGGAGGGGATCA
AGCTGAAGCGGTGTGCATGGGAGCATTTCGTGGAGTTTGCGGAGGAGGAG
GTAAGGATGGGAGGGAGAGGTGGCCGTGGAGGTGGGGAGGGAAGGTGGTT
TGAGGAGGAGGAGGAGGACGCAGGGGAGGAAGTTGAAGGAGAGGAGGAGG
AAGTGGTGGTGGTGGCGAAGAAGAAGAGGAAGAGAAGGACCAAGCAAGAG
ATGCTGATGTATAGAGAGGAGATGCGAAGGGATGAGGAGAACTCGAAGAA
CAAGAGGAAGAGGAGGAAGAGGAAGAAGAAGGTGAGAGAAGACGAGGGGG
AGGAAGACGAGGAGGACGCTCAATCTCTTCGCGCGAGCAGAGGCAGAGAA
AGGGGAAGACGAGGAGGAAGACGAGGAGTAGCGAAGCCCGGGCGTTTAAA
ACAAGTGGCGTGTGATGGTCGCAGTCAAGGAGGAGGCAAGGAAGAAGGAA
GAGGTGCTGGACGAGGAAAGGAGAAAAGACATATGGCACCGTCCTCTCCC
TTCTCCTCTGCCTCCTCTTCCCACCCCTCTTATCCTTTGCTCTCCCCGGC
CCTGTGGGCCGAGTTTCAATACTTTCTATCGAAGGAGAGGGCGATCGCTT
TGTCGACGAGCAAGAGCTATTGCGAACGCCTCACTCGTTTCCTGGTCGAC
CTCCAGGACGGGGGAAGTTTGAAGGGAACGGATGCGGTGGTTGCGAGGAG
CAGGGAGGAGGCACGTAGATATGTGGAGGATAGGTGGGGCAAGGCGTGTG
CGGTAGCAGCAGAGGCAAATAGGGCGAAATTGTGTGCATGGAGACACTTC
CTAAGGTTTATGGGACTGACTCTTGGAGAGAGGGAGGAGGGGGAGGAGGG
AAAGGAAGGGGAGGGGGAGGGGGAGGGGGAAAGTGATTGGGTGAGTGCGG
AGGAGGAGGAGGAGGAGGATGATGAAGGAGAGTAA

