NO23G00200, NO23G00200 (gene) Nannochloropsis oceanica

Overview
NameNO23G00200
Unique NameNO23G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length926
Alignment locationchr23:89362..90287 +

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Properties
Property NameValue
DescriptionTransmembrane protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:89362..90287 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009305DUF962
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO23G00200 vs. NCBI_GenBank
Match: EWM23011.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 1.700e-60
Identity = 120/192 (62.50%), Postives = 149/192 (77.60%), Query Frame = 0
Query:    2 ASSKTSSL--FPSSLFLLLLIAALAISYQYLSTHHAQIEAMLGGKRARQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETVGELGNKFI 192
            A  KTS L    +  F L+L+ AL  SY YLS+HHA++++ LGG R R +E+F+ FYK +YR++H+DD NRYLHF GTT+ LA AA+EP L +AA  AVVVGLNV+ELTYM  +GA+EGAAMLL YL L+    RSL RPLL +L GY CAW+GHF +EGN+PATFTYAVFSF+GDFRMWWETVGELG + +
Sbjct:    5 AKGKTSFLGNVLTPSFYLVLLTALTTSYHYLSSHHAEVDSYLGGPRVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGELGRRML 196          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: XP_004998008.1 (hypothetical protein PTSG_11825 [Salpingoeca rosetta] >EGD79052.1 hypothetical protein PTSG_11825 [Salpingoeca rosetta])

HSP 1 Score: 103.2 bits (256), Expect = 9.200e-19
Identity = 65/177 (36.72%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   11 PSSLFLLLLIAALAISYQYLSTHHAQIEAMLGGKRA-RQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETVGEL 187
            P  L L   +A +A    +L  +   +E   G +   + Y++F  FY   Y++EH+D   R LH IGT+I L   AA P+ F++   A VV      L     NGA E A M+  + S  Y  +RS++  L+ +L GYA AWVGHF  E N+PATF Y  FS + DF M +  + ++
Sbjct:   39 PGFLSLSFCMALVAAGAYFLYQNPEGLEPWTGMRHPNKPYKTFMDFYP-YYQEEHTDKTCRLLHIIGTSIVLTIMAASPSTFVSMALAFVVAYACCGLFAFMPNGAAEAAVMVTVFFSTHYFLKRSIKLALVVMLVGYAFAWVGHFFFEQNKPATFIYPSFSLMSDFFMTFRVITQV 214          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: XP_001749482.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ85767.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 84.7 bits (208), Expect = 3.400e-13
Identity = 51/133 (38.35%), Postives = 69/133 (51.88%), Query Frame = 0
Query:   47 RQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASA-AAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRM 179
            + Y +F  FY   Y  EH D   R LH +GT++  A+   + P  F+A   A  VG     L     +G +EG  M+  +L    I   + +  L  +L GY+ AWVGHF  E NRPATF Y  FS +GD+RM
Sbjct:  103 KPYTTFTEFYT-HYASEHRDHTCRLLHIVGTSLITATVLISSPVTFVAMGLAGAVGYIACGLLAAAPSGIVEGVLMIGTFLLAHRIMTGNYKMALFVVLVGYSFAWVGHFFFEMNRPATFIYPSFSLMGDYRM 234          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: XP_018265867.1 (hypothetical protein I303_02243 [Kwoniella dejecticola CBS 10117] >OBR88025.1 hypothetical protein I303_02243 [Kwoniella dejecticola CBS 10117])

HSP 1 Score: 78.2 bits (191), Expect = 3.200e-11
Identity = 57/145 (39.31%), Postives = 77/145 (53.10%), Query Frame = 0
Query:   49 YESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAE-----PTLFLAALAAVVVGLNVFELTYMRSNGAIE--GAAMLLAYLS--LAYIPRRSLRRPLLTILCG-YACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETV 184
            ++SF +FY  +Y  EH+    R LH  GT+IALAS A       P L  +A  ++     +  L    + G I   G  ++LA  S    ++    + R LL  + G YA AW+GHF IE NRPATF Y V+S  GD +MWWE V
Sbjct:   24 FQSFQSFYP-LYLGEHAKPLTRRLHLAGTSIALASFARSTLSLVPNLLASAAKSLPASQGIHAL---HNKGFIVSLGLDVILAKWSYDTQFLELEGVGRWLLGGVVGAYAFAWIGHFFIEKNRPATFKYPVWSLRGDLKMWWEVV 164          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: XP_019047572.1 (hypothetical protein I302_04188 [Kwoniella bestiolae CBS 10118] >OCF26502.1 hypothetical protein I302_04188 [Kwoniella bestiolae CBS 10118])

