NO23G00770, NO23G00770 (gene) Nannochloropsis oceanica

Overview
NameNO23G00770
Unique NameNO23G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr23:292958..294772 +

Link to JBrowse

Properties
Property NameValue
DescriptionATP-dependent RNA helicase eIF4A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:292958..294772 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: EWM22954.1 (eukaryotic initiation factor 4a [Nannochloropsis gaditana])

HSP 1 Score: 753.4 bits (1944), Expect = 3.600e-214
Identity = 381/413 (92.25%), Postives = 399/413 (96.61%), Query Frame = 0 
Query:    1 MAADPKAAATASGPADGPGLNSSQPTDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFME-LDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            MAADPKAA +ASG ADGPGLNS QP+  +IDTNWDECVE+FDSMDLR+DLLRGIYA+GFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELA QI KVL+SLGDF+E L VHACVGGTAVR+DI+KLR+GVHVVVGTPGRVYDMINRRALK+SYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFY+AVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTE M KRDFTVSAMHGDMDQRERD+IMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINF+T GD++Y+KDIE FYNTQIEEMP DVADLI
Sbjct:    1 MAADPKAAVSASGSADGPGLNSQQPSSADIDTNWDECVETFDSMDLREDLLRGIYAFGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELALQIRKVLVSLGDFVETLQVHACVGGTAVREDIAKLRNGVHVVVGTPGRVYDMINRRALKMSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYVAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEQMTKRDFTVSAMHGDMDQRERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQGDLQYMKDIEVFYNTQIEEMPSDVADLI 413
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: OQR92916.1 (ATP-dependent RNA helicase eIF4A [Achlya hypogyna])

HSP 1 Score: 665.2 bits (1715), Expect = 1.300e-187
Identity = 331/405 (81.73%), Postives = 368/405 (90.86%), Query Frame = 0 
Query:   11 ASGPADGPGLNSSQP---TDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            +  P    G  S  P    D +IDTNW+E +ESFD M+LR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFAISILQ ID+++RE QAL+LAPTRELAQQI+KV++++GD+M + VHACVGGTAVRDDI  L+SGVH+VVGTPGRV DMINRRA +   VKLFVLDEADEMLSRGFK+QIYDVF+FLPEKVQ ALFSATMPL+VLEVT +FMR+P+RILVKRDELTLEGIKQFYIA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTS D RYL+DIEQFYNTQI+EMP+DVADLI
Sbjct:    2 SDAPRSPRGEESHAPAPIVDGDIDTNWEEVIESFDGMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAISILQQIDSALRETQALILAPTRELAQQIVKVILAIGDYMGVSVHACVGGTAVRDDIRTLQSGVHIVVGTPGRVGDMINRRAFRTDAVKLFVLDEADEMLSRGFKDQIYDVFRFLPEKVQVALFSATMPLDVLEVTQRFMRDPIRILVKRDELTLEGIKQFYIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSADARYLRDIEQFYNTQIDEMPMDVADLI 406
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: XP_008605124.1 (ATP-dependent RNA helicase eIF4A [Saprolegnia diclina VS20] >XP_012194524.1 ATP-dependent RNA helicase eIF4A [Saprolegnia parasitica CBS 223.65] >EQC41410.1 ATP-dependent RNA helicase eIF4A [Saprolegnia diclina VS20] >KDO34862.1 ATP-dependent RNA helicase eIF4A [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 663.7 bits (1711), Expect = 3.800e-187
Identity = 331/402 (82.34%), Postives = 367/402 (91.29%), Query Frame = 0 
Query:   14 PADGPGLNSSQP---TDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            P    G +S  P    D +IDTNW+E +ESFD M+LR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFAISILQ ID+++RE QAL+LAPTRELAQQI+KV++++GD+M   VHACVGGTAVRDDI  L+SGVH+VVGTPGRV DMINRRA +   VKLFVLDEADEMLSRGFK+QIYDVF+FLPEKVQ ALFSATMPL+VLEVT +FMR+P+RILVKRDELTLEGIKQFYIA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTS D RYL+DIEQFYNTQI+EMP+DVADLI
Sbjct:    5 PRSPRGEDSHAPAPIVDGDIDTNWEEVIESFDGMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAISILQQIDSALRETQALILAPTRELAQQIVKVILAIGDYMGCLVHACVGGTAVRDDIRTLQSGVHIVVGTPGRVGDMINRRAFRTDSVKLFVLDEADEMLSRGFKDQIYDVFRFLPEKVQVALFSATMPLDVLEVTQRFMRDPIRILVKRDELTLEGIKQFYIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSADARYLRDIEQFYNTQIDEMPMDVADLI 406
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: GAX93656.1 (ATP-dependent RNA helicase eIF4A [Pythium insidiosum])