Coding sequence (CDS) from alignment at chr23:412891..415425+

>NO23G01130.1 ID=NO23G01130.1|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=2535bp|location=Sequence derived from alignment at chr23:412891..415425+ (Nannochloropsis oceanica)
ATGGACCGTTGCCAAGACTTCCTGAGAGGGAACTCCCTCCCTCCCCACCT
TGCCCTCCAGCTGAATCTCCTCCCTCCTTCCGCAGAGAAAGGCGCAAAAA
GACAAATAGACGGGAAGGAGGGAGGAAGGGAGGGAGGAAAGGAGGGCGGT
GAAGGGCAGAGAGAAGGTGGGAGTTTTGGAGGGGAGGGAGGGGAGGAGGG
AGGGGGAAAGGAAGGGAGGGAGAGGTTGTCTTTGTACGAGTCAGTGTACT
ACACTGCGGTTATTGATCGATTGCTGTGTGAAGCCGTGTACTTCGCTCTC
TTGCTACAGCAGCAGCAGCAGGAGCAGGAGCAGGAGGGATGCGTGGGACA
AGAGCAAGGCGGAGAAGAGAGAGCCCTGCCACAAGGGGGAGGAAGGGAAG
GAGGAAGGGAAAGGGGGAAGGAGGTTGTGGTGCGAAAGATGAAACAGAAG
AGCGATGTAAGGGTTTTGGCAGAGTGGGAGGGAGTGGAAGAGGCCGTGGG
GGAGGCAGGGGACGAGGAGACTCAAAATGGATGGGCGCTGCTGAAATGGT
GGCTGAAGGGAGGGAGGAAAGGAGGAAGGAAAAAAAGGAAGGTGGAGATG
AGTAGCTACAGTTACAGCGATAGCAGCAGTAGCAGCAGCAGTAGCAGTGA
ACTGTCCAGCGACGAGGATCGGAAACGGGAGGTGGAGGAAACGGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATGGTACCTCTCT
AGGGGATTGCAGGAGAGATTTAAGGGCTTTTTAAAGGAAAAGAACGAGTC
TATTGGGAGCAGTACATTGGAGGGGTACACGTCGGTGGTGGAGGAGGTGG
TGGAGCAGGTAGAGAGGGAGGAAGGGAGGGAGGGAGGGAAGAAGAGATTA
TTGAGGGAGGAAGAGGAGGCGCGGGAGTGGTTATGTGAGAATGCGGGCCG
AATCAGCGAGCAGGTGGAGGAGAGGATGACGCGCTCAGAGAAGGTAGCAT
GGACATTTTGGGTGCAGTTTTTGGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGATGAGGGAGAGGGATGGAGGGAAGGAAAGATGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGACAAGAGTATCGGGACGGCGGCTAGGATGGGGC
TGAGGGAGAGAGGGCGGGAAGGAGGGAGGAGGAGGGGAAGGGGAAAGGGA
CACTGCAGCTATAGTGTGATTGATTTGGGGCTCTCGCGGCGTTTCCTCGA
CTGGCTAGCTAGCGAGGTCCCTGTCCAGCAGCAGCAGCAGCAGCAGCACC
GCCACCACCACCACCACCAAAAAGCTCGAATTAAATCCCACAAGACCCGC
ACTCGGTATCTTCGCATGGCGCAAAAAACAGTCGCCGGCGTCCTCCTGCA
TCTTTGTAGGCCTTCCTCCCTCTCCTCTCCATCCTTCCCTTCCTCTCTCT
CCTCCCCAAGTGGTGGCGATGGTATCACCTGGGAGGGGAATGACAGCCAT
TACCTGAAGAAAATCCGCCCGTTGACTGCCCGAGATATCCGACCTTTTTA
CGAAGCAAATAAGACATTGTTTGCCCTGGTCTGGAAAGAGGAGGGGATCA
AGCTGAAGCGGTGTGCATGGGAGCATTTCGTGGAGTTTGCGGAGGAGGAG
GTAAGGATGGGAGGGAGAGGTGGCCGTGGAGGTGGGGAGGGAAGGTGGTT
TGAGGAGGAGGAGGAGGACGCAGGGGAGGAAGTTGAAGGAGAGGAGGAGG
AAGTGGTGGTGGTGGCGAAGAAGAAGAGGAAGAGAAGGACCAAGCAAGAG
ATGCTGATGTATAGAGAGGAGATGCGAAGGGATGAGGAGAACTCGAAGAA
CAAGAGGAAGAGGAGGAAGAGGAAGAAGAAGGTGAGAGAAGACGAGGGGG
AGGAAGACGAGGAGGACGCTCAATCTCTTCGCGCGAGCAGAGGCAGAGAA
AGGGGAAGACGAGGAGGAAGACGAGGAGTAGCGAAGCCCGGGCGTTTAAA
ACAAGTGGCGTGTGATGGTCGCAGTCAAGGAGGAGGCAAGGAAGAAGGAA
GAGGTGCTGGACGAGGAAAGGAGAAAAGACATATGGCACCGTCCTCTCCC
TTCTCCTCTGCCTCCTCTTCCCACCCCTCTTATCCTTTGCTCTCCCCGGC
CCTGTGGGCCGAGTTTCAATACTTTCTATCGAAGGAGAGGGCGATCGCTT
TGTCGACGAGCAAGAGCTATTGCGAACGCCTCACTCGTTTCCTGGTCGAC
CTCCAGGACGGGGGAAGTTTGAAGGGAACGGATGCGGTGGTTGCGAGGAG
CAGGGAGGAGGCACGTAGATATGTGGAGGATAGGTGGGGCAAGGCGTGTG
CGGTAGCAGCAGAGGCAAATAGGGCGAAATTGTGTGCATGGAGACACTTC
CTAAGGTTTATGGGACTGACTCTTGGAGAGAGGGAGGAGGGGGAGGAGGG
AAAGGAAGGGGAGGGGGAGGGGGAGGGGGAAAGTGATTGGGTGAGTGCGG
AGGAGGAGGAGGAGGAGGATGATGAAGGAGAGTAA

Synonyms

Publications