NO23G00740, NO23G00740 (gene) Nannochloropsis oceanica

Overview
NameNO23G00740
Unique NameNO23G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2293
Alignment locationchr23:281557..283849 -

Link to JBrowse

Properties
Property NameValue
DescriptionTransducin/WD40 repeat-like superfamily protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:281557..283849 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR012972NLE
IPR001680WD40_repeat
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005634nucleus
Homology
BLAST of NO23G00740 vs. NCBI_GenBank
Match: EWM22956.1 (putative microtubule-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 531.9 bits (1369), Expect = 2.100e-147
Identity = 277/497 (55.73%), Postives = 345/497 (69.42%), Query Frame = 0
Query:    8 TAADVRVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFH---LDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFE 502
            T  D RVRLRF TRDPTIRV+E PLAVPV+LNRRGLSEVI+HL       +G A E E   N     GYDFVIENQLLRC L+KFLRATG+STE +++VEY+RTLQAP++G+ SK E AWVGSLVAC+G     +V+AG +DG LRC++A+ C +  G W  AH GP+KA+AA      + + G     VVT GKD++VK W +                        + PVS L+GHENSVECVAVRGK +QVL+GDW G++C WK++   +   TP  + S  +  KRKKR++ +    E+A+    +     PVS+ KAH+QC+SG++WH  + S  FTSSWDHS+K WDLE Q+CVQTLN S+VVTS A S+G+L+ AGHPDGRLR+WD+RS     G+  T A PGKRV+A CGSWISGVAWHP+R+NVLAA++HDG LRVWDLRATKPLHTL AHE KALA CFG     ++   W +FTGG DGVVR FE
Sbjct:    9 TPGDARVRLRFFTRDPTIRVSEAPLAVPVSLNRRGLSEVIDHL-------RGKAAESEITRNKKTHRGYDFVIENQLLRCPLEKFLRATGISTESSVDVEYFRTLQAPVQGSSSKSEAAWVGSLVACEGNGGEDMVLAGAFDGSLRCHSARGCVELGGRWLHAHRGPIKAMAALEPGAQEQESGASERGVVTVGKDQVVKVWQVLVGGRGERKGGKE---------ATVRPVSTLIGHENSVECVAVRGK-EQVLSGDWGGVLCLWKID---KEERTPVTAPSFTSVHKRKKRKVVEGMDDEDAS--PPIPGIHAPVSLFKAHAQCVSGVKWHPKE-SLAFTSSWDHSVKIWDLEHQNCVQTLNGSKVVTSFAISSGNLLGAGHPDGRLRIWDVRSVEEKQGM--TLAAPGKRVMASCGSWISGVAWHPQRDNVLAAISHDGYLRVWDLRATKPLHTLRAHEDKALALCFG--RARDQLGMWAIFTGGTDGVVRRFE 478          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: GAY02178.1 (Hypothetical protein PINS_010012 [Pythium insidiosum])

HSP 1 Score: 235.3 bits (599), Expect = 4.000e-58
Identity = 152/493 (30.83%), Postives = 247/493 (50.10%), Query Frame = 0
Query:   13 RVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQ-DCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSV--VVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFEI 503
            +VR++F+T++  IRV E P AVP+ LNR+GLS+V+NHLL                 NT     +DF+I+   LR SL+K+++   LS E  + +EY   L  P +   +   D WV ++ A Q      +VV G YDG++R Y  + +C  SV    +AH G VKAV+          K +V  + ++GKD++ + W  +A                      +  V+ L GH NSV+ +A+  + ++ LTG W   +  W +  G E           ++  + KK++  D +     +  Q  A       VL  H+  ++G+ +H  D  +V ++  D SI+ WDL    C QT+  +R +TS++ +A  +V   HPD  +R+WD R  +T NG      +  +R       W++ V+WHP  E++  +  +DG ++VWD+R+T PLHT+ AH+GKAL     WR   E   ++   +GG D  ++ F +
