NO23G00740.1, NO23G00740.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G00740.1
Unique Name	NO23G00740.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2293
Alignment location	chr23:281557..283849 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:281557..283849 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G00740.1 vs.
Match: EWM22956.1 (putative microtubule-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 538.5 bits (1386), Expect = 2.200e-149
Identity = 280/497 (56.34%), Postives = 350/497 (70.42%), Query Frame = 0

Query:    8 TAADVRVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFH---LDTDDGGKGSVVVTAGKDKLVKTWGLSAAAAGTSNRKKKSTEIAAAAGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFE 502
            T  D RVRLRF TRDPTIRV+E PLAVPV+LNRRGLSEVI+HL       +G A E E   N     GYDFVIENQLLRC L+KFLRATG+STE +++VEY+RTLQAP++G+ SK E AWVGSLVAC+G     +V+AG +DG LRC++A+ C +  G W  AH GP+KA+AA      + + G     VVT GKD++VK W +     G     K++T         + PVS L+GHENSVECVAVRGK +QVL+GDW G++C WK++   +   TP  + S  +  KRKKR++ +    E+A+    +     PVS+ KAH+QC+SG++WH  + S  FTSSWDHS+K WDLE Q+CVQTLN S+VVTS A S+G+L+ AGHPDGRLR+WD+RS     G+  T A PGKRV+A CGSWISGVAWHP+R+NVLAA++HDG LRVWDLRATKPLHTL AHE KALA CFG     ++   W +FTGG DGVVR FE
Sbjct:    9 TPGDARVRLRFFTRDPTIRVSEAPLAVPVSLNRRGLSEVIDHL-------RGKAAESEITRNKKTHRGYDFVIENQLLRCPLEKFLRATGISTESSVDVEYFRTLQAPVQGSSSKSEAAWVGSLVACEGNGGEDMVLAGAFDGSLRCHSARGCVELGGRWLHAHRGPIKAMAALEPGAQEQESGASERGVVTVGKDQVVKVWQVLVGGRGERKGGKEAT---------VRPVSTLIGHENSVECVAVRGK-EQVLSGDWGGVLCLWKID---KEERTPVTAPSFTSVHKRKKRKVVEGMDDEDAS--PPIPGIHAPVSLFKAHAQCVSGVKWHPKE-SLAFTSSWDHSVKIWDLEHQNCVQTLNGSKVVTSFAISSGNLLGAGHPDGRLRIWDVRSVEEKQGM--TLAAPGKRVMASCGSWISGVAWHPQRDNVLAAISHDGYLRVWDLRATKPLHTLRAHEDKALALCFG--RARDQLGMWAIFTGGTDGVVRRFE 478

The following BLAST results are available for this feature:

BLAST of NO23G00740.1 vs.

BLAST of NO23G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22956.1	2.200e-149	56.34	putative microtubule-associated protein [Nannochlo...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G00740	NO23G00740	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00740.1	NO23G00740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00740.1.cds1	NO23G00740.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:281557..283849-
coding sequence from alignment at chr23:281557..283849-

