NO23G00470.2, NO23G00470.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00470.2
Unique NameNO23G00470.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2127
Alignment locationchr23:203508..206271 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:203508..206271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00470.2 vs.
Match: EWM22988.1 (hypothetical protein Naga_101129g2 [Nannochloropsis gaditana])

HSP 1 Score: 477.2 bits (1227), Expect = 4.400e-131
Identity = 244/319 (76.49%), Postives = 272/319 (85.27%), Query Frame = 0 
Query:   39 MHRFPRWSIFLIALLDTLSLVVMVVAGASTPPVLTVLFMQATIPFIILLSSCPPPSFSSSPFSPSITTGRGGGRKTKMFKNEHWQGGGLILLGIAVAMAPTVHAAFWHGHRDIGINTLAYVLCCLPAAFSQLVKERAIIKFSQPMNFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWNTYAMTDLSTAVTDMCLCLFSGQSIPPGRYPIDPQCRFASLATFFYIFSTLLVTFAVNGVLAYGTPLILYRTINSSVALAFVVLALYSMNKWAWITSYALNIFDFLGLFIVLAGMERYHREPEPDTEMLTHFSLSPEEGE 358
            MHRFPR SI LIALLDTLSLVVMVVAGASTPPVLTVLFMQAT+PF++LLSSCPP       F     T +   R+ K F   HWQGGGLILLGI VAMAPTVH AFWH   DIGINTLAYVLCCLPAA SQL KE+AII+F+QP+NFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGW+ Y  TDL TAV+D+CLCLF+ +SIPPGRYPI+P+CR+ASLATF YI  TLLVTFAVNGVLA GTP +LYRTIN SVALAF+ LA+YS+NKWAW++SYALN+FDF+GLF+VLAGME YH +PEPDTEMLT FSL  E+GE
Sbjct:    1 MHRFPRRSILLIALLDTLSLVVMVVAGASTPPVLTVLFMQATLPFLLLLSSCPPS------FPTCFATAKR--REQKRFHRAHWQGGGLILLGIGVAMAPTVHVAFWHRQTDIGINTLAYVLCCLPAAVSQLAKEQAIIEFAQPINFYYLNLLLGIYQFVLLLVLSPLTYRLQGLGMGWDPYGATDLGTAVSDLCLCLFTARSIPPGRYPIEPECRYASLATFLYILCTLLVTFAVNGVLASGTPQMLYRTINGSVALAFLALAVYSVNKWAWVSSYALNVFDFIGLFLVLAGMEWYHSQPEPDTEMLTQFSL--EDGE 309
The following BLAST results are available for this feature:
BLAST of NO23G00470.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22988.14.400e-13176.49hypothetical protein Naga_101129g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00470NO23G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00470.2NO23G00470.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00470.2.cds1NO23G00470.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00470.2.cds2NO23G00470.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00470.2.cds3NO23G00470.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00470.2.cds4NO23G00470.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00470.2 ID=NO23G00470.2|Name=NO23G00470.2|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp
AAATCTCGCCCTTGGAGTCCTCCTATGCGTGAGTGTTGGAAGCAAGAATG