Sbjct:  175 QVRVKFVTKNAAIRVTETPFAVPMRLNRQGLSQVVNHLL-----------------NTAEPRPFDFLIDGNFLRTSLEKYMQRHALSEESMLTLEYVEALPEPSQKNETNHPD-WVSAVSAAQ-----DIVVTGCYDGQVRVYDLEGNCLASV----KAHQGAVKAVSV------QLAKQNVFLITSSGKDQMGQVWRFNAATRQ------------------LSAVASLTGHLNSVDAIALDARAERALTGSWDNTVRVWMVPSGSEAVE--------VSDAQPKKKQKSDAKSSGVVSFSQLEAEI-----VLVGHTSYVTGVAFHPTDAHQVVSAGSDRSIRLWDLTTHQCKQTMKGNRAITSVSVNANGMVVTAHPDHCVRLWDPR--ATQNG-----ESLVQRTFQSHREWVNAVSWHPTNEHLFLSGGYDGAVKVWDVRSTIPLHTVAAHDGKALD--VAWRPVDEPAVSF--VSGGEDKQLKLFSV 592          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: CBN79371.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 224.6 bits (571), Expect = 7.100e-55
Identity = 163/527 (30.93%), Postives = 247/527 (46.87%), Query Frame = 0
Query:    3 ETSGSTAADVRVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAG-----KDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAV-------RGKQQQVLTGDWSGMMCFWK---LEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEW-------HQADV----SRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAAS-AGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFEI 503
            E S   A   +VR++F+T+ P+IRV E P+AVP +L R GLSEV+NHLLG +  T                  +D ++  + LR SL   ++   LS E  + VEY   L+ P E   +   D WV ++     G E    V G YDG LR Y        V    +AH  PV A+ A  + +  GG+      AG     KD   + W  +                       +   ++L GH NS+             G   +  TGDWSG +C W    LEGG          +    +Q  K+R+                   LTP++  +AH+Q ++G+           A V    S ++++S D ++K+WD ERQDC+ TLN+ + VT L  S +G ++A GHPD R+R+WD R+       +G + T  +  L+    W++GV W P  E ++ + +HDG +++WD+R+T PLH+  AH GKAL  C GW+ G        + +GG DG V+++ +
Sbjct:    5 EPSDDEADAGKVRVKFVTKVPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTP-----------------FDMLVMGRFLRSSLRSVMQRHALSGEAVLEVEYLPALRQPTEAEHADQPD-WVSAVAGAGAGLE--TFVTGCYDGCLRVYGP---GCKVTSLEKAHQAPVTALCA--VPSLAGGRPGGAHAAGFLSGSKDMTARLWRRAGSGGNSS----------------LEAAAILRGHANSISAAHAAASGSGDSGGAPRAYTGDWSGHVCLWDVACLEGG---------HADGDDAQGTKRRK----XXXXXXXXXXXXXXELTPLASFRAHAQAVTGLAGPGGVGRPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRT-------QGETLT--RASLSSHKQWVTGVKWAPGSETMVLSCSHDGSVKLWDIRSTLPLHSAQAHRGKAL--CCGWQDG-------KIVSGGEDGAVKTYVV 459          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: XP_009533383.1 (hypothetical protein PHYSODRAFT_563571 [Phytophthora sojae] >EGZ10638.1 hypothetical protein PHYSODRAFT_563571 [Phytophthora sojae])

HSP 1 Score: 216.9 bits (551), Expect = 1.500e-52
Identity = 159/500 (31.80%), Postives = 230/500 (46.00%), Query Frame = 0