HSP 1 Score: 662.9 bits (1709), Expect = 6.400e-187
Identity = 325/386 (84.20%), Postives = 361/386 (93.52%), Query Frame = 0 
Query:   27 DTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            D +I+TNWDE +ESFD MDLR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G DVIAQAQSGTGKTATF +SILQ ID S++E QAL+LAPTRELAQQI+KV++++GD+M + VHACVGGTAVRDDI  L+ GVHVVVGTPGRV DMINRRAL+   VKLFVLDEADEMLSRGFK+QIY+VF+FLPEKVQ ALFSATMPL+VLEVT +FMR+P+RILVKRDELTLEGIKQF+IA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHG M+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLT  DVRYL+DIEQFYNTQIEEMP++VADLI
Sbjct:   25 DGDIETNWDEVIESFDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDVIAQAQSGTGKTATFTVSILQKIDVSLKETQALILAPTRELAQQIVKVIVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHVVVGTPGRVGDMINRRALRTDEVKLFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLEVTRRFMRDPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQAKDFTVSAMHGXMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRDIEQFYNTQIEEMPMNVADLI 410
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: CBJ30606.1 (eukaryotic initiation factor 4A [Ectocarpus siliculosus])

HSP 1 Score: 661.4 bits (1705), Expect = 1.900e-186
Identity = 322/387 (83.20%), Postives = 365/387 (94.32%), Query Frame = 0 
Query:   26 TDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            TD +I+TNWDEC+E+FD+M+LR++LLRGIYAYGFEKPSAIQQRAVKP+LMG+D IAQAQSGTGKTATFA+SILQ ID +  +CQALVLAPTRELAQQI+KV+ +LGDFM+L VHACVGGTAVRDDI  L++GVH+VVGTPGRVYDMI+R AL+L  V LFVLDEADEMLSRGFK+QIYDVF++LPE+VQ ALFSATMPL+VLEVTN+FM EPVRILVK+DELTLEGIKQFYIAV+RE+WKLDTLCDLYETLTITQAIIYCNTRR+VDWL+E MQ+RDFT+S MHGDM Q ERD+IM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINF+T GDVRYL+DIE+FY TQ+EEMP++VADLI
Sbjct:   18 TDDDIETNWDECIETFDAMELREELLRGIYAYGFEKPSAIQQRAVKPILMGKDCIAQAQSGTGKTATFAVSILQKIDVAAADCQALVLAPTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDIRTLQNGVHIVVGTPGRVYDMISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERVQVALFSATMPLDVLEVTNRFMPEPVRILVKKDELTLEGIKQFYIAVDREEWKLDTLCDLYETLTITQAIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQGDVRYLRDIEEFYTTQVEEMPMNVADLI 404
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: XP_009825545.1 (ATP-dependent RNA helicase eIF4A [Aphanomyces astaci] >ETV85527.1 ATP-dependent RNA helicase eIF4A [Aphanomyces astaci])

HSP 1 Score: 661.0 bits (1704), Expect = 2.400e-186
Identity = 326/386 (84.46%), Postives = 359/386 (93.01%), Query Frame = 0 
Query:   27 DTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            D +IDTNWDE +ESFD M+LR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFAISILQ ID ++RE QAL+LAPTRELA QI+KV+++LGD+    VHACVGGTAVRDDI  L+SGVH+VVGTPGRV DMINRRA +   VKLFVLDEADEMLSRGFK+QIYDVF+FLPEKVQ ALFSATMPL+VLEVT +FMR+P+RILVKRDELTLEGIKQFYIA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLT+ D RYL+DIEQFYNTQI+EMP+DVADLI
Sbjct:   22 DGDIDTNWDEVIESFDGMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAISILQKIDPALRETQALILAPTRELALQIVKVVMALGDYTGTSVHACVGGTAVRDDIRTLQSGVHIVVGTPGRVGDMINRRAFRTDNVKLFVLDEADEMLSRGFKDQIYDVFRFLPEKVQVALFSATMPLDVLEVTQRFMRDPIRILVKRDELTLEGIKQFYIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTERMQAKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTAADARYLRDIEQFYNTQIDEMPMDVADLI 407
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: XP_002997444.1 (ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4] >EEY68752.1 ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans T30-4])

HSP 1 Score: 660.6 bits (1703), Expect = 3.200e-186
Identity = 322/389 (82.78%), Postives = 364/389 (93.57%), Query Frame = 0 
Query:   24 QPTDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            Q  + +I+TNWDE +E+FD MDLR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFA+SILQ ID +++E QAL+LAPTRELAQQI+KV++++GD+M + VHACVGGTAVRDDI  L+ GVH+VVGTPGRV DMINRRAL+   VK+FVLDEADEMLSRGFK+QIY+VF+FLPEKVQ ALFSATMPL+VLEVT++FMREP+RILVKRDELTLEGIKQF+IA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLT  DVRYL+DIEQFYNTQI+EMP++VADLI
Sbjct:   23 QLNEGDIETNWDEVIETFDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQKIDINLKETQALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLEVTHRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRDIEQFYNTQIDEMPMNVADLI 411
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: XP_024576048.1 (atp-dependent rna helicase eif4a [Plasmopara halstedii] >CEG39679.1 atp-dependent rna helicase eif4a [Plasmopara halstedii])

