NO22G02140.3, NO22G02140.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G02140.3
Unique Name	NO22G02140.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1591
Alignment location	chr22:663965..666756 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:663965..666756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G02140.3 vs.
Match: EWM20538.1 (ccr4 carbon catabolite repression 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 9.300e-33
Identity = 80/147 (54.42%), Postives = 103/147 (70.07%), Query Frame = 0

Query:    4 AASSSSSSSMATPAASSLLLPRRFLPIV----VNNEEHER----RTNTGMSGGEEGEEEEDSSIFTLLQWNIMADTFSSPSLYTRVPAIGVMEWGLRRVKILEEITRWQPDVVTLQEVDHFFDDLQPALQRLGYTGLFVRKPLNADG 143
            A  SSSSSS+++P     LLPR F+P+     +++E  ++    R   G +  EE +  ++S ++TL+QWN+MAD FSSPSLYTRV   G+M W  RR K+LEE+TRW PDVVTLQE+DH+FDDL PA   LGYTG FVRKPLN DG
Sbjct:   13 AVLSSSSSSLSSP-----LLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDG 154

The following BLAST results are available for this feature:

BLAST of NO22G02140.3 vs.

BLAST of NO22G02140.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20538.1	9.300e-33	54.42	ccr4 carbon catabolite repression 4, partial [Nann...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G02140	NO22G02140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G02140.3	NO22G02140.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G02140.3.cds1	NO22G02140.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02140.3.cds2	NO22G02140.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02140.3.cds3	NO22G02140.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02140.3.cds4	NO22G02140.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02140.3.cds5	NO22G02140.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02140.3.cds6	NO22G02140.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G02140.3.cds7	NO22G02140.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:663965..666756+
coding sequence from alignment at chr22:663965..666756+

mRNA sequence

>NO22G02140.3 ID=NO22G02140.3|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp
CAGGTCTTGCCCTCCAGCCCTTCACCTTACCATTGCTACCATTTTCACCT
CATTCCTCCTCTTCGTCCAGCGCCCTCTACTCGTTGTGTCTAACCAGCGT
CTCCTTTGCTTTGCCTCGAGCACCCAGGCCTCCACCCGCGCTGCTCCCCT
CTTCGTTTCACGCACGTTGAAGCCTCTCATGCGCGCCGCAGCCTCCTCCT
CCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCT
CGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGAAAGAAGGAC
CAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCAT
CAATTTTTACCTTGCTTCAGTGGAACATCATGGCCGACACATTTTCCTCC
CCCTCCCTTTACACCCGTGTGCCCGCCATAGGGGTCATGGAATGGGGCTT
AAGAAGGGTGAAAATCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCG
TCACGCTACAGGAGGTGGATCACTTTTTTGATGACCTCCAACCCGCCCTC
CAACGCCTTGGCTACACCGGACTCTTTGTTCGTAAGCCCCTCAATGCTGA
TGGCGCTGCCACCTTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCC
ATGCCTACAGCTACCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGT
GAGGGAGGAGTGAGAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGAT
GGTGCGGAATAGGAAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGG
AGGAGAAGGGAAGGAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAG
GCCATGAAAACTGCGGCGGGGGAGCAGGTACGGGCCTCTCAAGCCCGGCA
GCTGGTGGCCCATATACGGGCACAACGTGAAGCCTACAGCCGTGCACATG
GACGCTCACTCCCTGTCCTCCTTTGTGGAGACTTTAATGCTGCTCCTCAC
GACAAGGAGGGAAGGGTCACCTCTCCCTCCCTCCCTCCCTCATCTTCCCC
TTCCCTAGAAGGAGGAGGAGGAGGAGGAGGAAGGGGGGGATACAGAGCTG
AGTGTGTACCGTTGCTGCGGAGGGAGGGTTTCGAGAGCGTGTATGACCTG
GAAGATCCCAATCTATTTACCACGTGGAAATTTCGTCCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCCGCACTT
TCTCCGAAGGCGAAACAAAGCACTGCATCGACTACATCTTCCTCATCTCC
TCCTCCTCCTCCTCCTCCTCCTCTCCCTCTTCATCCACCTCCACCCTCCT
TCCGTCAGCCTCTACACCAGCTCCGACCCCCTCCTCTTCCTCCTTCCCCC
CCCTCCCCTCCTTTTCCCTTCTCCCTACCCATCTCCTCTCCATCCCCTCT
CCAGCAGAGATCGGTCCTCAGGCCCTCCCTTGTCTCAGCTACCCCTCCGA
TCATCTGGCCATTGGAATGCGTTTTCGTCTCGTGAGGGGGAAGGACGGAG
GGATGGAGGGAGGAAGGGGCGGAGGGAGGGAGGGATTATAA