Query:   13 RVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQ-DCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEW------HQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHP---RRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFEI 503
            +VR++F+T+D +IRV E P AVP  LNRRGLS+V+NHLL    G K                 +DF+I+   LR SLDKFL+ +G+S E  + +EY   L  P + + S   D WV ++ A     +G +VV G YDG LR Y AQ DC  SV    +AH G VKAV+       DG    V+ ++GKD+L + W  S                       + PV+ L GH NSV+ V +    Q+V+TG W   +  W+  G  E              ++R  ++    + G  A + Q + + +    VL  H+  ++G+ +      H  DV  V ++  D +++ WDL  Q C Q+L  +R V+ L+ SA                                   +R       W+S VAWHP     E++  +  +DG  +VWD R+T PLHT+ AHEGK L     WR  GE        TGG D  +  F +
Sbjct:    7 QVRVKFVTKDASIRVTETPFAVPTRLNRRGLSQVVNHLLAT--GDK--------------PRPFDFLIDGLFLRSSLDKFLQTSGVSEEALLTLEYVEALPEPQKQSGSDHPD-WVSAVAAL----DGDLVVTGCYDGVLRVYDAQGDCKASV----KAHQGAVKAVSVAPSAEKDG--EFVIASSGKDQLAQLWRFSTITAK------------------LAPVAALTGHLNSVDTVQMHASGQRVVTGSWDNTVRVWQAPGASED-----------AGEQRSAKKHKKTEDGAGAVSFQQLEAEI----VLVGHTSYVTGVAFRPKNSEHDEDV--VVSAGSDRTVRLWDLVTQSCSQSLVGNRAVSDLSVSANG-------XXXXXXXXXXXXXXXXXXXXXXXXXXQRTFRSHKEWVSSVAWHPDSSSNEHLFVSGGYDGTAKVWDARSTIPLHTVNAHEGKLLD--LSWRNQGEGDNNVAFVTGGEDKKLNFFSV 435          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: XP_002903027.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56197.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 212.6 bits (540), Expect = 2.800e-51
Identity = 157/497 (31.59%), Postives = 232/497 (46.68%), Query Frame = 0
Query:   13 RVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQ-DCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEW------HQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFEI 503
            +VR++F+T+D +IRV E P AVP  LNRRGLS+V+NHLL      +                 +DF+I+   LR SLDK+L+   +S E  + +EY   L  P +   S   D WV ++ +     +  +VV G YDG LR Y AQ DC  SV    +AH G VKAV+   + +   G+  VV ++GKD+L + W  +                       + P++ L GH NSV+ V +     +V+TG W   +  W+   G E       SS   +S+K KK         ++A AV      L    VL  H+  ++G+ +      H  DV  V ++  D S++ WDL  Q C Q L  +R V+ L  +A  L+              R+  +   +        +R       W+S V+WHP  E++  +  +DG  +VWD R+T PLHT++AHEGK L     WR   E  A     TGG D  +  F +
Sbjct:    7 QVRVKFVTKDGSIRVTETPFAVPSRLNRRGLSQVVNHLLATGDSPR----------------PFDFLIDGLFLRSSLDKYLQTNDVSEEALLTLEYVEALPEPQKQNGSDHPD-WVSAVASL----DDELVVTGCYDGVLRVYDAQGDCKASV----KAHQGAVKAVS---VSSSKSGE-FVVASSGKDQLAQLWRYTVKSSK------------------LSPLAALTGHLNSVDAVQLHASGNRVVTGSWDNTVRVWQTPNGSED------SSEQRSSKKHKKTE-------DDAGAVS--FRQLEAEIVLVGHTSYVTGVAFRPKTSEHDEDV--VVSAGSDRSVRLWDLVTQSCSQALAGNRAVSDLTVNATGLILTAXXXXXXXXXXPRAQQSGESIV-------QRTFRSHKEWVSSVSWHPSNEHLFVSGGYDGTAKVWDARSTIPLHTVSAHEGKVLD--LSWRNQEESVA---FVTGGDDKKLNFFNV 427          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: PNW70201.1 (hypothetical protein CHLRE_17g710100v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 212.2 bits (539), Expect = 3.600e-51
