NO23G00550, NO23G00550 (gene) Nannochloropsis oceanica

Overview
NameNO23G00550
Unique NameNO23G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1698
Alignment locationchr23:233284..234981 +

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Properties
Property NameValue
DescriptionCyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:233284..234981 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of NO23G00550 vs. NCBI_GenBank
Match: EWM22980.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 286.6 bits (732), Expect = 1.100e-73
Identity = 143/227 (63.00%), Postives = 167/227 (73.57%), Query Frame = 0
Query:    1 MSSFQRKGHPSSSSSLPFILGDRYVYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGAVETNGTDSPLFTHKVVVTDCGAWEERG 228
            MSSF+     +   SLP ILGD YVY DLS+GGVP+GRLVFLLYN VTP+TC NF+ALCTGEKGLS  S KKLHYKGS+FHR+IPGFMAQGGD+T  +GTGGES+YGPTFPDENFR+ H + GLLSMANAGP TNGSQFFLTF+ TPHL+G HVVFGE +H     G++ G   G S   ++           ++KRL  VET G D P+ T +VVVT CG WE  G
Sbjct:    1 MSSFR-----NDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGE-VHREILPGQRAG--HGPSPDLKFK----------ILKRLERVETTGADLPVLTERVVVTGCGEWERGG 209          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: ERN01482.1 (hypothetical protein AMTR_s00002p00269760 [Amborella trichopoda])

HSP 1 Score: 216.9 bits (551), Expect = 1.100e-52
Identity = 108/206 (52.43%), Postives = 136/206 (66.02%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGAVETNGTDSPLFTHKVVVTDCGAWEERGREG 231
            V++D+SIGG P G++VF L++ V PKT  NF+ALCTGEKG+  ++GK LHYKGSIFHR+I GFMAQGGDF+  DGTGGESIYG  F DENF++ H+ PG+LSMANAGP TNGSQFF+TFK T HL+G HVVFG+L+                             + +DV+K+   +E  GTD    TH V + DCG + E    G
Sbjct:    9 VFLDVSIGGDPAGKMVFELFSDVVPKTAENFRALCTGEKGIGQVTGKPLHYKGSIFHRIIKGFMAQGGDFSRKDGTGGESIYGGKFVDENFKLHHDGPGVLSMANAGPDTNGSQFFITFKSTGHLDGKHVVFGKLV-----------------------------EGMDVLKK---IEQVGTDQGRPTHNVKIVDCGEFIEAKAHG 182          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: XP_006838913.2 (peptidyl-prolyl cis-trans isomerase CYP63 [Amborella trichopoda])

HSP 1 Score: 216.9 bits (551), Expect = 1.100e-52
Identity = 108/206 (52.43%), Postives = 136/206 (66.02%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGAVETNGTDSPLFTHKVVVTDCGAWEERGREG 231
            V++D+SIGG P G++VF L++ V PKT  NF+ALCTGEKG+  ++GK LHYKGSIFHR+I GFMAQGGDF+  DGTGGESIYG  F DENF++ H+ PG+LSMANAGP TNGSQFF+TFK T HL+G HVVFG+L+                             + +DV+K+   +E  GTD    TH V + DCG + E    G
Sbjct:   14 VFLDVSIGGDPAGKMVFELFSDVVPKTAENFRALCTGEKGIGQVTGKPLHYKGSIFHRIIKGFMAQGGDFSRKDGTGGESIYGGKFVDENFKLHHDGPGVLSMANAGPDTNGSQFFITFKSTGHLDGKHVVFGKLV-----------------------------EGMDVLKK---IEQVGTDQGRPTHNVKIVDCGEFIEAKAHG 187          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: GAQ86678.1 (cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens])

