NO23G00340, NO23G00340 (gene) Nannochloropsis oceanica

Overview
NameNO23G00340
Unique NameNO23G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2557
Alignment locationchr23:160594..163150 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:160594..163150 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G00340 vs. NCBI_GenBank
Match: EWM22997.1 (hypothetical protein Naga_100938g1 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 4.700e-35
Identity = 110/284 (38.73%), Postives = 137/284 (48.24%), Query Frame = 0 
Query:    6 RAHRSSLSSRAAHRQSPPTCSSTTDCNTKPNVTPTTGKNKRTSALAAIISELLGHHVYSPELLNILLTKGKATMEVQLGFPDDAANIHEDLGDGYETAGYRCMDQDTWRNRFFQRAIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAKCMKTTIGPTRIRTRCSRDLSELCVGDCTSPLCEMNPNEKKQDQLQRQRPQQPHTHRHWLEIGPGAMGTLSQLILDAHPQNTLLAVEAVASSATEVEGRMQKLYGSSRSSTGG 290
            ++ + + SS+ A   +P  CS   +    P+  P  GKNKR   LA +IS LLG HVY+ ELL I+L KG ATM+VQLGFPDD A+IH DL  GYE  GY CMDQD WRN +F+ AIA                                                   EA   K          + S +  E+       P C+ + N           P   H HRHWLEIGPGAMGTLS+L+L+AHP NTL A+EAV SSA  V  R+Q+ YG  +    G
Sbjct:   43 KSRKPTQSSKLAVPNAPLPCS---EALLNPSGFP-FGKNKRRVELARMISSLLGDHVYTHELLEIILCKGTATMDVQLGFPDDKAHIHGDLSSGYEETGYACMDQDRWRNAYFEAAIA---------------------------------------------------EASAAK----------KASAEGLEVEEKGSMRPSCQASNN----------GPGPLHGHRHWLEIGPGAMGTLSRLVLEAHPDNTLTAIEAVPSSARAVVKRLQRWYGREKRRREG 251
The following BLAST results are available for this feature:
BLAST of NO23G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22997.14.700e-3538.73hypothetical protein Naga_100938g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00340.1NO23G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100938g1gene7451Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00340.1NO23G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00340 ID=NO23G00340|Name=NO23G00340|organism=Nannochloropsis oceanica|type=gene|length=2557bp
ATAGGCACGTCACGGCTGCAGCTTTAATATGCCGCATACCTCCCGGGCTC
ATCGCTCTTCTCTGTCATCTCGTGCTGCCCACCGACAGTCGCCTCCCACC
TGCAGCAGCACTACCGATTGCAACACCAAACCCAATGTCACCCCCACCAC
CGGCAAAAACAAGCGCACCAGCGCTCTTGCTGCTATTATTAGCGAGCTTC
TTGGACATCATGTCTATTCTCCCGAGCTCCTTAATATCCTTCTGACGAAA
GGCAAGGCGACCATGGAGGTACAACTCGGCTTTCCGGATGATGCGGCCAA
TATTCATGAGGACTTGGGGGACGGCTATGAGACCGCCGGCTACCGATGCA
TGGACCAAGATACATGGCGAAATCGCTTTTTCCAACGGGCCATTGCCCAG
GCAAGTGCCGGCGGGGAGAATGGTGGGGAGAAGCGGCAGCAGCAGTCGCA
GCAGCAGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
GGGAGGAGGACAAACAAGAGATGAAGCGGCGTCGAAGACGCTCAAATCTG
GAGGCAAAATGTATGAAGACGACGATAGGACCAACGAGAATCCGAACCAG
ATGCAGTCGGGACTTAAGCGAGCTTTGTGTTGGAGACTGCACCTCGCCTC
TCTGTGAAATGAACCCTAACGAGAAGAAGCAGGATCAGCTTCAGAGACAG
CGGCCGCAGCAGCCTCATACCCACCGGCACTGGCTTGAGATTGGTCCCGG
GGCCATGGGGACGTTGTCTCAGCTTATTTTGGACGCCCACCCGCAAAACA
CCCTACTAGCTGTAGAGGCCGTGGCGTCCAGCGCCACGGAAGTAGAGGGG