Identity = 155/503 (30.82%), Postives = 232/503 (46.12%), Query Frame = 0
Query:    9 AADVRVRLRFITRDPT-IRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSL-------VACQGGREGGVVVAGGYDGKLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGS--LVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFE 502
            A + +V ++F+T+ P  +RV E P+AVP  L R GLS++INHLL ++                     +DF+I+ +L+R SL++ L A  LS E T+ VEY   +  P +   S P D WV S+        +  GG   GVVV+G YDG LR +      ++V   S AH G V  V           +G +++T+GKD+LVK W L +                   G     V+   GHE+ VE VA     ++  +  W G +  W+   GG   +  A +                              +   P + L+ H  C+S + W     + +F+  WDHS++ WD+       T N S+ V  +A+ A S  LVA G  D  LR+WD R  +  + +  T  T G       G W++ VAW P  ++ +A+ +HDG +++WD+R   PL  L+ H  K LA   GW  G E G A  L +GGAD  +R +E
Sbjct:    2 AEETQVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALD-----------------PPRPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPAV-VPPQQKNSTPHDDWVSSVDGSRCAPASSSGGSPSGVVVSGSYDGLLRLWNGD--LEAVASVS-AHAGGVNCVRFL-----PKSQGDLLLTSGKDRLVKMWQLES------------SSEEEDAGPSCRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWE---GGRAVAEAAEADEXXXXXXXXXXXXXXXXXXXXXXXXXXGLTIAEPSADLRGHLHCVSSVAWPAE--NSLFSGGWDHSVRRWDVSSGAAADTYNGSKAVLCIASHAASPALVAFGCSDRALRLWDTRGKAGSDALAVT--TQGAH-----GGWVTAVAWCPSSQHHIASASHDGTIKMWDIRTQIPLGMLSHHTDKVLA--LGWLGGAEAGHARGLVSGGADCQLRMYE 452          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: A8IR43.2 (RecName: Full=Ribosome biogenesis protein WDR12 homolog)

HSP 1 Score: 210.7 bits (535), Expect = 1.100e-50
Identity = 157/503 (31.21%), Postives = 232/503 (46.12%), Query Frame = 0
Query:    9 AADVRVRLRFITRDPT-IRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSL-------VACQGGREGGVVVAGGYDGKLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGS--LVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFE 502
            A + +V ++F+T+ P  +RV E P+AVP  L R GLS++INHLL ++                     +DF+I+ +L+R SL++ L A  LS E T+ VEY   +  P +   S P D WV S+        +  GG   GVVV+G YDG LR +      ++V   S AH G V  V           +G +++T+GKD+LVK W LS+                   G     V+   GHE+ VE VA     ++  +  W G +  W+   GGE     A ++                      A              L+ H  C+S + W     + +F+  WDHS++ WD+       T N S+ V  +A+ A S  LVA G  D  LR+WD R  +  + +  T  T G       G W++ VAW P  ++ +A+ +HDG +++WD+R   PL  L+ H  K LA   GW  G E G A  L +GGAD  +R +E
