NO23G00770.1, NO23G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00770.1
Unique NameNO23G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr23:292958..294772 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:292958..294772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00770.1 vs.
Match: EWM22954.1 (eukaryotic initiation factor 4a [Nannochloropsis gaditana])

HSP 1 Score: 753.4 bits (1944), Expect = 3.600e-214
Identity = 381/413 (92.25%), Postives = 399/413 (96.61%), Query Frame = 0 
Query:    1 MAADPKAAATASGPADGPGLNSSQPTDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFME-LDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            MAADPKAA +ASG ADGPGLNS QP+  +IDTNWDECVE+FDSMDLR+DLLRGIYA+GFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELA QI KVL+SLGDF+E L VHACVGGTAVR+DI+KLR+GVHVVVGTPGRVYDMINRRALK+SYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFY+AVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTE M KRDFTVSAMHGDMDQRERD+IMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINF+T GD++Y+KDIE FYNTQIEEMP DVADLI
Sbjct:    1 MAADPKAAVSASGSADGPGLNSQQPSSADIDTNWDECVETFDSMDLREDLLRGIYAFGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELALQIRKVLVSLGDFVETLQVHACVGGTAVREDIAKLRNGVHVVVGTPGRVYDMINRRALKMSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYVAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEQMTKRDFTVSAMHGDMDQRERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQGDLQYMKDIEVFYNTQIEEMPSDVADLI 413
The following BLAST results are available for this feature:
BLAST of NO23G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22954.13.600e-21492.25eukaryotic initiation factor 4a [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00770NO23G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00770.1NO23G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00770.1.cds1NO23G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00770.1.cds2NO23G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00770.1.cds3NO23G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00770.1 ID=NO23G00770.1|Name=NO23G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGGCTGCCGATCCGAAAGCCGCTGCCACAGCTTCTGGCCCGGCGGACGG
TCCGGGCCTTAACTCGTCGCAGCCCACAGATACGGAGATCGACACGAACT
GGGACGAATGCGTCGAGTCTTTCGACTCCATGGACCTGCGAGATGACCTT
CTCCGCGGCATCTACGCGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCA
GCGGGCTGTCAAACCTGTCCTCATGGGTCGGGACGTAATAGCACAAGCCC
AGTCAGGGACGGGCAAGACTGCCACGTTCGCGATCAGTATCCTGCAGTCC
ATTGACACGTCCATCCGTGAGTGCCAGGCTTTGGTTCTGGCACCCACACG
AGAGCTGGCGCAGCAGATCATGAAGGTGCTCATCTCGCTGGGCGATTTCA
TGGAGTTGGACGTGCATGCGTGCGTAGGCGGCACGGCTGTGCGTGACGAC
