NO23G00550.1, NO23G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00550.1
Unique NameNO23G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1092
Alignment locationchr23:233284..234981 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:233284..234981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G00550.1 vs.
Match: EWM22980.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 259.6 bits (662), Expect = 1.400e-65
Identity = 181/346 (52.31%), Postives = 233/346 (67.34%), Query Frame = 0 
Query:    1 MSSFQRKGHPSSSSSLPFILGDRYVYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGAVETNGTDSPLFTHKVVVTDCGAWEERGREGGRDKNKKKKEKNRKKMKKKRKREE-SDSEESSSSSGSSSSSSSSSSEDEEEGERRSKKRKAEKKREEKEKKREKKEKKRREKKENKKREKKENEKREKKENEKREKKENEKREKKE 346
            MSSF+     +   SLP ILGD YVY DLS+GGVP+GRLVFLLYN VTP+TC NF+ALCTGEKGLS  S KKLHYKGS+FHR+IPGFMAQGGD+T  +GTGGES+YGPTFPDENFR+ H + GLLSMANAGP TNGSQFFLTF+ TPHL+G HVVFGE +H     G++ G   G S   ++           ++KRL  VET G D P+ T +VVVT CG WE  G   G ++ + KK       +KKRKRE  SD+E+    +             EEE  RR ++++ E+K ++KEK+RE++  +  EK + +K+E+K   K  K+E+ K +K+  E RE++E
Sbjct:    1 MSSFR-----NDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGE-VHREILPGQRAG--HGPSPDLKFK----------ILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKK-------RKKRKREHVSDAEDGRKEA------------SEEEEARRKRRKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEKKRRKEAREREE 309
The following BLAST results are available for this feature:
BLAST of NO23G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22980.11.400e-6552.31Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00550NO23G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00550.1NO23G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00550.1.cds1NO23G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00550.1.cds2NO23G00550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00550.1.cds3NO23G00550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00550.1 ID=NO23G00550.1|Name=NO23G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
ATGTCAAGCTTCCAGCGGAAGGGACACCCCTCTTCCTCCTCCTCTCTTCC
CTTCATTCTGGGTGATCGATACGTTTACATGGATCTCAGCATTGGCGGTG
TCCCTCAAGGCCGACTCGTCTTTCTCCTCTACAATTTTGTCACGCCCAAG
ACGTGTGCCAATTTTCAAGCTCTCTGCACAGGAGAAAAAGGACTCTCTCC
ACTCTCAGGCAAGAAGCTGCATTACAAAGGCTCCATCTTCCATCGCGTCA
TCCCCGGCTTCATGGCTCAAGGCGGCGACTTCACCAACGCCGACGGCACG
GGCGGAGAGAGCATCTACGGCCCTACCTTCCCGGACGAAAACTTCCGCAT
TCCTCACAACAAGCCGGGCCTCCTCTCCATGGCCAACGCCGGGCCTCACA
CCAACGGCAGCCAGTTCTTCCTCACGTTCAAGCCCACCCCGCACCTCAAC
GGCGTACATGTCGTCTTTGGTGAGCTCCTTCACACCCACCCACCCCTTGG
ACGGAAAGAGGGCTCCCAGAAAGGCGGCAGCTCACAGGAGAGATACAATA
AAGGGGGCCAGGGCGGGAAGAGTGTGGATGTTATAAAGAGACTCGGGGCC
GTGGAGACGAATGGCACGGACAGCCCTTTATTTACTCACAAGGTGGTGGT
GACAGATTGCGGGGCTTGGGAGGAGAGAGGGAGGGAAGGAGGAAGGGACA
AGAATAAGAAGAAGAAGGAGAAGAATAGGAAGAAGATGAAAAAGAAGAGG
AAAAGGGAGGAGAGTGATAGTGAGGAGAGTAGTAGCAGCAGTGGTAGCAG
CAGCAGCAGCAGCAGCAGCTCGTCAGAGGACGAGGAAGAGGGGGAGAGGA
GGAGCAAGAAAAGGAAGGCGGAGAAGAAGAGGGAGGAGAAGGAGAAGAAG
AGGGAAAAAAAGGAGAAGAAGAGGAGGGAGAAAAAGGAGAATAAGAAGAG
GGAGAAAAAGGAGAATGAGAAGAGGGAGAAAAAGGAGAATGAGAAGAGAG
AGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAAAAGGAGAATGAG
AAGAGAGAGAAAAAGGAGAAGCAGCAGCGCATGGGGGAATAG
back to top

