Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr23 genome chr23:412891..415425 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01130.1 vs.
Match: EWM22929.1 (Integrase/recombinase, partial [Nannochloropsis gaditana])
HSP 1 Score: 80.5 bits (197), Expect = 2.800e-11
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 0
Query: 655 GGRRGVAKPGRLKQVACDGRSQGGGKEEGRGAGRGKEKRHMAPSSPFSSASSSHPSYPLLSPALWAEFQYFLSKERAIALSTSKSYCERLTRFLVDLQDGGSLKGTDAVVARSREEARRYVEDRWGKACAVAAEANRAKLCAWRHFLRFMGLTLGE-REEGEEGKEGEGEGEGESDWVSAEEEEEEDDEG 844
G RR + + G G GGG G G GR +++R + S S ++ +W EFQ +++ E+A++ STS SY +R+ RFL+D+++G A +RE AR YVE +W A AVA+ A R K+ AW HFL ++GL G+ +E+G+ G+ G G E E+D E + D EG
Sbjct: 1 GQRRALGRSG--------GDGGGGGGGGGGGGGRRRKRRRICHSLALSC----------MARPVWEEFQGWMAAEKALSPSTSHSYSKRVARFLIDMEEGRE----QAEKVMNREGARAYVERKWEVASAVASSALRVKMNAWNHFLNYLGLGGGDGKEDGKGGQAGVGRKE-EADGEDGESDGVGDGEG 167
The following BLAST results are available for this feature:
BLAST of NO23G01130.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 2.80e-11 / Id = 35.79 Sequence EWM22929.1
Match Name E-value Identity Description
EWM22929.1 2.800e-11 35.79 Integrase/recombinase, partial [Nannochloropsis ga... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO23G01130.1 ID=NO23G01130.1|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp back to top protein sequence of NO23G01130.1
>NO23G01130.1-protein ID=NO23G01130.1-protein|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=845bp back to top mRNA from alignment at chr23:412891..415425+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01130.1 ID=NO23G01130.1|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp|location=Sequence derived from alignment at chr23:412891..415425+ (Nannochloropsis oceanica)ATGGACCGTTGCCAAGACTTCCTGAGAGGGAACTCCCTCCCTCCCCACCT
TGCCCTCCAGCTGAATCTCCTCCCTCCTTCCGCAGAGAAAGGCGCAAAAA
GACAAATAGACGGGAAGGAGGGAGGAAGGGAGGGAGGAAAGGAGGGCGGT
GAAGGGCAGAGAGAAGGTGGGAGTTTTGGAGGGGAGGGAGGGGAGGAGGG
AGGGGGAAAGGAAGGGAGGGAGAGGTTGTCTTTGTACGAGTCAGTGTACT
ACACTGCGGTTATTGATCGATTGCTGTGTGAAGCCGTGTACTTCGCTCTC
TTGCTACAGCAGCAGCAGCAGGAGCAGGAGCAGGAGGGATGCGTGGGACA
AGAGCAAGGCGGAGAAGAGAGAGCCCTGCCACAAGGGGGAGGAAGGGAAG
GAGGAAGGGAAAGGGGGAAGGAGGTTGTGGTGCGAAAGATGAAACAGAAG
AGCGATGTAAGGGTTTTGGCAGAGTGGGAGGGAGTGGAAGAGGCCGTGGG
GGAGGCAGGGGACGAGGAGACTCAAAATGGATGGGCGCTGCTGAAATGGT