AGGATGCAAAAATTGTACGGTAGCAGCAGGAGCAGTACTGGTGGTGGTAA
ACGTGCGACAAAGGAGGGAGGGAAGAAGAGAAGCAGGAGAATCGGTGATG
CGGATTGCAGCCGCAGCAACAGCCACCGTCATGGAAGCTCGGGACTTCAG
CAGCAGCAGCAGCAGCAGCATGACGGGCATGAAAATAGCATGAAAACGAT
CCTGTCTACCACTCTGTCGCTGGCGGCAAAGGCAGTTAAATGGATGGCAG
GTGCAGGAGAAACAAAAGGCAGTCCTCCTCCTCCACCTTCTCCTCCTCCT
TCTCCTCTTTCTCTTCTCCATCAACCTCCTTCTCTTTCTCCTCCTCTTCC
TCTCCTCTCACCTCCTCCTTCTCTTCCTTCTTCTCTTCCTCCTCGCCGTT
TCCTTGACCCCTTCCTTTCTTCCCCCTCGTCACCCCCTCCTCTCCGACAT
TCTACTCCTTCCTTACTCCTGCAGAAGCCAGCTCAAGTACAGCACCGACG
ACGAGGACAACAAAAACAACAACAACAGCTGCAGCAGCAGCCGCCGACAC
CACGCTTCCAAGTGATCCATGGTCTCGCGGGGCACGTCCCCCTCCCCTCC
CTCTCCTTCTCCTCCCCCTCCTCCACCCTTTCTCACCCCCTCCTTCCCTC
GTCCTCCCTCCCTCCCTCGCACCCTACGGCCCTCGTTGCGGAAATCCTGG
GCCATTTCGGTTCATCGGAAGGCTACATCTCTATCCTCCACCAATGCGCC
CGCTCCTACCCCTCCCTCCCTCCCTCCCTCACCACTGCCATCCCCTTGAC
ATTCGGTACAAGGGTCGTCCCTGTAGATTTGACGTCGCCCTCCCTCCGCC
GCTCCCTCCGTATTGCGGCCATAGGGAAAAGGCTTGTCTTTTTTGCCAAG
TTCCCTTTCGCGGACACACAGCTCTCAACTAAGCCCGGGGTCATGGAAGA
GTACAATGTTTTGGAAGAGCTCCGACGACACTTCCCGTCCTCCCTCCCTC
CCTCGTCCTCGCCCTCGCCCGTGCCCTCCCTCCCTTCCTCCTCCGTCCCC
CGTGTTTTTTCCTCCCGTTGGACTGTGGGAAAGATGGAGTCGGAAAGGGG
GAAATCTCGGCCTTTCCATGGCCTGGCTTTTTACCTGTTCTTCGGGCAGG
GAGGGAGAGAAAGAGGTGTCTCCGACGGGGTGGGAGTGTCGCTTGGGGAG
GAAGGGAGGAGAGAGGGTGGGAGGGAGGAGAGGAGGGAAGCAGGGGAGGA
GGAATGGGAGACCTCGAACGCGGATAATCCCAAGGCGTGCACGAACTGGA
TGAATGTCTTCGTGCCGGTAGGACGGGGTGGGTGGGTCGTGGAAGAAGGG
GAGGAGGTCGAGTGTGAGAGCAGGTGCTACGTAGGCGAAGCTCAGCCCTG
GTACGAAATGATTGTCACGGTGCGGAAACGGGAGGAGAGGGGGGAAGAGA
GGAAGGGGAGAGAGGGAAACAGGACGGGGAGAAAGAATGGAGGAGGAGGA
AGAGGGAAGGGAGGGAGAGAGGGCGGGAGGGAGGTGAAGTATCGCGAGAG
TGTGTATGTGCATTACTGTGACTTGGTCTGTCGGGTGGACTCTGTCAGGG
GATGGAGAAAATTCTTTGCGAGTCAAGGGAAGGAGGAGAGGGAGGGAGGG
AAGGGAGGAGGGAGGGAGGGAGGGAGGCGAGGAGGAGTCATGACGACAAG
CCTCTGA
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protein sequence of NO23G00340.1

>NO23G00340.1-protein ID=NO23G00340.1-protein|Name=NO23G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=843bp
MPHTSRAHRSSLSSRAAHRQSPPTCSSTTDCNTKPNVTPTTGKNKRTSAL
AAIISELLGHHVYSPELLNILLTKGKATMEVQLGFPDDAANIHEDLGDGY
ETAGYRCMDQDTWRNRFFQRAIAQASAGGENGGEKRQQQSQQQSQQQQQQ
QQQQQQQGEEDKQEMKRRRRRSNLEAKCMKTTIGPTRIRTRCSRDLSELC
VGDCTSPLCEMNPNEKKQDQLQRQRPQQPHTHRHWLEIGPGAMGTLSQLI
LDAHPQNTLLAVEAVASSATEVEGRMQKLYGSSRSSTGGGKRATKEGGKK
RSRRIGDADCSRSNSHRHGSSGLQQQQQQQHDGHENSMKTILSTTLSLAA
KAVKWMAGAGETKGSPPPPPSPPPSPLSLLHQPPSLSPPLPLLSPPPSLP
SSLPPRRFLDPFLSSPSSPPPLRHSTPSLLLQKPAQVQHRRRGQQKQQQQ
LQQQPPTPRFQVIHGLAGHVPLPSLSFSSPSSTLSHPLLPSSSLPPSHPT
ALVAEILGHFGSSEGYISILHQCARSYPSLPPSLTTAIPLTFGTRVVPVD
LTSPSLRRSLRIAAIGKRLVFFAKFPFADTQLSTKPGVMEEYNVLEELRR
HFPSSLPPSSSPSPVPSLPSSSVPRVFSSRWTVGKMESERGKSRPFHGLA
FYLFFGQGGRERGVSDGVGVSLGEEGRREGGREERREAGEEEWETSNADN
PKACTNWMNVFVPVGRGGWVVEEGEEVECESRCYVGEAQPWYEMIVTVRK
REERGEERKGREGNRTGRKNGGGGRGKGGREGGREVKYRESVYVHYCDLV
CRVDSVRGWRKFFASQGKEEREGGKGGGREGGRRGGVMTTSL*
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Synonyms
Publications