protein sequence of NO23G00550.1

>NO23G00550.1-protein ID=NO23G00550.1-protein|Name=NO23G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MSSFQRKGHPSSSSSLPFILGDRYVYMDLSIGGVPQGRLVFLLYNFVTPK
TCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGT
GGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLN
GVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGA
VETNGTDSPLFTHKVVVTDCGAWEERGREGGRDKNKKKKEKNRKKMKKKR
KREESDSEESSSSSGSSSSSSSSSSEDEEEGERRSKKRKAEKKREEKEKK
REKKEKKRREKKENKKREKKENEKREKKENEKREKKENEKREKKEKKENE
KREKKEKQQRMGE*
back to top

mRNA from alignment at chr23:233284..234981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00550.1 ID=NO23G00550.1|Name=NO23G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp|location=Sequence derived from alignment at chr23:233284..234981+ (Nannochloropsis oceanica)
ATGTCAAGCTTCCAGCGGAAGGGACACCCCTCTTCCTCCTCCTCTCTTCC
CTTCATTCTGGGTGATCGATACGTTTACATGGATCTCAGCATTGGCGGTG
TCCCTCAAGGCCGACTCGTCTTTCTCCTCTACAATTTTGTCACGCCCAAG
ACGTGTGCCAATTTTCAAGCTCTCTGCACAGGAGAAAAAGGACTCTCTCC
ACTCTCAGGTAGGTACTCATTGACCAATTTATTTAAACTTTAGGTTGGGG
TGGGGTGTACCAGCGTGTGTCACTAGCTTTGACATCAGCTGTCGCCTTCG
TCAGCTCAGTATGGGAGGGAGGGAGGGAAGGAGGGAAGGAGAGGCGGAGT
GCACGAGGTATTCCAGAGACTGACTCAAACCTAAAGCTTTAAGTGAATCG
TCAAATAAGAACCTAAGTGCACTTCACAGGCTCTGTTTTCCACAGGGCCG
TTCCCGGAATTTGGGGCGCAGGAGTCTGTTCATTAAACTTTTTCAAATTT
ACTTTATTCTCCATTATATACATTTTGGATTATTAATTTTATTCATTTAT
CCACCAACTTGAACCCATTACTTGGTTTGCACAGGCAAGAAGCTGCATTA
CAAAGGCTCCATCTTCCATCGCGTCATCCCCGGCTTCATGGCTCAAGGCG
GCGACTTCACCAACGCCGACGGCACGGGCGGAGAGAGCATCTACGGGTAA
GCACAACCACACCCGTCCCTCCCTCCCTCCCTCTCTCAATTCCTCCCTCA
CTCTAGGTTAACAAGAGCATTCGATACTCCCACAGTAAAGCTTACCTCCT
CCCAAAGGCCAACGCCGGCCTCTATCCCCATGGCTTCCACTTCTTCCTCA
CATACCCTCCCCCCCTCCCCCCTCCCTCCCTCCCTCCCCCCCTCTCTCCC
TCCTACCCGCCCTCCCTTCTTACAAGCCCTACCTTCCCGGACGAAAACTT
CCGCATTCCTCACAACAAGCCGGGCCTCCTCTCCATGGCCAACGCCGGGC
CTCACACCAACGGCAGCCAGTTCTTCCTCACGTTCAAGCCCACCCCGCAC
CTCAACGGCGTACATGTCGTCTTTGGTGAGCTCCTTCACACCCACCCACC
CCTTGGACGGAAAGAGGGCTCCCAGAAAGGCGGCAGCTCACAGGAGAGAT
ACAATAAAGGGGGCCAGGGCGGGAAGAGTGTGGATGTTATAAAGAGACTC
GGGGCCGTGGAGACGAATGGCACGGACAGCCCTTTATTTACTCACAAGGT
GGTGGTGACAGATTGCGGGGCTTGGGAGGAGAGAGGGAGGGAAGGAGGAA
GGGACAAGAATAAGAAGAAGAAGGAGAAGAATAGGAAGAAGATGAAAAAG
AAGAGGAAAAGGGAGGAGAGTGATAGTGAGGAGAGTAGTAGCAGCAGTGG
TAGCAGCAGCAGCAGCAGCAGCAGCTCGTCAGAGGACGAGGAAGAGGGGG
AGAGGAGGAGCAAGAAAAGGAAGGCGGAGAAGAAGAGGGAGGAGAAGGAG
AAGAAGAGGGAAAAAAAGGAGAAGAAGAGGAGGGAGAAAAAGGAGAATAA
GAAGAGGGAGAAAAAGGAGAATGAGAAGAGGGAGAAAAAGGAGAATGAGA
AGAGAGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAAAAGGAG
AATGAGAAGAGAGAGAAAAAGGAGAAGCAGCAGCGCATGGGGGAATAG
back to top

