NO23G00670.1, NO23G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00670.1
Unique NameNO23G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length525
Alignment locationchr23:261651..262175 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:261651..262175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00670.1 vs.
Match: EWM22969.1 (Autophagy-related protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 141.0 bits (354), Expect = 3.600e-30
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 0 
Query:    1 MEHQLPSILHALRQSLVQLANDDLLTIMQEAQTSVGGLKEGQVRFGVLGEEVQGAVGEIASLASFYSQFLKAYGRLRPEVARRRRGLSEMEQVVEGMEERLRRRQEEEERERARFWEECGRFLPQSLCPLIQEPAETFTVVPRVKDLLGRMPMLGEEIGREAGKDGREESGGGR 175
            ME ++P++LHALR++L +L   ++    +E+   V GL+E Q R   L  E Q +  E+ SLA+FYS+F  AY +LRPE+ RRRR L E  +VV+ +E  LR R+EEE   R RFWE  GR+LPQSLCP+++EPAE+F VVP V++   R+ +L          + REE GGGR
Sbjct:  282 MEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLPQSLCPVVREPAESFRVVPSVEEARRRLSVL----------EAREEEGGGR 445
The following BLAST results are available for this feature:
BLAST of NO23G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22969.13.600e-3046.55Autophagy-related protein 17 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00670NO23G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00670.1NO23G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00670.1.cds1NO23G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00670.1 ID=NO23G00670.1|Name=NO23G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=525bp
ATGGAACATCAGCTGCCCTCCATCCTTCACGCCCTCCGCCAGTCCCTCGT
CCAACTCGCAAACGACGATCTCCTCACCATCATGCAAGAAGCTCAGACGT
CGGTGGGAGGGCTCAAGGAAGGGCAGGTGCGTTTCGGGGTGCTAGGGGAG
GAGGTCCAGGGCGCCGTTGGGGAAATAGCGAGCCTGGCGTCGTTCTACTC
CCAGTTTTTGAAGGCCTACGGGAGACTGAGGCCGGAGGTCGCCCGGCGCC
GGAGAGGGTTAAGCGAAATGGAGCAAGTGGTGGAAGGGATGGAAGAGAGA
TTGAGACGCAGGCAGGAGGAGGAGGAGAGGGAGAGAGCGAGGTTTTGGGA
GGAGTGTGGAAGGTTCTTGCCCCAGTCCCTGTGTCCGCTGATCCAGGAGC
CCGCTGAGACATTCACTGTCGTCCCGAGGGTCAAAGACTTGCTAGGAAGG
ATGCCCATGCTGGGGGAGGAGATCGGGAGGGAGGCGGGAAAGGACGGGAG
GGAAGAAAGCGGAGGGGGACGTTGA
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protein sequence of NO23G00670.1

>NO23G00670.1-protein ID=NO23G00670.1-protein|Name=NO23G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEHQLPSILHALRQSLVQLANDDLLTIMQEAQTSVGGLKEGQVRFGVLGE
EVQGAVGEIASLASFYSQFLKAYGRLRPEVARRRRGLSEMEQVVEGMEER
LRRRQEEEERERARFWEECGRFLPQSLCPLIQEPAETFTVVPRVKDLLGR
MPMLGEEIGREAGKDGREESGGGR*
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mRNA from alignment at chr23:261651..262175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00670.1 ID=NO23G00670.1|Name=NO23G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=525bp|location=Sequence derived from alignment at chr23:261651..262175+ (Nannochloropsis oceanica)
ATGGAACATCAGCTGCCCTCCATCCTTCACGCCCTCCGCCAGTCCCTCGT
CCAACTCGCAAACGACGATCTCCTCACCATCATGCAAGAAGCTCAGACGT
CGGTGGGAGGGCTCAAGGAAGGGCAGGTGCGTTTCGGGGTGCTAGGGGAG
GAGGTCCAGGGCGCCGTTGGGGAAATAGCGAGCCTGGCGTCGTTCTACTC
CCAGTTTTTGAAGGCCTACGGGAGACTGAGGCCGGAGGTCGCCCGGCGCC
GGAGAGGGTTAAGCGAAATGGAGCAAGTGGTGGAAGGGATGGAAGAGAGA
TTGAGACGCAGGCAGGAGGAGGAGGAGAGGGAGAGAGCGAGGTTTTGGGA
GGAGTGTGGAAGGTTCTTGCCCCAGTCCCTGTGTCCGCTGATCCAGGAGC
CCGCTGAGACATTCACTGTCGTCCCGAGGGTCAAAGACTTGCTAGGAAGG
ATGCCCATGCTGGGGGAGGAGATCGGGAGGGAGGCGGGAAAGGACGGGAG
GGAAGAAAGCGGAGGGGGACGTTGA
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Coding sequence (CDS) from alignment at chr23:261651..262175+

>NO23G00670.1 ID=NO23G00670.1|Name=NO23G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr23:261651..262175+ (Nannochloropsis oceanica)
ATGGAACATCAGCTGCCCTCCATCCTTCACGCCCTCCGCCAGTCCCTCGT
CCAACTCGCAAACGACGATCTCCTCACCATCATGCAAGAAGCTCAGACGT
CGGTGGGAGGGCTCAAGGAAGGGCAGGTGCGTTTCGGGGTGCTAGGGGAG
GAGGTCCAGGGCGCCGTTGGGGAAATAGCGAGCCTGGCGTCGTTCTACTC
CCAGTTTTTGAAGGCCTACGGGAGACTGAGGCCGGAGGTCGCCCGGCGCC
GGAGAGGGTTAAGCGAAATGGAGCAAGTGGTGGAAGGGATGGAAGAGAGA
TTGAGACGCAGGCAGGAGGAGGAGGAGAGGGAGAGAGCGAGGTTTTGGGA
GGAGTGTGGAAGGTTCTTGCCCCAGTCCCTGTGTCCGCTGATCCAGGAGC
CCGCTGAGACATTCACTGTCGTCCCGAGGGTCAAAGACTTGCTAGGAAGG
ATGCCCATGCTGGGGGAGGAGATCGGGAGGGAGGCGGGAAAGGACGGGAG
GGAAGAAAGCGGAGGGGGACGTTGA
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Synonyms
Publications