protein sequence of NO22G02140.3

>NO22G02140.3-protein ID=NO22G02140.3-protein|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MRAAASSSSSSSMATPAASSLLLPRRFLPIVVNNEEHERRTNTGMSGGEE
GEEEEDSSIFTLLQWNIMADTFSSPSLYTRVPAIGVMEWGLRRVKILEEI
TRWQPDVVTLQEVDHFFDDLQPALQRLGYTGLFVRKPLNADGAATFVKTS
SLEVVSSHAYSYLEEEEEEGEGGSEGGVRSRPSNQVALAVMVRNRKGRGR
RKGEEEEEEKGRREEWLVVNTHLKAMKTAAGEQVRASQARQLVAHIRAQR
EAYSRAHGRSLPVLLCGDFNAAPHDKEGRVTSPSLPPSSSPSLEGGGGGG
GRGGYRAECVPLLRREGFESVYDLEDPNLFTTWKFRPSSSSSSSSSFSSS
SSSSSRTFSEGETKHCIDYIFLISSSSSSSSSPSSSTSTLLPSASTPAPT
PSSSSFPPLPSFSLLPTHLLSIPSPAEIGPQALPCLSYPSDHLAIGMRFR
LVRGKDGGMEGGRGGGREGL*

mRNA from alignment at chr22:663965..666756+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G02140.3 ID=NO22G02140.3|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=mRNA|length=2792bp|location=Sequence derived from alignment at chr22:663965..666756+ (Nannochloropsis oceanica)
CAGGTCTTGCCCTCCAGCCCTTCACCTTACCATTGCTACCATTTTCACCT
CATTCCTCCTCTTCGTCCAGCGCCCTCTACTCGTTGTGTCTAACCAGCGT
CTCCTTTGCTTTGCCTCGAGCACCCAGGCCTCCACCCGCGCTGCTCCCCT
CTTCGTTTCACGCACGTTGAAGCCTCTCATGCGCGCCGCAGCCTCCTCCT
CCTCCTCTTCTTCGATGGCTACCCCAGCGGCGTCCTCCCTTCTCCTCCCT
CGACGCTTCCTCCCCATTGTCGTCAACAATGAGGAACATGAAAGAAGGAC
CAACACTGGCATGTCCGGTGGGGAAGAGGGAGAGGAGGAAGAAGACTCAT
CAATTTTTACCTTGCTTCAGGTTTGCAATACTGCCATTTTTAATCTCTTA
GCGTAGCCTTTTTTCCTCCTTCCATTCCTCCCGTCTCCTCCCATCCCTCA
TTCCCTTCTCTTACAGTGGAGCATCGTGTTGTCGTCTGTGCCTCCCACTC
TTACCGCATGGACATATGTCTCTCCCTTACCATGTGGATGCATATGCTTC
TCCTCTCCCCACACGCGAGTATCCTCCATCTTCTCATTCCAGGCGCTCTC
CCCATCTATTCTCCTTGTCCTTTCTCTTCACCCCTCCCTCCCTCCCTCCC
CCTCCCTCAGTGGAACATCATGGCCGACACATTTTCCTCCCCCTCCCTTT
ACACCCGTGTGCCCGCCATAGGGGTCATGGAATGGGGCTTAAGAAGGGTG
AAAATCCTCGAGGAAATCACCCGCTGGCAGCCGGACGTCGTCACGCTACA
GGTATCCCCACTTACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTGCATCCTCCTTCCTTTTGGCATGGGACACAC
ATGTTTTGCTTTTTCTGTTCATTCGCAATACTCGCACAACCCACACACCC
CTGTTACTCTCTCTCTCCTGTTAGACACCCTCCTCTCATTCTCCGCCTCC
TCCCTCCCCACAAACTCTTCCATTATGGTGGAATAATCTTCCACGCGAAT
CCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGAGGTGGATCACTTTT
TTGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTT
GTTCGTAAGCCCCTCAATGCTGATGGTATGTGGCCTTCCTCCCCCCCTTC
CTCCCTTCTTCTCTCGCCCTCATTCTCAGGTGATGTCTTTTACACCCTGC
CGCTGCTCAGGCTTCTCCCTCCCTCCCTCCCTCTCTCAGGCGCTGCCACC
TTTGTCAAGACTTCCTCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTA
CCTTGAGGAGGAGGAGGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGA
GAAGCAGGCCTTCGAATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGG
AAAGGAAGAGGGAGGAGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAG
GAGGGAGGAGTGGCTCGTCGTCAACACGCACTTGAAGGCCATGAAAACTG
CGGCGGGGGAGCAGGTACGAACGGAGAGAGGGAGGGAGGGAGTGGGAGAA
GCACGAAAGGCCCATATAGCCGGACACGTCCGGCCACTACTTGATGACAC
ACTCACCCTCAACCCTTCTCTTCCTTTCTTCTTTCCTTCCTCTCTCCTCT
CTCTTTCCCTCTCTCCCTTTCTCCAGGTACGGGCCTCTCAAGCCCGGCAG
CTGGTGGCCCATATACGGGCACAACGTGAAGCCTACAGGTGAGTCCTTCC
CTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTGCCTCCCTTTTCATTCCT
CTTTCTCTTTGCGCACTGACCAGCCTTCCTTCCCTTCCCCTCCCTTCCCT
TCCCTTCCTCCCTCTCCCCAGCCGTGCACATGGACGCTCACTCCCTGTCC
TCCTTTGTGGAGACTTTAATGCTGCTCCTCACGACAAGGAGGGAAGGGTC
ACCTCTCCCTCCCTCCCTCCCTCATCTTCCCCTTCCCTAGAAGGAGGAGG
AGGAGGAGGAGGAAGGGGGGGATACAGAGCTGAGTGTGTACCGTTGCTGC
GGAGGGAGGGTTTCGAGAGCGTGTATGACCTGGAAGAGTAAGACTGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGATAGGGCGAGTCTTCATATGTCGCT
TTTTTTCTTGACTAATCCCTCCTCTTCCTCTTTCCCCCCCCCTCCTCCTC
TTCCTCTTCCCCTTCCTTCTCCTCTTCCCCTTCCTTCTCATCTTTCCCTT
CCTCCTCCTCCTCCTCTTCCTCTTCCCCTTCCTCCTCCTCCTCCTCCGTC
ACTCAGTCCCAATCTATTTACCACGTGGAAATTTCGTCCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCCGCACT
TTCTCCGAAGGCGAAACAAAGCACTGCATCGACTACATCTTCCTCATCTC
CTCCTCCTCCTCCTCCTCCTCCTCTCCCTCTTCATCCACCTCCACCCTCC
TTCCGTCAGCCTCTACACCAGCTCCGACCCCCTCCTCTTCCTCCTTCCCC
CCCCTCCCCTCCTTTTCCCTTCTCCCTACCCATCTCCTCTCCATCCCCTC
TCCAGCAGAGATCGGTCCTCAGGCCCTCCCTTGTCTCAGCTACCCCTCCG
ATCATCTGGCCATTGGAATGCGTTTTCGTCTCGTGAGGGGGAAGGACGGA
GGGATGGAGGGAGGAAGGGGCGGAGGGAGGGAGGGATTATAA