GCTGTGAGTGTGACAGTGCACTACCAGGTAAGCTTTACAAGAAAGAGGCG
CAACCGCCAAGGCAGGAGTTCTACAACGCGAATGTGTTCGCCATTCGTGC
AGGCAGTATGGATGATTCCCCTCCGCCCCCCCCAAGTGGGAATGTACGCA
AAGCTCGCTCAAGAAGCACAAGCCAAGGACTTGCAAGAATTGTGCCCAGC
CATTGTCTCACCATTTGCCATCACAAATGCACAGGTTGGGTTCTTTCAGC
GTCTGCCTGCCCTTTCGCAAGCAAGCATTTTTAGGAGAACGCCAGCAGAA
GCATCAGGAAGAACAGGAGCTGGACCATTATTGGAGGGCAGAACGTAATG
CGTGGCGGATAAATTGAACTCAGGTCAAGAAAGCAGGACTAGGACCTGCG
CCACGGGCCTGCGGCAGCGTCAGCAGCAGCAGCAGCAGCAGCTGCAGCAG
TGCGAGAAGTAACCAACTAGCTGCAACAGAGCAGCAGCAGTGTTTTGAGT
AATACTTTAAAAACTGTTCAGGGAAAATGAGGGAATCCAAGTCTCTAGAC
CCTGGCAGCAACCGGCGGGGCAATTACGGGGGCCTCTCAATTGGGATGAC
GCCCTCCCCGCCGTCCGTGATAATCAATGAAGTGGAAATGGCGCGCCAGG
CCCGGAGAAGAAAGGTAGGTGATATGGTAACAGGCGCTGCACATTGATAC
TCCGATATAGGTAGGAATTTATTCATTACCTTTTTCCCTCCCTCCATTTC
TTTTTCCTTTCATCCATCTTGTAGAAATGGTGGTGCGGACAGTTGTCCTC
CAACTCAGCCCTAGGTGGCTTTATCTTCCTTGTCGGCCTCGCTGCAGCCG
GAGAACGAATAGCCTTCAAAGTAGCCATTGATCAAATGGAACCGTTCCGG
GTGTTTCTCGCTCTCTTTGTGAACCTCTCCTTGGTGCTGGTGTCAGGGGT
GGTGGTGCTCTACAAGAAGATGAAACAGCCCTCCGAGATTACGCCTTCCA
TGCACCGCTTTCCCCGCTGGTCCATCTTTCTCATCGCGCTTCTCGATACC
TTGTCACTCGTCGTTATGGTGGTCGCCGGCGCCTCCACTCCTCCAGTTCT
CACCGTCCTCTTCATGCAAGCCACCATTCCCTTTATCATCCTCCTCTCCT
CCTGCCCTCCTCCCTCCTTCTCTTCCTCCCCCTTTTCCCCTTCTATTACA
ACGGGGAGGGGGGGGGGGAGGAAGACCAAGATGTTCAAGAATGAGCACTG
GCAAGGAGGAGGGCTTATTTTGTTGGGGATTGCGGTGGCTATGGCCCCGA
CCGTCCACGCGGCGTTTTGGCACGGACATCGGGATATTGGCATCAACACC
CTTGCCTATGTCCTCTGCTGCCTCCCTGCCGCATTTTCCCAGTTGGTCAA
AGAGCGGGCCATCATCAAGTTCTCCCAGCCTATGAACTTTTACTACCTAA
ATTTGCTGCTAGGCATCTATCAATTTGTGTTGCTTTTGGTCTTGTCCCCA
CTCACCTACAGGCTCCAGGGCCTGGGGATGGGCTGGAATACATACGCCAT
GACTGACTTGAGCACCGCTGTGACGGATATGTGCCTGTGTCTTTTTTCCG
GTCAATCCATTCCTCCGGGTCGCTATCCCATTGACCCCCAATGCCGCTTT
GCATCCTTGGCGACATTTTTCTACATCTTTTCCACGCTTCTCGTGACCTT
TGCGGTGAACGGCGTGCTTGCCTACGGGACCCCTTTAATTTTGTACCGGA
CCATCAATTCGTCTGTTGCCTTGGCCTTTGTGGTGCTTGCGCTCTATTCC
ATGAACAAATGGGCGTGGATTACCTCGTATGCTCTCAACATATTTGATTT
CTTGGGTCTCTTCATTGTCCTCGCAGGAATGGAGCGGTACCACAGGGAGC
CGGAGCCAGATACAGAAATGTTGACGCACTTTTCGTTGTCGCCGGAAGAA
GGGGAAGAGGGCGAGGAGGAAGAGGTGTTCTAGACGAGAGAAAGACAAAA
AGTGGATGGATGTAGATAAATTTATCGATAACGTGAAAGAACACACGCAA
AGGAACTTATGAAATTGAGACAAACGA
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protein sequence of NO23G00470.2

>NO23G00470.2-protein ID=NO23G00470.2-protein|Name=NO23G00470.2|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MEPFRVFLALFVNLSLVLVSGVVVLYKKMKQPSEITPSMHRFPRWSIFLI
ALLDTLSLVVMVVAGASTPPVLTVLFMQATIPFIILLSSCPPPSFSSSPF