mRNA sequence

>NO23G00740.1 ID=NO23G00740.1|Name=NO23G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp
AAAAAAGACGCACAACAGGCAAACTACTCCGGCATCGTAATCACCTCTCA
CAAGGAGAAATATCCTGGGGCTCCTAGACGGAAGGTATGCGTACTAAGCG
TGACTCGCTGCGCGAGGCAGTGCATCGTGGCCAGGAAATGGGCAAAATTG
GTTTGGATGTTTTGTCTGGGCTGTCTGTTTGTGGATGTGGTGCATCGAGT
TTATTTGTATTTCATCCCACTTGAAAGGTCCTTTCTGGTCTGGCCACCAC
AACACTGTGCCATTCGCTCCATACTCATGTATGCGTGCAAGGTTGGCATG
CTTTTCTGTCACCCTGTGATGTGCACCCTTCTCTTCTTCGTCCCCTTTCT
CTGCTGCAAATCGCTTTCTTCCACTCTTGCCCCCATTCAGAACCCAGACG
ACCCAATCAGTCCCCCTCGATTACCTCAATGTGGGAGTGCCTGATAGTTT
GACGTCGGATAGAGAAAGTGGGACGATAGCCTAGTGATGCGTAGAGACAT
CACCGCAATTACTTCTAGCACCGTCTCGAAATTTTTGGTTATTATAGTAT
GTGATATTCATTTCGTTGTCCTGTCCCTCTTTCCAGCTCTTCAATTAGGC
ATCTTGCAAAAATGACCGTAGAAATGTGCTGACATACAATTACGCTTGAA
CTTGACTCTATCACCCTTTTTCGGGGGCGTTTGCTACCTTTCAGGCAAAG
GAGGATGAACGAAACCAGTGGCAGCACCGCCGCCGATGTCCGCGTGCGTC
TCCGCTTCATCACCCGCGACCCCACCATCCGTGTCAACGAGGTGCCCTTG
GCCGTGCCGGTCGCTCTCAATCGCCGCGGGCTTTCCGAAGTTATAAACCA
CTTGCTTGGGATAGAGGGTGGGACCAAAGGATCAGCAGAGGAGGAGGAAA
AAGATGGCAACACAACGAATGCAAGTGGATACGACTTTGTGATAGAGAAC
CAGCTGTTGCGCTGCTCCCTGGACAAGTTTTTGCGGGCCACGGGGCTGTC
GACAGAGGTGACAATAAATGTGGAGTACTACCGAACGCTGCAGGCGCCGA
TTGAGGGCACTCGCAGCAAGCCCGAGGATGCCTGGGTGGGTAGTCTAGTG
GCTTGCCAGGGAGGCAGGGAGGGAGGTGTAGTGGTGGCAGGAGGGTATGA
CGGGAAGTTGCGGTGTTACGCCGCGCAGGATTGCAGCCAGAGTGTGGGGG
AGTGGTCCCAAGCTCACACTGGGCCGGTAAAGGCCGTAGCAGCTTTTCAT
TTAGATACAGACGATGGGGGAAAGGGCAGCGTGGTGGTGACAGCTGGAAA
GGACAAGCTAGTCAAGACCTGGGGGCTGTCGGCAGCGGCGGCGGGAACCA
GCAACCGCAAGAAGAAGAGTACGGAAATCGCAGCGGCCGCAGGGATAGTG
ATGTGGCCTGTGAGCGTTTTAATGGGCCACGAGAACAGCGTAGAGTGCGT
GGCGGTGCGGGGAAAGCAGCAGCAGGTGCTCACGGGTGATTGGAGCGGGA
TGATGTGCTTCTGGAAGCTTGAGGGAGGGGGCGAAACGTTTTCTACCCCT
GCCTTCTCTTCTTCTACAATCACTTCTCAAAAAAGGAAGAAACGCAGAAT
GTATGACGTTCAGGTCGGGGAGGAGGCGGCAGCAGTACAAGCAGTCGCCA
GCACCCTGACGCCCGTGTCTGTTTTGAAGGCCCACAGCCAGTGCATGAGC
GGCATTGAGTGGCACCAGGCCGATGTGTCCAGGGTCTTCACCTCCTCCTG
GGATCACTCCATCAAGTCCTGGGATCTGGAGCGACAAGACTGCGTGCAGA
CACTCAACAGCAGCAGGGTTGTTACGTCGCTTGCCGCTTCGGCCGGTAGT
CTTGTGGCGGCGGGCCACCCCGACGGACGCTTGCGGGTGTGGGATCTCCG
TTCTTCCTCAACAGACAACGGAGTGGAAGGGACATCGGCCACGCCGGGAA
AGCGCGTGCTGGCTGGTTGTGGTTCGTGGATATCGGGGGTTGCCTGGCAT
CCGCGTCGAGAGAATGTGCTTGCCGCGCTTACCCACGACGGGCTTTTGCG
CGTGTGGGACTTGAGGGCGACCAAGCCGCTGCACACACTGACGGCGCACG
AAGGGAAGGCTTTGGCTTCATGTTTTGGGTGGAGGACTGGCGGGGAGGAG
GGGGCGGCATGGCCTTTGTTTACGGGAGGGGCAGACGGCGTAGTGCGGAG
CTTCGAGATATAAAAATATCGACGGAGGAAGTGTATGACCCAAGCAAAAG
TAAAAAGTTTAGAGGGTCGTCTGCCAGAAAATCAATGCGCCAT

protein sequence of NO23G00740.1

>NO23G00740.1-protein ID=NO23G00740.1-protein|Name=NO23G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MNETSGSTAADVRVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHL
LGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLST
EVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDG
KLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKD
KLVKTWGLSAAAAGTSNRKKKSTEIAAAAGIVMWPVSVLMGHENSVECVA
VRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMY
DVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWD
HSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRS
SSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRV
WDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSF
EI*