HSP 1 Score: 660.2 bits (1702), Expect = 4.100e-186
Identity = 322/389 (82.78%), Postives = 363/389 (93.32%), Query Frame = 0 
Query:   24 QPTDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            Q  + +I+TNWDE +E+FD MDLR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFA+SILQ ID  ++E QAL+LAPTRELAQQI+KV++++GD+M + VHACVGGTAVRDDI  L+ GVH+VVGTPGRV DMINRRAL+   VK+FVLDEADEMLSRGFK+QIY+VF+FLPEKVQ ALFSATMPL+VLEVT++FMREP+RILVKRDELTLEGIKQF+IA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLT  DVRYL+DIEQFYNTQI+EMP++VADLI
Sbjct:   22 QLNEGDIETNWDEVIETFDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQKIDIGLKETQALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLEVTHRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRDIEQFYNTQIDEMPMNVADLI 410
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: POM77774.1 (ATP-dependent RNA helicase eIF4A [Phytophthora palmivora var. palmivora])

HSP 1 Score: 660.2 bits (1702), Expect = 4.100e-186
Identity = 322/389 (82.78%), Postives = 363/389 (93.32%), Query Frame = 0 
Query:   24 QPTDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            Q  + +I+TNWDE +E+FD MDLR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFA+SILQ ID +++E QAL+LAPTRELAQQI+KV++++GD+M + VHACVGGTAVRDDI  L+ GVH+VVGTPGRV DMINRRAL+   VK+FVLDEADEMLSRGFK+QIY+VF+FLPEKVQ ALFSATMPL+VLEVT +FMREP+RILVKRDELTLEGIKQF+IA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLT  DVRYL+DIEQFYNTQI+EMP++VADLI
Sbjct:   22 QLNEGDIETNWDEVIETFDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQKIDINLKETQALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLEVTRRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRDIEQFYNTQIDEMPMNVADLI 410
[Close]
BLAST of NO23G00770 vs. NCBI_GenBank
Match: XP_009517402.1 (hypothetical protein PHYSODRAFT_358814 [Phytophthora sojae] >EGZ30127.1 hypothetical protein PHYSODRAFT_358814 [Phytophthora sojae])