SPSITTGRGGGRKTKMFKNEHWQGGGLILLGIAVAMAPTVHAAFWHGHRD
IGINTLAYVLCCLPAAFSQLVKERAIIKFSQPMNFYYLNLLLGIYQFVLL
LVLSPLTYRLQGLGMGWNTYAMTDLSTAVTDMCLCLFSGQSIPPGRYPID
PQCRFASLATFFYIFSTLLVTFAVNGVLAYGTPLILYRTINSSVALAFVV
LALYSMNKWAWITSYALNIFDFLGLFIVLAGMERYHREPEPDTEMLTHFS
LSPEEGEEGEEEEVF*
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mRNA from alignment at chr23:203508..206271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00470.2 ID=NO23G00470.2|Name=NO23G00470.2|organism=Nannochloropsis oceanica|type=mRNA|length=2764bp|location=Sequence derived from alignment at chr23:203508..206271- (Nannochloropsis oceanica)
AAATCTCGCCCTTGGAGTCCTCCTATGCGTGAGTGTTGGAAGCAAGAATG
GCTGTGAGTGTGACAGTGCACTACCAGGTAAGCTTTACAAGAAAGAGGCG
CAACCGCCAAGGCAGGAGTTCTACAACGCGAATGTGTTCGCCATTCGTGC
AGGCAGTATGGATGATTCCCCTCCGCCCCCCCCAAGTGGGAATGTACGCA
AAGCTCGCTCAAGAAGCACAAGCCAAGGACTTGCAAGAATTGTGCCCAGC
CATTGTCTCACCATTTGCCATCACAAATGCACAGGTTGGGTTCTTTCAGC
GTCTGCCTGCCCTTTCGCAAGCAAGCATTTTTAGGAGAACGCCAGCAGAA
GCATCAGGAAGAACAGGAGCTGGACCATTATTGGAGGGCAGAACGTAATG
CGTGGCGGATAAATTGAACTCAGGTCAAGAAAGCAGGACTAGGACCTGCG
CCACGGGCCTGCGGCAGCGTCAGCAGCAGCAGCAGCAGCAGCTGCAGCAG
TGCGAGAAGTAACCAACTAGCTGCAACAGAGCAGCAGCAGTGTTTTGAGT
AATACTTTAAAAACTGTTCAGGGAAAATGAGGGAATCCAAGTCTCTAGAC
CCTGGCAGCAACCGGCGGGGCAATTACGGGGGCCTCTCAATTGGGTGAGA
AATGAGGGAGAAAGGGAGGGAAGGAGGGCGGGAGAGAGGGAGGAAGGGAT
GAGGGTATGCATGACGTAGCTAGACAATTGAGATGATGCAGATTGGAAAC
TCTCCATCCAGAGAATCGCTCATCTGCTCTCAACATCCCATTCTTGGTCT
TTGGCTTTCGTTCACATACACAACGCAGGATGACGCCCTCCCCGCCGTCC
GTGATAATCAATGAAGTGGAAATGGCGCGCCAGGCCCGGAGAAGAAAGGT
AGGTGATATGGTAACAGGCGCTGCACATTGATACTCCGATATAGGTAGGA
ATTTATTCATTACCTTTTTCCCTCCCTCCATTTCTTTTTCCTTTCATCCA
TCTTGTAGAAATGGTGGTGCGGACAGTTGTCCTCCAACTCAGCCCTAGGT
GGCTTTATCTTCCTTGTCGGCCTCGCTGCAGCCGGAGAACGAATAGCCTT
CAAAGTAGCCATTGATCAAATGGAACCGTTCCGGGTGTTTCTCGCTCTCT
TTGTGAACCTCTCCTTGGTGCTGGTGTCAGGGGTGGTGGTGCTCTACAAG
AAGATGAAACAGCCCTCCGGTAGGAGCCTCCATTTTTTTTTCCCGTCCTC
CCTCCCTCCTTCCCTCTCCTTGCTCACCGCCTTTTGCTCTTGAAAGGTCT
CGGGAGAGGGATTACGAAAACAACTCTCATCGCTCCCCCTTCCCTCCATC
CCTCCCTCCTTCCCCCCCTCCACCCCCAGAGATTACGCCTTCCATGCACC
GCTTTCCCCGCTGGTCCATCTTTCTCATCGCGCTTCTCGATACCTTGTCA
CTCGTCGTTATGGTGGTCGCCGGCGCCTCCACTCCTCCAGTTCTCACCGT
CCTCTTCATGCAAGCCACCATTCCCTTTATCATCCTCCTCTCCTCCTGCC
CTCCTCCCTCCTTCTCTTCCTCCCCCTTTTCCCCTTCTATTACAACGGGG
AGGGGGGGGGGGAGGAAGACCAAGATGTTCAAGAATGAGCACTGGCAAGG
AGGAGGGCTTATTTTGTTGGGGATTGCGGTGGCTATGGCCCCGACCGTCC
ACGCGGCGTTTTGGCACGGACATCGGGATATTGGTAACGATGGAGGGAGG
GAGCGGGAGGGCTGCTTTCCTACTGAATGAATACCTCATATCCCCTGTAA