Coding sequence (CDS) from alignment at chr22:663965..666756+

>NO22G02140.3 ID=NO22G02140.3|Name=NO22G02140.3|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr22:663965..666756+ (Nannochloropsis oceanica)
ATGCGCGCCGCAGCCTCCTCCTCCTCCTCTTCTTCGATGGCTACCCCAGC
GGCGTCCTCCCTTCTCCTCCCTCGACGCTTCCTCCCCATTGTCGTCAACA
ATGAGGAACATGAAAGAAGGACCAACACTGGCATGTCCGGTGGGGAAGAG
GGAGAGGAGGAAGAAGACTCATCAATTTTTACCTTGCTTCAGTGGAACAT
CATGGCCGACACATTTTCCTCCCCCTCCCTTTACACCCGTGTGCCCGCCA
TAGGGGTCATGGAATGGGGCTTAAGAAGGGTGAAAATCCTCGAGGAAATC
ACCCGCTGGCAGCCGGACGTCGTCACGCTACAGGAGGTGGATCACTTTTT
TGATGACCTCCAACCCGCCCTCCAACGCCTTGGCTACACCGGACTCTTTG
TTCGTAAGCCCCTCAATGCTGATGGCGCTGCCACCTTTGTCAAGACTTCC
TCTCTGGAGGTCGTCTCTTCCCATGCCTACAGCTACCTTGAGGAGGAGGA
GGAGGAGGGGGAGGGAGGGAGTGAGGGAGGAGTGAGAAGCAGGCCTTCGA
ATCAGGTGGCGCTCGCGGTGATGGTGCGGAATAGGAAAGGAAGAGGGAGG
AGGAAGGGGGAGGAGGAGGAGGAGGAGAAGGGAAGGAGGGAGGAGTGGCT
CGTCGTCAACACGCACTTGAAGGCCATGAAAACTGCGGCGGGGGAGCAGG
TACGGGCCTCTCAAGCCCGGCAGCTGGTGGCCCATATACGGGCACAACGT
GAAGCCTACAGCCGTGCACATGGACGCTCACTCCCTGTCCTCCTTTGTGG
AGACTTTAATGCTGCTCCTCACGACAAGGAGGGAAGGGTCACCTCTCCCT
CCCTCCCTCCCTCATCTTCCCCTTCCCTAGAAGGAGGAGGAGGAGGAGGA
GGAAGGGGGGGATACAGAGCTGAGTGTGTACCGTTGCTGCGGAGGGAGGG
TTTCGAGAGCGTGTATGACCTGGAAGATCCCAATCTATTTACCACGTGGA
AATTTCGTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCCTCC
TCCTCCTCCTCCTCCCGCACTTTCTCCGAAGGCGAAACAAAGCACTGCAT
CGACTACATCTTCCTCATCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCT
CTTCATCCACCTCCACCCTCCTTCCGTCAGCCTCTACACCAGCTCCGACC
CCCTCCTCTTCCTCCTTCCCCCCCCTCCCCTCCTTTTCCCTTCTCCCTAC
CCATCTCCTCTCCATCCCCTCTCCAGCAGAGATCGGTCCTCAGGCCCTCC
CTTGTCTCAGCTACCCCTCCGATCATCTGGCCATTGGAATGCGTTTTCGT
CTCGTGAGGGGGAAGGACGGAGGGATGGAGGGAGGAAGGGGCGGAGGGAG
GGAGGGATTATAA

Synonyms

Publications