GGCTGAAGGGAGGGAGGAAAGGAGGAAGGAAAAAAAGGAAGGTGGAGATG
AGTAGCTACAGTTACAGCGATAGCAGCAGTAGCAGCAGCAGTAGCAGTGA
ACTGTCCAGCGACGAGGATCGGAAACGGGAGGTGGAGGAAACGGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATGGTACCTCTCT
AGGGGATTGCAGGAGAGATTTAAGGGCTTTTTAAAGGAAAAGAACGAGTC
TATTGGGAGCAGTACATTGGAGGGGTACACGTCGGTGGTGGAGGAGGTGG
TGGAGCAGGTAGAGAGGGAGGAAGGGAGGGAGGGAGGGAAGAAGAGATTA
TTGAGGGAGGAAGAGGAGGCGCGGGAGTGGTTATGTGAGAATGCGGGCCG
AATCAGCGAGCAGGTGGAGGAGAGGATGACGCGCTCAGAGAAGGTAGCAT
GGACATTTTGGGTGCAGTTTTTGGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGATGAGGGAGAGGGATGGAGGGAAGGAAAGATGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGACAAGAGTATCGGGACGGCGGCTAGGATGGGGC
TGAGGGAGAGAGGGCGGGAAGGAGGGAGGAGGAGGGGAAGGGGAAAGGGA
CACTGCAGCTATAGTGTGATTGATTTGGGGCTCTCGCGGCGTTTCCTCGA
CTGGCTAGCTAGCGAGGTCCCTGTCCAGCAGCAGCAGCAGCAGCAGCACC
GCCACCACCACCACCACCAAAAAGCTCGAATTAAATCCCACAAGACCCGC
ACTCGGTATCTTCGCATGGCGCAAAAAACAGTCGCCGGCGTCCTCCTGCA
TCTTTGTAGGCCTTCCTCCCTCTCCTCTCCATCCTTCCCTTCCTCTCTCT
CCTCCCCAAGTGGTGGCGATGGTATCACCTGGGAGGGGAATGACAGCCAT
TACCTGAAGAAAATCCGCCCGTTGACTGCCCGAGATATCCGACCTTTTTA
CGAAGCAAATAAGACATTGTTTGCCCTGGTCTGGAAAGAGGAGGGGATCA
AGCTGAAGCGGTGTGCATGGGAGCATTTCGTGGAGTTTGCGGAGGAGGAG
GTAAGGATGGGAGGGAGAGGTGGCCGTGGAGGTGGGGAGGGAAGGTGGTT
TGAGGAGGAGGAGGAGGACGCAGGGGAGGAAGTTGAAGGAGAGGAGGAGG
AAGTGGTGGTGGTGGCGAAGAAGAAGAGGAAGAGAAGGACCAAGCAAGAG
ATGCTGATGTATAGAGAGGAGATGCGAAGGGATGAGGAGAACTCGAAGAA
CAAGAGGAAGAGGAGGAAGAGGAAGAAGAAGGTGAGAGAAGACGAGGGGG
AGGAAGACGAGGAGGACGCTCAATCTCTTCGCGCGAGCAGAGGCAGAGAA
AGGGGAAGACGAGGAGGAAGACGAGGAGTAGCGAAGCCCGGGCGTTTAAA
ACAAGTGGCGTGTGATGGTCGCAGTCAAGGAGGAGGCAAGGAAGAAGGAA
GAGGTGCTGGACGAGGAAAGGAGAAAAGACATATGGCACCGTCCTCTCCC
TTCTCCTCTGCCTCCTCTTCCCACCCCTCTTATCCTTTGCTCTCCCCGGC
CCTGTGGGCCGAGTTTCAATACTTTCTATCGAAGGAGAGGGCGATCGCTT
TGTCGACGAGCAAGAGCTATTGCGAACGCCTCACTCGTTTCCTGGTCGAC
CTCCAGGACGGGGGAAGTTTGAAGGGAACGGATGCGGTGGTTGCGAGGAG
CAGGGAGGAGGCACGTAGATATGTGGAGGATAGGTGGGGCAAGGCGTGTG
CGGTAGCAGCAGAGGCAAATAGGGCGAAATTGTGTGCATGGAGACACTTC
CTAAGGTTTATGGGACTGACTCTTGGAGAGAGGGAGGAGGGGGAGGAGGG
AAAGGAAGGGGAGGGGGAGGGGGAGGGGGAAAGTGATTGGGTGAGTGCGG
AGGAGGAGGAGGAGGAGGATGATGAAGGAGAGTAA back to top Coding sequence (CDS) from alignment at chr23:412891..415425+
>NO23G01130.1 ID=NO23G01130.1|Name=NO23G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=2535bp|location=Sequence derived from alignment at chr23:412891..415425+ (Nannochloropsis oceanica) back to top