Sbjct:    2 AEETQVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALD-----------------PPRPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPAV-VPPQQKNSTPHDDWVSSVDGSRCAPASSSGGSPSGVVVSGSYDGLLRLWNGD--LEAVASVS-AHAGGVNCVRFL-----PKSQGDLLLTSGKDRLVKMWQLSS-------------SEEEDAGPSCRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWE---GGEQLRWAAGTAEAXXXXXXXXXXXXXXXXXXXXAD-------------LRGHLHCVSSVAWPAE--NSLFSGGWDHSVRRWDVSSGAAADTYNGSKAVLCIASHAASPALVAFGCSDRALRLWDTRGKAGSDALAVT--TQGAH-----GGWVTAVAWCPSSQHHIASASHDGTIKMWDIRTQIPLGMLSHHTDKVLA--LGWLGGAEAGHARGLVSGGADCQLRMYE 438          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: EJK47630.1 (hypothetical protein THAOC_33634 [Thalassiosira oceanica])

HSP 1 Score: 204.5 bits (519), Expect = 7.600e-49
Identity = 143/500 (28.60%), Postives = 232/500 (46.40%), Query Frame = 0
Query:   31 PLAVPVALNRRGLSEVINHLLG----IEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGR-EGGVVVAGGYDGKLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVR--GKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGS-LVAAGHPDGRLRVWDLRSSSTDNG-------------------VEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRVWDLRATKPLHTLTAHE---GKALASCFGWRTGGEEGAAWPLFTGGADGVVRSF 501
            P+AVP  + ++GLS V+NHLL      +G     ++++  +     A  +DF++ ++LLR  LD   R  GLSTE  + ++Y+     P     S+    W+ S+  C G + + GV+  GG DG +R + + D        +  HT P+K ++            ++V T   D+ + T                        G +        GH NS+  VA++  G +  + +GDW G +  W++ G     +     ++T  ++K K  R      G   ++  A    + P+  +KAHS  +SG+E+     +++ T  WDH +K +D  R DC+ TLN SRV+TSL+  + S +VA   PD  +R+WDLR+ + ++G                   + G  A     V      W+S V W P    VLA+ +HDG L+VWD+R+T PLH++ A +    KAL   FG            ++TGG+D VV  F
Sbjct:   44 PMAVPATIRKKGLSAVVNHLLDRKVPTDGENSPDSDDDSDEEERLPAIPFDFLLNDRLLRLPLDSAARKEGLSTEHALELQYFPARLPPRREDESETLPDWITSMSFCSGSKNDEGVLFTGGADGAIRSFFSHDGRLQPVVTASCHTSPIKCLSTI----QQSDANTLVATGSLDQTLIT-------------------HTCKGGAMKLHALYSGGHTNSIGSVAMKNDGGETLMSSGDWDGGLSLWRIPGVSAESND---ENATALTKKSKGNR------GSANSSSVAKLQEVKPLHSIKAHSSSISGLEFGFESPTKLLTGGWDHGLKVYDTNRMDCILTLNGSRVITSLSRCSNSDVVATSSPDCAVRLWDLRTGAGESGNVKTMDKSLRQSHKGAYVAMRGQLAEIFSTVGLSHLGWVSSVQWSPNDPFVLASASHDGSLKVWDIRSTTPLHSVRAVKKKGEKALCLAFGHDM---------VYTGGSDCVVSQF 502          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: XP_008898284.1 (hypothetical protein PPTG_06147 [Phytophthora parasitica INRA-310] >ETI31684.1 hypothetical protein F443_21394 [Phytophthora parasitica P1569] >ETK72054.1 hypothetical protein L915_20793 [Phytophthora parasitica] >ETL25482.1 hypothetical protein L916_20676 [Phytophthora parasitica] >ETL78695.1 hypothetical protein L917_20538 [Phytophthora parasitica] >ETM31961.1 hypothetical protein L914_20553 [Phytophthora parasitica] >ETN15869.1 hypothetical protein PPTG_06147 [Phytophthora parasitica INRA-310] >ETO60388.1 hypothetical protein F444_21413 [Phytophthora parasitica P1976] >ETP01495.1 hypothetical protein F441_21283 [Phytophthora parasitica CJ01A1] >ETP29648.1 hypothetical protein F442_21232 [Phytophthora parasitica P10297])