Coding sequence (CDS) from alignment at chr23:233284..234981+

>NO23G00550.1 ID=NO23G00550.1|Name=NO23G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr23:233284..234981+ (Nannochloropsis oceanica)
ATGTCAAGCTTCCAGCGGAAGGGACACCCCTCTTCCTCCTCCTCTCTTCC
CTTCATTCTGGGTGATCGATACGTTTACATGGATCTCAGCATTGGCGGTG
TCCCTCAAGGCCGACTCGTCTTTCTCCTCTACAATTTTGTCACGCCCAAG
ACGTGTGCCAATTTTCAAGCTCTCTGCACAGGAGAAAAAGGACTCTCTCC
ACTCTCAGGCAAGAAGCTGCATTACAAAGGCTCCATCTTCCATCGCGTCA
TCCCCGGCTTCATGGCTCAAGGCGGCGACTTCACCAACGCCGACGGCACG
GGCGGAGAGAGCATCTACGGCCCTACCTTCCCGGACGAAAACTTCCGCAT
TCCTCACAACAAGCCGGGCCTCCTCTCCATGGCCAACGCCGGGCCTCACA
CCAACGGCAGCCAGTTCTTCCTCACGTTCAAGCCCACCCCGCACCTCAAC
GGCGTACATGTCGTCTTTGGTGAGCTCCTTCACACCCACCCACCCCTTGG
ACGGAAAGAGGGCTCCCAGAAAGGCGGCAGCTCACAGGAGAGATACAATA
AAGGGGGCCAGGGCGGGAAGAGTGTGGATGTTATAAAGAGACTCGGGGCC
GTGGAGACGAATGGCACGGACAGCCCTTTATTTACTCACAAGGTGGTGGT
GACAGATTGCGGGGCTTGGGAGGAGAGAGGGAGGGAAGGAGGAAGGGACA
AGAATAAGAAGAAGAAGGAGAAGAATAGGAAGAAGATGAAAAAGAAGAGG
AAAAGGGAGGAGAGTGATAGTGAGGAGAGTAGTAGCAGCAGTGGTAGCAG
CAGCAGCAGCAGCAGCAGCTCGTCAGAGGACGAGGAAGAGGGGGAGAGGA
GGAGCAAGAAAAGGAAGGCGGAGAAGAAGAGGGAGGAGAAGGAGAAGAAG
AGGGAAAAAAAGGAGAAGAAGAGGAGGGAGAAAAAGGAGAATAAGAAGAG
GGAGAAAAAGGAGAATGAGAAGAGGGAGAAAAAGGAGAATGAGAAGAGAG
AGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAAAAGGAGAATGAG
AAGAGAGAGAAAAAGGAGAAGCAGCAGCGCATGGGGGAATAG
back to top
Synonyms
Publications