mRNA from alignment at chr23:281557..283849-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G00740.1 ID=NO23G00740.1|Name=NO23G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at chr23:281557..283849- (Nannochloropsis oceanica)
AAAAAAGACGCACAACAGGCAAACTACTCCGGCATCGTAATCACCTCTCA
CAAGGAGAAATATCCTGGGGCTCCTAGACGGAAGGTATGCGTACTAAGCG
TGACTCGCTGCGCGAGGCAGTGCATCGTGGCCAGGAAATGGGCAAAATTG
GTTTGGATGTTTTGTCTGGGCTGTCTGTTTGTGGATGTGGTGCATCGAGT
TTATTTGTATTTCATCCCACTTGAAAGGTCCTTTCTGGTCTGGCCACCAC
AACACTGTGCCATTCGCTCCATACTCATGTATGCGTGCAAGGTTGGCATG
CTTTTCTGTCACCCTGTGATGTGCACCCTTCTCTTCTTCGTCCCCTTTCT
CTGCTGCAAATCGCTTTCTTCCACTCTTGCCCCCATTCAGAACCCAGACG
ACCCAATCAGTCCCCCTCGATTACCTCAATGTGGGAGTGCCTGATAGTTT
GACGTCGGATAGAGAAAGTGGGACGATAGCCTAGTGATGCGTAGAGACAT
CACCGCAATTACTTCTAGCACCGTCTCGAAATTTTTGGTTATTATAGTAT
GTGATATTCATTTCGTTGTCCTGTCCCTCTTTCCAGCTCTTCAATTAGGC
ATCTTGCAAAAATGACCGTAGAAATGTGCTGACATACAATTACGCTTGAA
CTTGACTCTATCACCCTTTTTCGGGGGCGTTTGCTACCTTTCAGGCAAAG
GAGGATGAACGAAACCAGTGGCAGCACCGCCGCCGATGTCCGCGTGCGTC
TCCGCTTCATCACCCGCGACCCCACCATCCGTGTCAACGAGGTGCCCTTG
GCCGTGCCGGTCGCTCTCAATCGCCGCGGGCTTTCCGAAGTTATAAACCA
CTTGCTTGGGATAGAGGGTGGGACCAAAGGATCAGCAGAGGAGGAGGAAA
AAGATGGCAACACAACGAATGCAAGTGGATACGACTTTGTGATAGAGAAC
CAGCTGTTGCGCTGCTCCCTGGACAAGTTTTTGCGGGCCACGGGGCTGTC
GACAGAGGTGACAATAAATGTGGAGTACTACCGAACGCTGCAGGCGCCGA
TTGAGGGCACTCGCAGCAAGCCCGAGGATGCCTGGGTGGGTAGTCTAGTG
GCTTGCCAGGGAGGCAGGGAGGGAGGTGTAGTGGTGGCAGGAGGGTATGA
CGGGAAGTTGCGGTGTTACGCCGCGCAGGATTGCAGCCAGAGTGTGGGGG
AGTGGTCCCAAGCTCACACTGGGCCGGTAAAGGCCGTAGCAGCTTTTCAT
TTAGATACAGACGATGGGGGAAAGGGCAGCGTGGTGGTGACAGCTGGAAA
GGACAAGCTAGTCAAGACCTGGGGGCTGTCGGCAGCGGCGGCGGGAACCA
GCAACCGCAAGAAGAAGAGTACGGAAATCGCAGCGGCCGCAGGGATAGTG
ATGTGGCCTGTGAGCGTTTTAATGGGCCACGAGAACAGCGTAGAGTGCGT
GGCGGTGCGGGGAAAGCAGCAGCAGGTGCTCACGGGTGATTGGAGCGGGA
TGATGTGCTTCTGGAAGCTTGAGGGAGGGGGCGAAACGTTTTCTACCCCT
GCCTTCTCTTCTTCTACAATCACTTCTCAAAAAAGGAAGAAACGCAGAAT
GTATGACGTTCAGGTCGGGGAGGAGGCGGCAGCAGTACAAGCAGTCGCCA
GCACCCTGACGCCCGTGTCTGTTTTGAAGGCCCACAGCCAGTGCATGAGC
GGCATTGAGTGGCACCAGGCCGATGTGTCCAGGGTCTTCACCTCCTCCTG
GGATCACTCCATCAAGTCCTGGGATCTGGAGCGACAAGACTGCGTGCAGA
CACTCAACAGCAGCAGGGTTGTTACGTCGCTTGCCGCTTCGGCCGGTAGT
CTTGTGGCGGCGGGCCACCCCGACGGACGCTTGCGGGTGTGGGATCTCCG
TTCTTCCTCAACAGACAACGGAGTGGAAGGGACATCGGCCACGCCGGGAA
AGCGCGTGCTGGCTGGTTGTGGTTCGTGGATATCGGGGGTTGCCTGGCAT
CCGCGTCGAGAGAATGTGCTTGCCGCGCTTACCCACGACGGGCTTTTGCG
CGTGTGGGACTTGAGGGCGACCAAGCCGCTGCACACACTGACGGCGCACG
AAGGGAAGGCTTTGGCTTCATGTTTTGGGTGGAGGACTGGCGGGGAGGAG
GGGGCGGCATGGCCTTTGTTTACGGGAGGGGCAGACGGCGTAGTGCGGAG
CTTCGAGATATAAAAATATCGACGGAGGAAGTGTATGACCCAAGCAAAAG
TAAAAAGTTTAGAGGGTCGTCTGCCAGAAAATCAATGCGCCAT