HSP 1 Score: 77.4 bits (189), Expect = 5.400e-11
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = 0
Query:   49 YESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNG----------AIEGAAMLLAYLSL--AYIPRRSLRRPLL-TILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETV 184
            + SF +FY   Y  EHS    R LH +GT+IAL S A       + L+ V + L+    ++  S G             G  +LLA  S+  +++    + R LL  ++  YA AW+GHF IE NRPATF Y V+S  GD +MWWE V
Sbjct:   24 FASFQSFYP-FYLGEHSLPLTRRLHLVGTSIALTSFAR------STLSLVPIALSYAAKSFPPSGGIHALHNQGPITSLGLDVLLAKWSVDTSFLELEGVGRWLLGGVIGAYAFAWIGHFFIEKNRPATFKYPVWSLRGDLKMWWEVV 164          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: XP_019005518.1 (hypothetical protein I203_02374 [Kwoniella mangroviensis CBS 8507] >OCF59187.1 hypothetical protein L486_03689 [Kwoniella mangroviensis CBS 10435] >OCF68979.1 hypothetical protein I203_02374 [Kwoniella mangroviensis CBS 8507] >OCF76560.1 hypothetical protein I204_02257 [Kwoniella mangroviensis CBS 8886])

HSP 1 Score: 77.0 bits (188), Expect = 7.100e-11
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = 0
Query:   49 YESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIE----------GAAMLLAYLSL--AYIPRRSLRRPLLTILCG-YACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETV 184
            ++SF +FY   Y  EHS    R LH +GT+IAL S A       + L+ V + L+    +   S GA            G  ++LA  S+   ++    + R LL  + G YA AW+GHF IE NRPATF Y ++S  GD +MWWE V
Sbjct:   24 FKSFQSFYP-FYLGEHSLPLTRRLHLVGTSIALTSFAR------STLSLVPIALSYAARSLPPSGGAHALHNQGFITSLGLDVILAKWSVNTQFLELEGIGRWLLGGVVGAYAFAWIGHFFIEKNRPATFKYPIWSLRGDLKMWWEVV 164          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: WP_055450221.1 (DUF962 domain-containing protein [Thiomonas bhubaneswarensis] >CUA96261.1 Uncharacterized protein Ga0061069_10467 [Thiomonas bhubaneswarensis])

HSP 1 Score: 75.5 bits (184), Expect = 2.100e-10
Identity = 50/154 (32.47%), Postives = 71/154 (46.10%), Query Frame = 0
Query:   33 HHAQIEAM---LGGKRARQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETV 184
            HH  + A        R    ++F  FY  +Y  EH D +NR LHFIG+T+AL                    + +F L +                 +L ++P          ++CGYA AWVGHF +E NRPATF   +FS +GD+ MWW+T+
Sbjct:    8 HHQDLPAATKPANAMRLAAAKTFAEFYP-LYLAEHRDPRNRRLHFIGSTLAL--------------------ICLFFLVFTG---------------NLWWLP--------AAVVCGYAFAWVGHFFVERNRPATFKRPLFSLMGDWVMWWQTL 117          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: WP_028008102.1 (DUF962 domain-containing protein [Solimonas flava])

HSP 1 Score: 75.1 bits (183), Expect = 2.700e-10
Identity = 50/136 (36.76%), Postives = 63/136 (46.32%), Query Frame = 0
Query:   46 ARQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWE 182
            A QY++F  FY   Y  EHS+   R LHF G+++ALA            L A + GL                           Y+P        L +L GY  AWVGHF  E NRPATF +  +SF+GD+RMWWE
Sbjct:    3 AAQYKTFSDFY-AFYLTEHSNQTARRLHFTGSSLALA----------CVLFAAIKGL-------------------------WWYLP--------LALLLGYGFAWVGHFFFEKNRPATFKHPFYSFMGDWRMWWE 94          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: APR81454.1 (Hypothetical protein A7982_06803 [Minicystis rosea])

HSP 1 Score: 75.1 bits (183), Expect = 2.700e-10
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 0
Query:   47 RQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWE 182
            + +E+F+ F+   Y +EH++  NR LHF+GT++A+A+ A   T  L    A+++   VF                                        GY  AWVGHF++EGNRPATF + ++S  GDFRMWW+
Sbjct:    7 KPFETFEDFWP-FYVREHANPTNRKLHFVGTSLAMATVA---TALLTKRRALLLAAPVF----------------------------------------GYGFAWVGHFLVEGNRPATFKHPLWSLRGDFRMWWK 97          
BLAST of NO23G00200 vs. NCBI_GenBank
Match: WP_052367354.1 (DUF962 domain-containing protein [Algiphilus aromaticivorans])