HSP 1 Score: 198.7 bits (504), Expect = 4.200e-47
Identity = 151/499 (30.26%), Postives = 230/499 (46.09%), Query Frame = 0
Query:   13 RVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQ-DCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEW------HQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHP--RRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFEI 503
            +VR++F+T+D +IRV E P AVP  LNRRGLS+V+NHLL      +                 +DF+I+   LR SLDK+L+  G+S E  + +EY   L  P +   S   D WV ++ +     +  +VV G YDG LR Y AQ DC  SV    +AH G +KAV+     + +     ++ ++GKD+L + W  +                       + P++ L GH NSV+ V +    ++V+TG W   +  W+         TP  S    +++K KK         ++A AV      L    VL  H+  ++G+ +      H  DV  V ++  D +++ WDL  Q C Q L  +R V+ L+ +A  L                       +        +R       W+S V WHP    E++  + ++DG  +VWD R+T PLHT++AHEGK L     WR    EG A+   TGG D  +  F +
Sbjct:    7 QVRVKFVTKDASIRVTETPFAVPTRLNRRGLSQVVNHLLATGDSPR----------------PFDFLIDGLFLRSSLDKYLQTHGVSEEALLTLEYVEALPEPQKQNGSDHPD-WVSAVASL----DDELVVTGCYDGVLRVYDAQGDCKASV----KAHQGAIKAVSVASSKSGE----FIIASSGKDQLAQLWRYTIKLSK------------------LSPMAALTGHLNSVDAVQMHALGKRVVTGSWDNTVRVWQ---------TPEESGEQRSAKKHKKTE-------DDAGAVS--FQQLEAEIVLVGHTSYVTGVAFRPKTSEHDEDV--VVSAGSDRNVRLWDLVTQSCSQALVGNRAVSDLSVNANGLXXXXXXXXXXXXXXXXXXXXXXSIV-------QRTFRSHKEWVSSVDWHPDSNNEHLFVSGSYDGTAKVWDARSTIPLHTVSAHEGKLLD--LSWR-NQNEGVAF--VTGGDDKKLNFFSV 426          
BLAST of NO23G00740 vs. NCBI_GenBank
Match: KUF79381.1 (Ribosome biogenesis protein WDR12 [Phytophthora nicotianae] >KUF80882.1 Ribosome biogenesis protein WDR12 [Phytophthora nicotianae])

HSP 1 Score: 198.7 bits (504), Expect = 4.200e-47
Identity = 151/499 (30.26%), Postives = 230/499 (46.09%), Query Frame = 0
Query:   13 RVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHLLGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLSTEVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDGKLRCYAAQ-DCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKDKLVKTWGLSAXXXXXXXXXXXXXXXXXXXGIVMWPVSVLMGHENSVECVAVRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMYDVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEW------HQADVSRVFTSSWDHSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRSSSTDNGVEGTSATPGKRVLAGCGSWISGVAWHP--RRENVLAALTHDGLLRVWDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSFEI 503