ATCTCCAAGCTGCGCAGCGGGGTGCACGTGGTGGTGGGCACGCCGGGCCG
CGTCTACGACATGATTAATCGTCGCGCGCTCAAGCTGTCGTACGTAAAGC
TCTTCGTGTTGGACGAGGCGGACGAGATGCTGAGCCGCGGCTTCAAGGAG
CAGATCTATGATGTGTTCAAGTTCCTCCCTGAGAAGGTGCAGTGCGCACT
TTTCAGCGCTACCATGCCCCTGGAGGTGCTAGAGGTGACCAATAAGTTCA
TGCGCGAGCCTGTACGCATCCTGGTGAAGCGTGACGAGCTGACACTGGAG
GGCATCAAGCAGTTCTACATCGCCGTGGAGCGCGAGGACTGGAAGCTGGA
CACGCTCTGCGACCTGTACGAGACGCTCACCATCACCCAGGCCATCATCT
ACTGCAACACTCGGAGAAAGGTGGACTGGCTGACGGAGGCGATGCAAAAG
CGCGACTTCACGGTGTCGGCCATGCACGGCGACATGGACCAGCGGGAACG
CGACATCATCATGAAGGAATTCCGATCCGGCTCGTCCCGCGTGCTAATCA
CCACCGATCTGCTGGCCCGCGGCATCGACGTTCAGCAAGTGTCACTTGTC
ATCAACTACGATTTGCCCACCAACCGCGAGAACTATATTCATCGTATCGG
CCGCTCAGGCCGCTTCGGCCGCAAGGGCGTGGCCATAAACTTCCTGACTT
CGGGCGACGTTCGCTACCTCAAGGACATCGAGCAGTTCTACAACACACAA
ATCGAGGAGATGCCTGTCGATGTCGCCGACCTCATCTGA
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protein sequence of NO23G00770.1

>NO23G00770.1-protein ID=NO23G00770.1-protein|Name=NO23G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MAADPKAAATASGPADGPGLNSSQPTDTEIDTNWDECVESFDSMDLRDDL
LRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQS
IDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDD
ISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKE
QIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLE
GIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQK
RDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLV
INYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQ
IEEMPVDVADLI*
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mRNA from alignment at chr23:292958..294772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00770.1 ID=NO23G00770.1|Name=NO23G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp|location=Sequence derived from alignment at chr23:292958..294772+ (Nannochloropsis oceanica)
ATGGCTGCCGATCCGAAAGCCGCTGCCACAGCTTCTGGCCCGGCGGACGG
TCCGGGCCTTAACTCGTCGCAGCCCACAGATACGGAGATCGACACGAACT
GGGACGAATGCGTCGAGTCTTTCGACTCCATGGACCTGCGAGATGACCTT
CTCCGCGGCATCTACGCGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCA
GCGGGCTGTCAAACCTGTCCTCATGGGTCGGGACGTAATAGCACAAGCCC
AGTCAGGTGAGAAATGGGTGGGTTTGTTTGTCGAAGAGGCGGTGGATTGT
AAAGGGAGGGAGAAAGCGGAATTTGAGGGAGAGGAGGCCAAACCTGAGCC
TTATTTTGAAGGAAGACCGTGGGAAATGTCACGGGAGATATAATGGGCTT
TTAAGACTCCTGATTGAATGTAGACTAAGCGTGGGGGTGATGATTTTGAA
ATGTAAAACACCATCTTTCGAGTCCAAGCGTCCATGCGGCGCGCTGACGA
CACGAACCATTCATCTCTGACAACCTGACCCACAAATACACACATAGCTG
CAGATTAATCGTGTGTCTTTAATTGTTTTCGCATCCAAATTCCGTACCCT
CACACTCGCTTCTCCGACCCCCTCCTCTTCCTCCCCATGTGCCTGCAGGG
ACGGGCAAGACTGCCACGTTCGCGATCAGTATCCTGCAGTCCATTGACAC
GTCCATCCGTGAGTGCCAGGCTTTGGTTCTGGCACCCACACGAGAGCTGG
CGCAGCAGATCATGAAGGTGCTCATCTCGCTGGGCGATTTCATGGAGTTG