HSP 1 Score: 209.5 bits (532), Expect = 1.700e-50
Identity = 103/201 (51.24%), Postives = 131/201 (65.17%), Query Frame = 0
Query:   21 GDRYVYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGAVETNGTDSPLFTHKVVVTDCG 222
            G+ +V+ D+SIG    GR+V  LY  V P+T  NF+ALCTGEKGL   +GK L YKGSIFHR+IPGFM QGGDF+N +GTGGESIYG  F DENF + HN PG+LSMANAGP+TNGSQFF+ FK TPHL+G HVVFG+++                             + +D++KR+  V T+  D P+  + V + DCG
Sbjct:    5 GNPHVFFDVSIGTQNAGRIVIELYADVVPRTAENFRALCTGEKGLGKTTGKALTYKGSIFHRIIPGFMMQGGDFSNKNGTGGESIYGAKFADENFTLSHNGPGVLSMANAGPNTNGSQFFICFKKTPHLDGKHVVFGKVV-----------------------------EGLDIVKRIEEVPTDAKDRPM--NPVTIKDCG 174          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: SGZ49629.1 (CIC11C00000005016 [[Candida] intermedia])

HSP 1 Score: 209.1 bits (531), Expect = 2.200e-50
Identity = 101/155 (65.16%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQ 180
            V+ DLS GGVP+GR+VF LYN V PKT  NF+ALCTGEKG S  SG KLHYKGS FHRVI  FM QGGDFT+  G GGESIYG  F DENF++ H+KP LLSMANAGP TNGSQFF+T  PTPHLNG HVVFGE++     + + E  +KG + +
Sbjct:    4 VFFDLSEGGVPKGRVVFQLYNDVVPKTTENFRALCTGEKGESAKSGAKLHYKGSTFHRVIKDFMCQGGDFTHGTGVGGESIYGEKFEDENFKLNHDKPFLLSMANAGPGTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQMERCEKGANDK 158          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: SGZ53294.1 (CIC11C00000005625 [[Candida] intermedia])

HSP 1 Score: 208.8 bits (530), Expect = 2.900e-50
Identity = 101/155 (65.16%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQ 180
            V+ DLS GGVP+GR+VF LYN V PKT  NF+ALCTGEKG S  SG KLHYKGS FHRVI  FM QGGDFT+  G GGESIYG  F DENF++ H+KP LLSMANAGP TNGSQFF+T  PTPHLNG HVVFGE++     + + E  +KG + +
Sbjct:    4 VFFDLSEGGVPKGRVVFQLYNDVVPKTTENFRALCTGEKGESAKSGAKLHYKGSTFHRVIKDFMCQGGDFTHGTGVGGESIYGEKFEDENFKLNHDKPFLLSMANAGPGTNGSQFFITTVPTPHLNGKHVVFGEVVQGKSIVRQMERCEKGANDK 158          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: XP_013753092.1 (peptidyl-prolyl cis-trans isomerase D [Thecamonas trahens ATCC 50062] >KNC55269.1 peptidyl-prolyl cis-trans isomerase D [Thecamonas trahens ATCC 50062])

HSP 1 Score: 208.4 bits (529), Expect = 3.800e-50
Identity = 110/200 (55.00%), Postives = 128/200 (64.00%), Query Frame = 0
Query:   22 DRYVYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGAVETNGTDSPLFTHKVVVTDCG 222
            D   + D+SIGGVP GR+VF LY  +TPKT  NF+ALCTGEKG+   SGK L YKGS FHRVI  FM QGGDFTN +GTGGESIYG  F DENF + H KPGLLSMANAGP TNGSQFF+T  PTPHL+G HVVFGE+L                             K + V++ + A+ET   D P+    VV+ DCG
Sbjct:    8 DVRTFFDISIGGVPAGRIVFKLYTDITPKTSENFRALCTGEKGVGE-SGKALSYKGSTFHRVIEDFMIQGGDFTNHNGTGGESIYGAKFEDENFEVMHTKPGLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVL-----------------------------KGMGVVREIEALET-ADDRPI--DAVVIEDCG 174          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: XP_002618818.1 (hypothetical protein CLUG_02277 [Clavispora lusitaniae ATCC 42720] >EEQ38154.1 hypothetical protein CLUG_02277 [Clavispora lusitaniae ATCC 42720])