GACATACGCAATTATAAGAATTTTCTGAATTATCAATCAATCTCAATTCC
TTTTCTCTCACTTGTAGGCATCAACACCCTTGCCTATGTCCTCTGCTGCC
TCCCTGCCGCATTTTCCCAGTTGGTCAAAGAGCGGGCCATCATCAAGTTC
TCCCAGCCTATGAACTTTTACTACCTAAATTTGCTGCTAGGCATCTATCA
ATTTGTGTTGCTTTTGGTCTTGTCCCCACTCACCTACAGGCTCCAGGTAG
GGACAGAGGGAGGGACGGTGGGAGAGAAGGGAGGGAGAAGATTGCGAGCA
AGGAGGAAATGACGTGATTTTTTTCCTTTTATTTATTATATGTGGTGTAG
TTAGCCGCTTTATCTAAGAATGACTCTCATCGAAAATCAATAATGCCCCA
TACAGGGCCTGGGGATGGGCTGGAATACATACGCCATGACTGACTTGAGC
ACCGCTGTGACGGATATGTGCCTGTGTCTTTTTTCCGGTCAATCCATTCC
TCCGGGTCGCTATCCCATTGACCCCCAATGCCGCTTTGCATCCTTGGCGA
CATTTTTCTACATCTTTTCCACGCTTCTCGTGACCTTTGCGGTGAACGGC
GTGCTTGCCTACGGGACCCCTTTAATTTTGTACCGGACCATCAATTCGTC
TGTTGCCTTGGCCTTTGTGGTGCTTGCGCTCTATTCCATGAACAAATGGG
CGTGGATTACCTCGTATGCTCTCAACATATTTGATTTCTTGGGTCTCTTC
ATTGTCCTCGCAGGAATGGAGCGGTACCACAGGGAGCCGGAGCCAGATAC
AGAAATGTTGACGCACTTTTCGTTGTCGCCGGAAGAAGGGGAAGAGGGCG
AGGAGGAAGAGGTGTTCTAGACGAGAGAAAGACAAAAAGTGGATGGATGT
AGATAAATTTATCGATAACGTGAAAGAACACACGCAAAGGAACTTATGAA
ATTGAGACAAACGA
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Coding sequence (CDS) from alignment at chr23:203508..206271-

>NO23G00470.2 ID=NO23G00470.2|Name=NO23G00470.2|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr23:203508..206271- (Nannochloropsis oceanica)
ATGGAACCGTTCCGGGTGTTTCTCGCTCTCTTTGTGAACCTCTCCTTGGT
GCTGGTGTCAGGGGTGGTGGTGCTCTACAAGAAGATGAAACAGCCCTCCG
AGATTACGCCTTCCATGCACCGCTTTCCCCGCTGGTCCATCTTTCTCATC
GCGCTTCTCGATACCTTGTCACTCGTCGTTATGGTGGTCGCCGGCGCCTC
CACTCCTCCAGTTCTCACCGTCCTCTTCATGCAAGCCACCATTCCCTTTA
TCATCCTCCTCTCCTCCTGCCCTCCTCCCTCCTTCTCTTCCTCCCCCTTT
TCCCCTTCTATTACAACGGGGAGGGGGGGGGGGAGGAAGACCAAGATGTT
CAAGAATGAGCACTGGCAAGGAGGAGGGCTTATTTTGTTGGGGATTGCGG
TGGCTATGGCCCCGACCGTCCACGCGGCGTTTTGGCACGGACATCGGGAT
ATTGGCATCAACACCCTTGCCTATGTCCTCTGCTGCCTCCCTGCCGCATT
TTCCCAGTTGGTCAAAGAGCGGGCCATCATCAAGTTCTCCCAGCCTATGA
ACTTTTACTACCTAAATTTGCTGCTAGGCATCTATCAATTTGTGTTGCTT
TTGGTCTTGTCCCCACTCACCTACAGGCTCCAGGGCCTGGGGATGGGCTG
GAATACATACGCCATGACTGACTTGAGCACCGCTGTGACGGATATGTGCC
TGTGTCTTTTTTCCGGTCAATCCATTCCTCCGGGTCGCTATCCCATTGAC
CCCCAATGCCGCTTTGCATCCTTGGCGACATTTTTCTACATCTTTTCCAC
GCTTCTCGTGACCTTTGCGGTGAACGGCGTGCTTGCCTACGGGACCCCTT
TAATTTTGTACCGGACCATCAATTCGTCTGTTGCCTTGGCCTTTGTGGTG
CTTGCGCTCTATTCCATGAACAAATGGGCGTGGATTACCTCGTATGCTCT
CAACATATTTGATTTCTTGGGTCTCTTCATTGTCCTCGCAGGAATGGAGC
GGTACCACAGGGAGCCGGAGCCAGATACAGAAATGTTGACGCACTTTTCG
TTGTCGCCGGAAGAAGGGGAAGAGGGCGAGGAGGAAGAGGTGTTCTAG
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Synonyms
Publications