Coding sequence (CDS) from alignment at chr23:281557..283849-

>NO23G00740.1 ID=NO23G00740.1|Name=NO23G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr23:281557..283849- (Nannochloropsis oceanica)
ATGAACGAAACCAGTGGCAGCACCGCCGCCGATGTCCGCGTGCGTCTCCG
CTTCATCACCCGCGACCCCACCATCCGTGTCAACGAGGTGCCCTTGGCCG
TGCCGGTCGCTCTCAATCGCCGCGGGCTTTCCGAAGTTATAAACCACTTG
CTTGGGATAGAGGGTGGGACCAAAGGATCAGCAGAGGAGGAGGAAAAAGA
TGGCAACACAACGAATGCAAGTGGATACGACTTTGTGATAGAGAACCAGC
TGTTGCGCTGCTCCCTGGACAAGTTTTTGCGGGCCACGGGGCTGTCGACA
GAGGTGACAATAAATGTGGAGTACTACCGAACGCTGCAGGCGCCGATTGA
GGGCACTCGCAGCAAGCCCGAGGATGCCTGGGTGGGTAGTCTAGTGGCTT
GCCAGGGAGGCAGGGAGGGAGGTGTAGTGGTGGCAGGAGGGTATGACGGG
AAGTTGCGGTGTTACGCCGCGCAGGATTGCAGCCAGAGTGTGGGGGAGTG
GTCCCAAGCTCACACTGGGCCGGTAAAGGCCGTAGCAGCTTTTCATTTAG
ATACAGACGATGGGGGAAAGGGCAGCGTGGTGGTGACAGCTGGAAAGGAC
AAGCTAGTCAAGACCTGGGGGCTGTCGGCAGCGGCGGCGGGAACCAGCAA
CCGCAAGAAGAAGAGTACGGAAATCGCAGCGGCCGCAGGGATAGTGATGT
GGCCTGTGAGCGTTTTAATGGGCCACGAGAACAGCGTAGAGTGCGTGGCG
GTGCGGGGAAAGCAGCAGCAGGTGCTCACGGGTGATTGGAGCGGGATGAT
GTGCTTCTGGAAGCTTGAGGGAGGGGGCGAAACGTTTTCTACCCCTGCCT
TCTCTTCTTCTACAATCACTTCTCAAAAAAGGAAGAAACGCAGAATGTAT
GACGTTCAGGTCGGGGAGGAGGCGGCAGCAGTACAAGCAGTCGCCAGCAC
CCTGACGCCCGTGTCTGTTTTGAAGGCCCACAGCCAGTGCATGAGCGGCA
TTGAGTGGCACCAGGCCGATGTGTCCAGGGTCTTCACCTCCTCCTGGGAT
CACTCCATCAAGTCCTGGGATCTGGAGCGACAAGACTGCGTGCAGACACT
CAACAGCAGCAGGGTTGTTACGTCGCTTGCCGCTTCGGCCGGTAGTCTTG
TGGCGGCGGGCCACCCCGACGGACGCTTGCGGGTGTGGGATCTCCGTTCT
TCCTCAACAGACAACGGAGTGGAAGGGACATCGGCCACGCCGGGAAAGCG
CGTGCTGGCTGGTTGTGGTTCGTGGATATCGGGGGTTGCCTGGCATCCGC
GTCGAGAGAATGTGCTTGCCGCGCTTACCCACGACGGGCTTTTGCGCGTG
TGGGACTTGAGGGCGACCAAGCCGCTGCACACACTGACGGCGCACGAAGG
GAAGGCTTTGGCTTCATGTTTTGGGTGGAGGACTGGCGGGGAGGAGGGGG
CGGCATGGCCTTTGTTTACGGGAGGGGCAGACGGCGTAGTGCGGAGCTTC
GAGATATAA

Synonyms

Publications