HSP 1 Score: 207.6 bits (527), Expect = 6.500e-50
Identity = 98/155 (63.23%), Postives = 118/155 (76.13%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQ 180
            V+ D++ GG P+GR+VF LYN V PKT  NF+AL TGEKG S +SGK LHYKGSIFHRVI  FM QGGDFT+  G GGESIYG  F DENF++ H+KP LLSMANAGP+TNGSQFF+T  PTPHLNG HVVFGE++     + + E  +KG + +
Sbjct:    4 VFFDITAGGKPKGRIVFKLYNDVVPKTAENFRALATGEKGNSSVSGKPLHYKGSIFHRVIKDFMCQGGDFTHGTGVGGESIYGEKFEDENFKLTHDKPFLLSMANAGPNTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQMERCEKGANDK 158          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: OVF10234.1 (putative peptidyl-prolyl cis-trans isomerase [Clavispora lusitaniae])

HSP 1 Score: 207.2 bits (526), Expect = 8.500e-50
Identity = 98/155 (63.23%), Postives = 118/155 (76.13%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQ 180
            V+ D++ GG P+GR+VF LYN V PKT  NF+AL TGEKG S +SGK LHYKGSIFHRVI  FM QGGDFT+  G GGESIYG  F DENF++ H+KP LLSMANAGP+TNGSQFF+T  PTPHLNG HVVFGE++     + + E  +KG + +
Sbjct:    4 VFFDITAGGKPKGRIVFKLYNDVVPKTAENFRALATGEKGNSSVSGKPLHYKGSIFHRVIKDFMCQGGDFTHGTGIGGESIYGEKFEDENFKLTHDKPFLLSMANAGPNTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQMERCEKGANDK 158          
BLAST of NO23G00550 vs. NCBI_GenBank
Match: XP_018713566.1 (hypothetical protein METBIDRAFT_9397 [Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993] >OBA23085.1 hypothetical protein METBIDRAFT_9397 [Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993])