HSP 1 Score: 658.7 bits (1698), Expect = 1.200e-185
Identity = 321/389 (82.52%), Postives = 363/389 (93.32%), Query Frame = 0 
Query:   24 QPTDTEIDTNWDECVESFDSMDLRDDLLRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQSIDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDDISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKEQIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLEGIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQKRDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQIEEMPVDVADLI 413
            Q  + +I+TNWDE +E+FD M+LR+DLLRGIYAYGFEKPSAIQQRAVKP+L+G D IAQAQSGTGKTATFA+SILQ ID +++E QAL+LAPTRELAQQI+KV++++GD+M + VHACVGGTAVRDDI  L+ GVH+VVGTPGRV DMINRRAL+   VK+FVLDEADEMLSRGFK+QIY+VF+FLPEKVQ ALFSATMPL+VLEVT +FMREP+RILVKRDELTLEGIKQF+IA++RE+WK DTLCDLYETLTITQAIIYCNTRRKVDWLTE MQ +DFTVSAMHGDM+QRERDIIM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLT  DVRYL+DIEQFYNTQI+EMP++VADLI
Sbjct:  185 QLNEGDIETNWDEVIETFDGMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQKIDINLKETQALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLEVTRRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCDLYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLRDIEQFYNTQIDEMPMNVADLI 573
The following BLAST results are available for this feature:
BLAST of NO23G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22954.13.600e-21492.25eukaryotic initiation factor 4a [Nannochloropsis g... [more]
OQR92916.11.300e-18781.73ATP-dependent RNA helicase eIF4A [Achlya hypogyna][more]
XP_008605124.13.800e-18782.34ATP-dependent RNA helicase eIF4A [Saprolegnia dicl... [more]
GAX93656.16.400e-18784.20ATP-dependent RNA helicase eIF4A [Pythium insidios... [more]
CBJ30606.11.900e-18683.20eukaryotic initiation factor 4A [Ectocarpus silicu... [more]
XP_009825545.12.400e-18684.46ATP-dependent RNA helicase eIF4A [Aphanomyces asta... [more]
XP_002997444.13.200e-18682.78ATP-dependent RNA helicase eIF4A, putative [Phytop... [more]
XP_024576048.14.100e-18682.78atp-dependent rna helicase eif4a [Plasmopara halst... [more]
POM77774.14.100e-18682.78ATP-dependent RNA helicase eIF4A [Phytophthora pal... [more]
XP_009517402.11.200e-18582.52hypothetical protein PHYSODRAFT_358814 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006327NSK006327Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00770.1NO23G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601990gene_8428Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g18gene7492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00770.1NO23G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00770 ID=NO23G00770|Name=NO23G00770|organism=Nannochloropsis oceanica|type=gene|length=1815bp
ATGGCTGCCGATCCGAAAGCCGCTGCCACAGCTTCTGGCCCGGCGGACGG
TCCGGGCCTTAACTCGTCGCAGCCCACAGATACGGAGATCGACACGAACT
GGGACGAATGCGTCGAGTCTTTCGACTCCATGGACCTGCGAGATGACCTT
CTCCGCGGCATCTACGCGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCA
GCGGGCTGTCAAACCTGTCCTCATGGGTCGGGACGTAATAGCACAAGCCC
AGTCAGgtgagaaatgggtgggtttgtttgtcgaagaggcggtggattgt
aaagggagggagaaagcggaatttgagggagaggaggccaaacctgagcc
ttattttgaaggaagaccgtgggaaatgtcacgggagatataatgggctt
ttaagactcctgattgaatgtagactaagcgtgggggtgatgattttgaa
atgtaaaacaccatctttcgagtccaagcgtccatgcggcgcgctgacga
cacgaaccattcatctctgacaacctgacccacaaatacacacatagctg
cagattaatcgtgtgtctttaattgttttcgcatccaaattccgtaccct
cacactcgcttctccgaccccctcctcttcctccccatgtgcctgcagGG
ACGGGCAAGACTGCCACGTTCGCGATCAGTATCCTGCAGTCCATTGACAC
GTCCATCCGTGAGTGCCAGGCTTTGGTTCTGGCACCCACACGAGAGCTGG
CGCAGCAGATCATGAAGGTGCTCATCTCGCTGGGCGATTTCATGGAGTTG
GACGTGCATGCGTGCGTAGGCGGCACGGCTGTGCGTGACGACATCTCCAA
GCTGCGCAGCGGGGTGCACGTGGTGGTGGGCACGCCGGGCCGCGTCTACG
ACATGATTAATCGTCGCGCGCTCAAGCTGTCGTACGTAAAGCTCTTCGTG
TTGGACGAGGCGGACGAGATGCTGAGCCGCGGCTTCAAGGAGCAGATCTA
TGATGTGTTCAAGTTCCTCCCTGAGAAGGTGCAGTGCGCACTTTTCAGCG
CTACCATGCCCCTGGAGGTGCTAGAGGTGACCAATAAGTTCATGCGCGAG
CCTGTACGCATCCTGGTGAAGCGTGACGAGCTGACACTGGAGGGCATCAA
GCAGTTCTACATCGCCGTGGAGCGCGAGGACTGGAAGCTGGACACGCTCT
GCGACCTGTACGAGACGCTCACCATCACCCAGGCCATCATCTACTGCAAC
ACTCGGAGAAAGgtaggaatctaaaggagcggcgagaggggaaaggaagg
aaggaacgtggggaagtgggacatgcacgacacggcgagaccgacgagaa
caccatgtccgaaggaatctaggaatccgtttcttttctgtagtcgtttc
cccacacctctccctccattttcttttcctccttccacctccgcagGTGG
ACTGGCTGACGGAGGCGATGCAAAAGCGCGACTTCACGGTGTCGGCCATG
CACGGCGACATGGACCAGCGGGAACGCGACATCATCATGAAGGAATTCCG
ATCCGGCTCGTCCCGCGTGCTAATCACCACCGATCTGCTGGCCCGCGGCA
TCGACGTTCAGCAAGTGTCACTTGTCATCAACTACGATTTGCCCACCAAC
CGCGAGAACTATATTCATCGTATCGGCCGCTCAGGCCGCTTCGGCCGCAA
GGGCGTGGCCATAAACTTCCTGACTTCGGGCGACGTTCGCTACCTCAAGG
ACATCGAGCAGTTCTACAACACACAAATCGAGGAGATGCCTGTCGATGTC
GCCGACCTCATCTGA
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protein sequence of NO23G00770.1

>NO23G00770.1-protein ID=NO23G00770.1-protein|Name=NO23G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MAADPKAAATASGPADGPGLNSSQPTDTEIDTNWDECVESFDSMDLRDDL
LRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQS
IDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDD
ISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKE
QIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLE
GIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQK
RDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLV
INYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQ
IEEMPVDVADLI*
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Synonyms
Publications