NO23G00670, NO23G00670 (gene) Nannochloropsis oceanica

Overview
NameNO23G00670
Unique NameNO23G00670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length525
Alignment locationchr23:261651..262175 +

Link to JBrowse

Properties
Property NameValue
DescriptionAutophagy-related protein 17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:261651..262175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007240Autophagy-rel_prot_17
Homology
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BLAST of NO23G00670 vs. NCBI_GenBank
Match: EWM22969.1 (Autophagy-related protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 133.3 bits (334), Expect = 7.500e-28
Identity = 75/174 (43.10%), Postives = 106/174 (60.92%), Query Frame = 0 
Query:    1 MEHQLPSILHALRQSLVQLANDDLLTIMQEAQTSVGGLKEGQVRFGVLGEEVQGAVGEIASLASFYSQFLKAYGRLRPEVARRRRGLSEMEQVVEGMEERLXXXXXXXXXXXARFWEECGRFLPQSLCPLIQEPAETFTVVPRVKDLLGRMPMLGEEIGREAGKDGREESGGGR 175
            ME ++P++LHALR++L +L   ++    +E+   V GL+E Q R   L  E Q +  E+ SLA+FYS+F  AY +LRPE+ RRRR L E  +VV+ +E  L            RFWE  GR+LPQSLCP+++EPAE+F VVP V++   R+ +L          + REE GGGR
Sbjct:  282 MEEEVPALLHALRRALRELVAGEMAEAARESHGLVEGLEEDQARLTSLRAEAQSSAREVESLAAFYSRFALAYAQLRPELERRRRVLRETAEVVKEVEAGLRSREEEEAAARERFWEAHGRYLPQSLCPVVREPAESFRVVPSVEEARRRLSVL----------EAREEEGGGR 445
The following BLAST results are available for this feature:
BLAST of NO23G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22969.17.500e-2843.10Autophagy-related protein 17 [Nannochloropsis gadi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00670.1NO23G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00670.1NO23G00670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00670 ID=NO23G00670|Name=NO23G00670|organism=Nannochloropsis oceanica|type=gene|length=525bp
ATGGAACATCAGCTGCCCTCCATCCTTCACGCCCTCCGCCAGTCCCTCGT
CCAACTCGCAAACGACGATCTCCTCACCATCATGCAAGAAGCTCAGACGT
CGGTGGGAGGGCTCAAGGAAGGGCAGGTGCGTTTCGGGGTGCTAGGGGAG
GAGGTCCAGGGCGCCGTTGGGGAAATAGCGAGCCTGGCGTCGTTCTACTC
CCAGTTTTTGAAGGCCTACGGGAGACTGAGGCCGGAGGTCGCCCGGCGCC
GGAGAGGGTTAAGCGAAATGGAGCAAGTGGTGGAAGGGATGGAAGAGAGA
TTGAGACGCAGGCAGGAGGAGGAGGAGAGGGAGAGAGCGAGGTTTTGGGA
GGAGTGTGGAAGGTTCTTGCCCCAGTCCCTGTGTCCGCTGATCCAGGAGC
CCGCTGAGACATTCACTGTCGTCCCGAGGGTCAAAGACTTGCTAGGAAGG
ATGCCCATGCTGGGGGAGGAGATCGGGAGGGAGGCGGGAAAGGACGGGAG
GGAAGAAAGCGGAGGGGGACGTTGA
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protein sequence of NO23G00670.1

>NO23G00670.1-protein ID=NO23G00670.1-protein|Name=NO23G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEHQLPSILHALRQSLVQLANDDLLTIMQEAQTSVGGLKEGQVRFGVLGE
EVQGAVGEIASLASFYSQFLKAYGRLRPEVARRRRGLSEMEQVVEGMEER
LRRRQEEEERERARFWEECGRFLPQSLCPLIQEPAETFTVVPRVKDLLGR
MPMLGEEIGREAGKDGREESGGGR*
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Synonyms
Publications