HSP 1 Score: 206.8 bits (525), Expect = 1.100e-49
Identity = 105/184 (57.07%), Postives = 125/184 (67.93%), Query Frame = 0
Query:   25 VYMDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLNGVHVVFGELLHTHPPLGRKEGSQKGGSSQ--ERYNKGGQGGKSVDVIKRLGAVETNGT 207
            V+ DL+  G+P+GR+VF LYN V PKT  NF+ALCTGEKG S  SGK LHYKGS FHRVI  FM QGGDFT+  G GGESIYG  F DENF++ H+KP LLSMANAGP+TNGSQFF+T  PTPHLNG HVVFGE++     +   E  +KG   +  E +     G    D +    AV  +GT
Sbjct:    4 VFFDLTANGIPKGRVVFKLYNDVVPKTTENFRALCTGEKGNSAESGKPLHYKGSTFHRVIKSFMCQGGDFTHGTGIGGESIYGNKFEDENFKLTHDKPFLLSMANAGPNTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSVVRELERCEKGDGDKPTEDWVIADCGELPADYVPEASAVSDDGT 187          
The following BLAST results are available for this feature:
BLAST of NO23G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22980.11.100e-7363.00Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
ERN01482.11.100e-5252.43hypothetical protein AMTR_s00002p00269760 [Amborel... [more]
XP_006838913.21.100e-5252.43peptidyl-prolyl cis-trans isomerase CYP63 [Amborel... [more]
GAQ86678.11.700e-5051.24cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
SGZ49629.12.200e-5065.16CIC11C00000005016 [[Candida] intermedia][more]
SGZ53294.12.900e-5065.16CIC11C00000005625 [[Candida] intermedia][more]
XP_013753092.13.800e-5055.00peptidyl-prolyl cis-trans isomerase D [Thecamonas ... [more]
XP_002618818.16.500e-5063.23hypothetical protein CLUG_02277 [Clavispora lusita... [more]
OVF10234.18.500e-5063.23putative peptidyl-prolyl cis-trans isomerase [Clav... [more]
XP_018713566.11.100e-4957.07hypothetical protein METBIDRAFT_9397 [Metschnikowi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00550.1NO23G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623957gene_8399Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101053g2gene7467Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00550.1NO23G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00550 ID=NO23G00550|Name=NO23G00550|organism=Nannochloropsis oceanica|type=gene|length=1698bp
ATGTCAAGCTTCCAGCGGAAGGGACACCCCTCTTCCTCCTCCTCTCTTCC
CTTCATTCTGGGTGATCGATACGTTTACATGGATCTCAGCATTGGCGGTG
TCCCTCAAGGCCGACTCGTCTTTCTCCTCTACAATTTTGTCACGCCCAAG
ACGTGTGCCAATTTTCAAGCTCTCTGCACAGGAGAAAAAGGACTCTCTCC
ACTCTCAGgtaggtactcattgaccaatttatttaaactttaggttgggg
tggggtgtaccagcgtgtgtcactagctttgacatcagctgtcgccttcg
tcagctcagtatgggagggagggagggaaggagggaaggagaggcggagt
gcacgaggtattccagagactgactcaaacctaaagctttaagtgaatcg
tcaaataagaacctaagtgcacttcacaggctctgttttccacagggccg
ttcccggaatttggggcgcaggagtctgttcattaaactttttcaaattt
actttattctccattatatacattttggattattaattttattcatttat
ccaccaacttgaacccattacttggtttgcacagGCAAGAAGCTGCATTA
CAAAGGCTCCATCTTCCATCGCGTCATCCCCGGCTTCATGGCTCAAGGCG
GCGACTTCACCAACGCCGACGGCACGGGCGGAGAGAGCATCTACGGgtaa
gcacaaccacacccgtccctccctccctccctctctcaattcctccctca
ctctaggttaacaagagcattcgatactcccacagtaaagcttacctcct
cccaaaggccaacgccggcctctatccccatggcttccacttcttcctca
cataccctccccccctcccccctccctccctccctccccccctctctccc
tcctacccgccctcccttcttacaagCCCTACCTTCCCGGACGAAAACTT
CCGCATTCCTCACAACAAGCCGGGCCTCCTCTCCATGGCCAACGCCGGGC
CTCACACCAACGGCAGCCAGTTCTTCCTCACGTTCAAGCCCACCCCGCAC
CTCAACGGCGTACATGTCGTCTTTGGTGAGCTCCTTCACACCCACCCACC
CCTTGGACGGAAAGAGGGCTCCCAGAAAGGCGGCAGCTCACAGGAGAGAT
ACAATAAAGGGGGCCAGGGCGGGAAGAGTGTGGATGTTATAAAGAGACTC
GGGGCCGTGGAGACGAATGGCACGGACAGCCCTTTATTTACTCACAAGGT
GGTGGTGACAGATTGCGGGGCTTGGGAGGAGAGAGGGAGGGAAGGAGGAA
GGGACAAGAATAAGAAGAAGAAGGAGAAGAATAGGAAGAAGATGAAAAAG
AAGAGGAAAAGGGAGGAGAGTGATAGTGAGGAGAGTAGTAGCAGCAGTGG
TAGCAGCAGCAGCAGCAGCAGCAGCTCGTCAGAGGACGAGGAAGAGGGGG
AGAGGAGGAGCAAGAAAAGGAAGGCGGAGAAGAAGAGGGAGGAGAAGGAG
AAGAAGAGGGAAAAAAAGGAGAAGAAGAGGAGGGAGAAAAAGGAGAATAA
GAAGAGGGAGAAAAAGGAGAATGAGAAGAGGGAGAAAAAGGAGAATGAGA
AGAGAGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAAAAGGAG
AATGAGAAGAGAGAGAAAAAGGAGAAGCAGCAGCGCATGGGGGAATAG
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protein sequence of NO23G00550.1

>NO23G00550.1-protein ID=NO23G00550.1-protein|Name=NO23G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MSSFQRKGHPSSSSSLPFILGDRYVYMDLSIGGVPQGRLVFLLYNFVTPK
TCANFQALCTGEKGLSPLSGKKLHYKGSIFHRVIPGFMAQGGDFTNADGT
GGESIYGPTFPDENFRIPHNKPGLLSMANAGPHTNGSQFFLTFKPTPHLN
GVHVVFGELLHTHPPLGRKEGSQKGGSSQERYNKGGQGGKSVDVIKRLGA
VETNGTDSPLFTHKVVVTDCGAWEERGREGGRDKNKKKKEKNRKKMKKKR
KREESDSEESSSSSGSSSSSSSSSSEDEEEGERRSKKRKAEKKREEKEKK
REKKEKKRREKKENKKREKKENEKREKKENEKREKKENEKREKKEKKENE
KREKKEKQQRMGE*
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Synonyms
Publications