            +VR++F+T+D +IRV E P AVP  LNRRGLS+V+NHLL      +                 +DF+I+   LR SLDK+L+  G+S E  + +EY   L  P +   S   D WV ++ +     +  +VV G YDG LR Y AQ DC  SV    +AH G +KAV+     + +     ++ ++GKD+L + W  +                       + P++ L GH NSV+ V +    ++V+TG W   +  W+         TP  S    +++K KK         ++A AV      L    VL  H+  ++G+ +      H  DV  V ++  D +++ WDL  Q C Q L  +R V+ L+ +A  L                       +        +R       W+S V WHP    E++  + ++DG  +VWD R+T PLHT++AHEGK L     WR    EG A+   TGG D  +  F +
Sbjct:   48 QVRVKFVTKDASIRVTETPFAVPTRLNRRGLSQVVNHLLATGDSPR----------------PFDFLIDGLFLRSSLDKYLQTHGVSEEALLTLEYVEALPEPQKQNGSDHPD-WVSAVASL----DDELVVTGCYDGVLRVYDAQGDCKASV----KAHQGAIKAVSVASSKSGE----FIIASSGKDQLAQLWRYTIKLSK------------------LSPMAALTGHLNSVDAVQMHALGKRVVTGSWDNTVRVWQ---------TPEESGEQRSAKKHKKTE-------DDAGAVS--FQQLEAEIVLVGHTSYVTGVAFRPKTSEHDEDV--VVSAGSDRNVRLWDLVTQSCSQALVGNRAVSDLSVNANGLXXXXXXXXXXXXXXXXXXXXXXSIV-------QRTFRSHKEWVSSVDWHPDSNNEHLFVSGSYDGTAKVWDARSTIPLHTVSAHEGKLLD--LSWR-NQNEGVAF--VTGGDDKKLNFFSV 467          
The following BLAST results are available for this feature:
BLAST of NO23G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22956.12.100e-14755.73putative microtubule-associated protein [Nannochlo... [more]
GAY02178.14.000e-5830.83Hypothetical protein PINS_010012 [Pythium insidios... [more]
CBN79371.17.100e-5530.93conserved unknown protein [Ectocarpus siliculosus][more]
XP_009533383.11.500e-5231.80hypothetical protein PHYSODRAFT_563571 [Phytophtho... [more]
XP_002903027.12.800e-5131.59conserved hypothetical protein [Phytophthora infes... [more]
PNW70201.13.600e-5130.82hypothetical protein CHLRE_17g710100v5 [Chlamydomo... [more]
A8IR43.21.100e-5031.21RecName: Full=Ribosome biogenesis protein WDR12 ho... [more]
EJK47630.17.600e-4928.60hypothetical protein THAOC_33634 [Thalassiosira oc... [more]
XP_008898284.14.200e-4730.26hypothetical protein PPTG_06147 [Phytophthora para... [more]
KUF79381.14.200e-4730.26Ribosome biogenesis protein WDR12 [Phytophthora ni... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006321NSK006321Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00740.1NO23G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601964gene_8423Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g13gene7488Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00740.1NO23G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00740 ID=NO23G00740|Name=NO23G00740|organism=Nannochloropsis oceanica|type=gene|length=2293bp
AAAAAAGACGCACAACAGGCAAACTACTCCGGCATCGTAATCACCTCTCA
CAAGGAGAAATATCCTGGGGCTCCTAGACGGAAGGTATGCGTACTAAGCG
TGACTCGCTGCGCGAGGCAGTGCATCGTGGCCAGGAAATGGGCAAAATTG
GTTTGGATGTTTTGTCTGGGCTGTCTGTTTGTGGATGTGGTGCATCGAGT
TTATTTGTATTTCATCCCACTTGAAAGGTCCTTTCTGGTCTGGCCACCAC
AACACTGTGCCATTCGCTCCATACTCATGTATGCGTGCAAGGTTGGCATG