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-10
Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 0
Query:   49 YESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETV 184
            +  FD FY   Y +EHS+  NR LHF+GT++ L        LF       VVG+  F+L  + +                              ++ GYA AWVGHF  E N+PATF Y   S+ GD+RMWWET+
Sbjct:    8 FRDFDEFY-AYYLEEHSNRTNRRLHFVGTSLGL-------LLF-------VVGIVTFQLWLIPA-----------------------------ALVVGYAFAWVGHFFFEQNKPATFKYPWQSYKGDWRMWWETL 98          
The following BLAST results are available for this feature:
BLAST of NO23G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23011.11.700e-6062.50transmembrane protein [Nannochloropsis gaditana][more]
XP_004998008.19.200e-1936.72hypothetical protein PTSG_11825 [Salpingoeca roset... [more]
XP_001749482.13.400e-1338.35hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_018265867.13.200e-1139.31hypothetical protein I303_02243 [Kwoniella dejecti... [more]
XP_019047572.15.400e-1137.84hypothetical protein I302_04188 [Kwoniella bestiol... [more]
XP_019005518.17.100e-1137.84hypothetical protein I203_02374 [Kwoniella mangrov... [more]
WP_055450221.12.100e-1032.47DUF962 domain-containing protein [Thiomonas bhuban... [more]
WP_028008102.12.700e-1036.76DUF962 domain-containing protein [Solimonas flava][more]
APR81454.12.700e-1033.33Hypothetical protein A7982_06803 [Minicystis rosea... [more]
WP_052367354.13.500e-1035.56DUF962 domain-containing protein [Algiphilus aroma... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00200.1NO23G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|193046gene_8357Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100687g1gene7439Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00200.1NO23G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00200 ID=NO23G00200|Name=NO23G00200|organism=Nannochloropsis oceanica|type=gene|length=926bp
ATGGCCTCCTCCAAAACCTCCTCCCTCTTTCCCTCCTCCCTCTTTCTCCT
CCTCCTTATCGCGGCCCTGGCCATATCCTACCAGTACTTATCCACTCACC
ACGCGCAGATTGAGGCTATGCTAGGTGGAAAGCGAGCACGGCAGTATGAG
AGCTTTGACGCGTTTTACAAGGGCATGTATCGgtgagtggaaggaaggga
cggagggatcgagggacggagggacgggcaaaagcagggaggaaggcagg
gttgtgggcctctacctctattaactctatagagtgctagtcgctttgcc
tgtcctgtagatcaatggcagcacggagcacaacatggactcgtgtcgtg
aatgttgttctcatgacatgcctttcctcctcccttacttccctatacgc
gtcagGAAGGAGCACTCTGACGACAAGAACCGTTATCTGCACTTCATCGG
CACCACCATTGCTCTTGCATCTGCGGCTGCTGAGCCAACCCTCTTTCTTG
CTGCCCTAGCTGCAGTGGTCGTAGGGCTTAATGTGTTTGAGCTCACGTAC
ATGgtgaggaagggagggagggagggcaggagggagagagcacggtgaaa
gggaaggtggcgacaaacacgaccaatcactcacagcatcctccccctcc
gtctccatgttcccctaccagCGTTCCAATGGCGCCATCGAAGGGGCAGC
AATGCTCCTGGCCTACCTCTCTCTCGCGTACATCCCCCGTCGATCCCTCC
GTCGGCCCCTCCTTACCATCCTCTGTGGGTATGCATGTGCCTGGGTCGGT
CATTTCGTGATAGAGGGGAATAGACCTGCCACGTTTACGTATGCCGTCTT
CTCTTTCATAGGCGACTTTAGGATGTGGTGGGAGACGGTAGGGGAGCTAG
GAAATAAATTCATCAACATCAAGTAA
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protein sequence of NO23G00200.1

>NO23G00200.1-protein ID=NO23G00200.1-protein|Name=NO23G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MASSKTSSLFPSSLFLLLLIAALAISYQYLSTHHAQIEAMLGGKRARQYE
SFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVV
GLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACA
WVGHFVIEGNRPATFTYAVFSFIGDFRMWWETVGELGNKFINIK*
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Synonyms
Publications