GACGTGCATGCGTGCGTAGGCGGCACGGCTGTGCGTGACGACATCTCCAA
GCTGCGCAGCGGGGTGCACGTGGTGGTGGGCACGCCGGGCCGCGTCTACG
ACATGATTAATCGTCGCGCGCTCAAGCTGTCGTACGTAAAGCTCTTCGTG
TTGGACGAGGCGGACGAGATGCTGAGCCGCGGCTTCAAGGAGCAGATCTA
TGATGTGTTCAAGTTCCTCCCTGAGAAGGTGCAGTGCGCACTTTTCAGCG
CTACCATGCCCCTGGAGGTGCTAGAGGTGACCAATAAGTTCATGCGCGAG
CCTGTACGCATCCTGGTGAAGCGTGACGAGCTGACACTGGAGGGCATCAA
GCAGTTCTACATCGCCGTGGAGCGCGAGGACTGGAAGCTGGACACGCTCT
GCGACCTGTACGAGACGCTCACCATCACCCAGGCCATCATCTACTGCAAC
ACTCGGAGAAAGGTAGGAATCTAAAGGAGCGGCGAGAGGGGAAAGGAAGG
AAGGAACGTGGGGAAGTGGGACATGCACGACACGGCGAGACCGACGAGAA
CACCATGTCCGAAGGAATCTAGGAATCCGTTTCTTTTCTGTAGTCGTTTC
CCCACACCTCTCCCTCCATTTTCTTTTCCTCCTTCCACCTCCGCAGGTGG
ACTGGCTGACGGAGGCGATGCAAAAGCGCGACTTCACGGTGTCGGCCATG
CACGGCGACATGGACCAGCGGGAACGCGACATCATCATGAAGGAATTCCG
ATCCGGCTCGTCCCGCGTGCTAATCACCACCGATCTGCTGGCCCGCGGCA
TCGACGTTCAGCAAGTGTCACTTGTCATCAACTACGATTTGCCCACCAAC
CGCGAGAACTATATTCATCGTATCGGCCGCTCAGGCCGCTTCGGCCGCAA
GGGCGTGGCCATAAACTTCCTGACTTCGGGCGACGTTCGCTACCTCAAGG
ACATCGAGCAGTTCTACAACACACAAATCGAGGAGATGCCTGTCGATGTC
GCCGACCTCATCTGA
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Coding sequence (CDS) from alignment at chr23:292958..294772+

>NO23G00770.1 ID=NO23G00770.1|Name=NO23G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr23:292958..294772+ (Nannochloropsis oceanica)
ATGGCTGCCGATCCGAAAGCCGCTGCCACAGCTTCTGGCCCGGCGGACGG
TCCGGGCCTTAACTCGTCGCAGCCCACAGATACGGAGATCGACACGAACT
GGGACGAATGCGTCGAGTCTTTCGACTCCATGGACCTGCGAGATGACCTT
CTCCGCGGCATCTACGCGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCA
GCGGGCTGTCAAACCTGTCCTCATGGGTCGGGACGTAATAGCACAAGCCC
AGTCAGGGACGGGCAAGACTGCCACGTTCGCGATCAGTATCCTGCAGTCC
ATTGACACGTCCATCCGTGAGTGCCAGGCTTTGGTTCTGGCACCCACACG
AGAGCTGGCGCAGCAGATCATGAAGGTGCTCATCTCGCTGGGCGATTTCA
TGGAGTTGGACGTGCATGCGTGCGTAGGCGGCACGGCTGTGCGTGACGAC
ATCTCCAAGCTGCGCAGCGGGGTGCACGTGGTGGTGGGCACGCCGGGCCG
CGTCTACGACATGATTAATCGTCGCGCGCTCAAGCTGTCGTACGTAAAGC
TCTTCGTGTTGGACGAGGCGGACGAGATGCTGAGCCGCGGCTTCAAGGAG
CAGATCTATGATGTGTTCAAGTTCCTCCCTGAGAAGGTGCAGTGCGCACT
TTTCAGCGCTACCATGCCCCTGGAGGTGCTAGAGGTGACCAATAAGTTCA
TGCGCGAGCCTGTACGCATCCTGGTGAAGCGTGACGAGCTGACACTGGAG
GGCATCAAGCAGTTCTACATCGCCGTGGAGCGCGAGGACTGGAAGCTGGA
CACGCTCTGCGACCTGTACGAGACGCTCACCATCACCCAGGCCATCATCT
ACTGCAACACTCGGAGAAAGGTGGACTGGCTGACGGAGGCGATGCAAAAG
CGCGACTTCACGGTGTCGGCCATGCACGGCGACATGGACCAGCGGGAACG
CGACATCATCATGAAGGAATTCCGATCCGGCTCGTCCCGCGTGCTAATCA
CCACCGATCTGCTGGCCCGCGGCATCGACGTTCAGCAAGTGTCACTTGTC
ATCAACTACGATTTGCCCACCAACCGCGAGAACTATATTCATCGTATCGG
CCGCTCAGGCCGCTTCGGCCGCAAGGGCGTGGCCATAAACTTCCTGACTT
CGGGCGACGTTCGCTACCTCAAGGACATCGAGCAGTTCTACAACACACAA
ATCGAGGAGATGCCTGTCGATGTCGCCGACCTCATCTGA
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Synonyms
Publications