CTTTTCTGTCACCCTGTGATGTGCACCCTTCTCTTCTTCGTCCCCTTTCT
CTGCTGCAAATCGCTTTCTTCCACTCTTGCCCCCATTCAGAACCCAGACG
ACCCAATCAGTCCCCCTCGATTACCTCAATGTGGGAGTGCCTGATAGTTT
GACGTCGGATAGAGAAAGTGGGACGATAGCCTAGTGATGCGTAGAGACAT
CACCGCAATTACTTCTAGCACCGTCTCGAAATTTTTGGTTATTATAGTAT
GTGATATTCATTTCGTTGTCCTGTCCCTCTTTCCAGCTCTTCAATTAGGC
ATCTTGCAAAAATGACCGTAGAAATGTGCTGACATACAATTACGCTTGAA
CTTGACTCTATCACCCTTTTTCGGGGGCGTTTGCTACCTTTCAGGCAAAG
GAGGATGAACGAAACCAGTGGCAGCACCGCCGCCGATGTCCGCGTGCGTC
TCCGCTTCATCACCCGCGACCCCACCATCCGTGTCAACGAGGTGCCCTTG
GCCGTGCCGGTCGCTCTCAATCGCCGCGGGCTTTCCGAAGTTATAAACCA
CTTGCTTGGGATAGAGGGTGGGACCAAAGGATCAGCAGAGGAGGAGGAAA
AAGATGGCAACACAACGAATGCAAGTGGATACGACTTTGTGATAGAGAAC
CAGCTGTTGCGCTGCTCCCTGGACAAGTTTTTGCGGGCCACGGGGCTGTC
GACAGAGGTGACAATAAATGTGGAGTACTACCGAACGCTGCAGGCGCCGA
TTGAGGGCACTCGCAGCAAGCCCGAGGATGCCTGGGTGGGTAGTCTAGTG
GCTTGCCAGGGAGGCAGGGAGGGAGGTGTAGTGGTGGCAGGAGGGTATGA
CGGGAAGTTGCGGTGTTACGCCGCGCAGGATTGCAGCCAGAGTGTGGGGG
AGTGGTCCCAAGCTCACACTGGGCCGGTAAAGGCCGTAGCAGCTTTTCAT
TTAGATACAGACGATGGGGGAAAGGGCAGCGTGGTGGTGACAGCTGGAAA
GGACAAGCTAGTCAAGACCTGGGGGCTGTCGGCAGCGGCGGCGGGAACCA
GCAACCGCAAGAAGAAGAGTACGGAAATCGCAGCGGCCGCAGGGATAGTG
ATGTGGCCTGTGAGCGTTTTAATGGGCCACGAGAACAGCGTAGAGTGCGT
GGCGGTGCGGGGAAAGCAGCAGCAGGTGCTCACGGGTGATTGGAGCGGGA
TGATGTGCTTCTGGAAGCTTGAGGGAGGGGGCGAAACGTTTTCTACCCCT
GCCTTCTCTTCTTCTACAATCACTTCTCAAAAAAGGAAGAAACGCAGAAT
GTATGACGTTCAGGTCGGGGAGGAGGCGGCAGCAGTACAAGCAGTCGCCA
GCACCCTGACGCCCGTGTCTGTTTTGAAGGCCCACAGCCAGTGCATGAGC
GGCATTGAGTGGCACCAGGCCGATGTGTCCAGGGTCTTCACCTCCTCCTG
GGATCACTCCATCAAGTCCTGGGATCTGGAGCGACAAGACTGCGTGCAGA
CACTCAACAGCAGCAGGGTTGTTACGTCGCTTGCCGCTTCGGCCGGTAGT
CTTGTGGCGGCGGGCCACCCCGACGGACGCTTGCGGGTGTGGGATCTCCG
TTCTTCCTCAACAGACAACGGAGTGGAAGGGACATCGGCCACGCCGGGAA
AGCGCGTGCTGGCTGGTTGTGGTTCGTGGATATCGGGGGTTGCCTGGCAT
CCGCGTCGAGAGAATGTGCTTGCCGCGCTTACCCACGACGGGCTTTTGCG
CGTGTGGGACTTGAGGGCGACCAAGCCGCTGCACACACTGACGGCGCACG
AAGGGAAGGCTTTGGCTTCATGTTTTGGGTGGAGGACTGGCGGGGAGGAG
GGGGCGGCATGGCCTTTGTTTACGGGAGGGGCAGACGGCGTAGTGCGGAG
CTTCGAGATATAAAAATATCGACGGAGGAAGTGTATGACCCAAGCAAAAG
TAAAAAGTTTAGAGGGTCGTCTGCCAGAAAATCAATGCGCCAT
back to top

protein sequence of NO23G00740.1

>NO23G00740.1-protein ID=NO23G00740.1-protein|Name=NO23G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MNETSGSTAADVRVRLRFITRDPTIRVNEVPLAVPVALNRRGLSEVINHL
LGIEGGTKGSAEEEEKDGNTTNASGYDFVIENQLLRCSLDKFLRATGLST
EVTINVEYYRTLQAPIEGTRSKPEDAWVGSLVACQGGREGGVVVAGGYDG
KLRCYAAQDCSQSVGEWSQAHTGPVKAVAAFHLDTDDGGKGSVVVTAGKD
KLVKTWGLSAAAAGTSNRKKKSTEIAAAAGIVMWPVSVLMGHENSVECVA
VRGKQQQVLTGDWSGMMCFWKLEGGGETFSTPAFSSSTITSQKRKKRRMY
DVQVGEEAAAVQAVASTLTPVSVLKAHSQCMSGIEWHQADVSRVFTSSWD
HSIKSWDLERQDCVQTLNSSRVVTSLAASAGSLVAAGHPDGRLRVWDLRS
SSTDNGVEGTSATPGKRVLAGCGSWISGVAWHPRRENVLAALTHDGLLRV
WDLRATKPLHTLTAHEGKALASCFGWRTGGEEGAAWPLFTGGADGVVRSF
EI*
back to top
Synonyms
Publications