NO22G02050.1, NO22G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02050.1
Unique NameNO22G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1312
Alignment locationchr22:635068..637167 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:635068..637167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02050.1 vs.
Match: EWM20548.1 (surfeit locus protein 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 173.7 bits (439), Expect = 1.000e-39
Identity = 88/147 (59.86%), Postives = 109/147 (74.15%), Query Frame = 0 
Query:   39 GRRRPFSSSTSTKTSSSTATGSKNTALDTWTTKDKAGLLLFGGLVIGTGSLGMWQAQRYYWKIDAIKERSEMLAKQPESLTNLPESHRRYHVRGTFLHDKELHVGPRSAPPSVHGPAQGMSTNPQGLYVLTPFRCEGDGRLLLVNRG 186
            GRRR  SS+       S++TG+         + D AGLLLFGGLV+GTG LG+WQ++RY+WKIDAI+ER+E LAKQPE L + PE++RRY V GTFLH  EL VGPR+APPSVHGPAQG+ TNPQG Y+LTPF+  GDG +  + RG
Sbjct:   30 GRRRVSSSTRLPPAGVSSSTGNSKGK-----STDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRG 171
The following BLAST results are available for this feature:
BLAST of NO22G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20548.11.000e-3959.86surfeit locus protein 1, partial [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02050NO22G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02050.1NO22G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02050.1.cds1NO22G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02050.1.cds2NO22G02050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02050.1.cds3NO22G02050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02050.1 ID=NO22G02050.1|Name=NO22G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp
AAAGACAATCACCAAACAGCGCGCAAGGATGCGGCCCCACATGTTGCTCC
AGCGGGGAAGCGGCATCTTATATCCTTCCACGATCAAGCTACACCCTCCC
ATCCCTGCATCCTCCCCTCCCGCCTCCCTCCCCACCGCCGCAGGCCGCCG
CCGCCCGTTCTCCTCCTCCACCTCCACAAAGACAAGCAGCAGTACCGCTA
CGGGGTCCAAAAATACAGCGTTGGATACATGGACGACTAAAGACAAGGCT
GGATTACTTCTGTTTGGAGGGCTGGTGATTGGGACGGGGAGCCTAGGGAT
GTGGCAGGCGCAGAGGTATTATTGGAAAATCGATGCGATCAAGGAGAGGA
GCGAAATGCTGGCCAAGCAGCCCGAGTCCTTGACAAACCTTCCCGAGTCC
CACCGCCGCTACCACGTGCGAGGCACGTTTCTCCACGACAAAGAGCTGCA
CGTGGGTCCTCGTTCGGCTCCTCCTTCTGTGCATGGCCCAGCTCAAGGGA
TGAGCACGAATCCTCAGGGTCTGTATGTGCTGACGCCCTTCCGGTGTGAG
GGGGACGGTCGTCTCCTCCTCGTGAACCGTGGCTGGGTGCCGCTCCGCTC
TCTCTCCTCCCTCTCTCGTCCTCCCTCGACAGTCTCGCTAGTAGGGGTGG
TAGAGCGTGAAGGAGAGAAGGGAGGGAGATTTGCGCCCGTCAATGATTTC
GCTGTCTCAGCCGGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAG
GAAAGGAAAGAGGAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGA
GGTGGTTGATGGGGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACC
GAGGGGCAGCTATACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTC
CTCATCCTCCTTCTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCT
CTCTCCCTTCCTGGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTT
TATGTGCAGCCTTCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCT
TGCCGGGGCCGGCGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTC
GAAGAGGGTGAAGGGAGAAGGGAGGGAACGAGGGAGGGAAGGAGGGACAA
AATAGTACCCGGAAATTAAAAGGAAAGGAATGAGGCCACGGCCGTGAGTG
TGATGTGCGTGGAGAGACAGGTGAGCAGGAGGCTGCCTTTACATCCTCTT
CTATGTTGTATTTTACACCTCTCTTTCATTATAGAGATATAGATAAAAAA
ATAGATACAAAT
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protein sequence of NO22G02050.1

>NO22G02050.1-protein ID=NO22G02050.1-protein|Name=NO22G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MRPHMLLQRGSGILYPSTIKLHPPIPASSPPASLPTAAGRRRPFSSSTST
KTSSSTATGSKNTALDTWTTKDKAGLLLFGGLVIGTGSLGMWQAQRYYWK
IDAIKERSEMLAKQPESLTNLPESHRRYHVRGTFLHDKELHVGPRSAPPS
VHGPAQGMSTNPQGLYVLTPFRCEGDGRLLLVNRGWVPLRSLSSLSRPPS
TVSLVGVVEREGEKGGRFAPVNDFAVSAGEEGGREGGREGRKGKRKPLLW
VDLPAIERWLMGEEGEEGGGKGATEGQLYYFIQLQEEAVSSSSSFSSSSS
SSSSLSSSLPSWPVPKAVTDVGQFYVQPSTHLVYALTWFSLAGAGAIMTR
RILRPKIRRG*
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mRNA from alignment at chr22:635068..637167+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02050.1 ID=NO22G02050.1|Name=NO22G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp|location=Sequence derived from alignment at chr22:635068..637167+ (Nannochloropsis oceanica)
AAAGACAATCACCAAACAGCGCGCAAGGATGCGGCCCCACATGTTGCTCC
AGCGGGGAAGCGGCATCTTATATCCTTCCACGATCAAGCTACACCCTCCC
ATCCCTGCATCCTCCCCTCCCGCCTCCCTCCCCACCGCCGCAGGCCGCCG
CCGCCCGTTCTCCTCCTCCACCTCCACAAAGACAAGCAGCAGTACCGCTA
CGGGGTCCAAAAATACAGCGTTGGATACATGGACGACTAAAGACAAGGCT
GGATTACTTCTGTTTGGAGGGCTGGTGATTGGGACGGGGAGCCTAGGGAT
GTGGCAGGCGCAGAGGTATTATTGGAAAATCGATGCGATCAAGGAGAGGA
GCGAAATGCTGGCCAAGCAGCCCGAGTCCTTGACAAAGTGAGTAGATGAG
GAGAGAAGTATGAAGGAGGCGCGTTTGTCTTTGTCTCCGCGTCGTTGTTG
CTGTTGATGATGGTGATGGTGTTTGCTAATGTTTGTTGTTGTTGTTGTTG
TTGTTCTTGTTCTTGTTCTTATCTCTGTTGTGGTTGTGATTGTTGCGGTG
ATTGTTGTTGTGATGGTTATTTCCAGTATTGCTGCTTTTGTAAATGTTGC
CGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTCTTGGTTTTTTTTCCCTCTTCAGATGAATGTCTGATTTATTAAGG
CTTAAGTGCACCGCAATATCGTTAATACGACCGAATTCCGATGAAAGCGT
GTATAGCCATCGTCATACGTGGTGATCACCTCAACTTCCTGACCATCCCT
CCGTCCCTCCCTCTCTTCCTCCTCAGCCTTCCCGAGTCCCACCGCCGCTA
CCACGTGCGAGGCACGTTTCTCCACGACAAAGAGCTGCACGTGGGTCCTC
GTTCGGCTCCTCCTTCTGTGCATGGCCCAGCTCAAGGGATGAGCACGAAT
CCTCAGGGTCTGTATGTGCTGACGCCCTTCCGGTGTGAGGGGGACGGGTA
AGATGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGG
GAGGGAGGGAGGGAAGGGGGATGAGGGGAGGAAGGTTCAGGGTCTACTTC
AACAGGTCAGTTTTTATAAAGGTTGGTGATTTCTGCGTGAAATTAGCTGT
TGAGTGCTTGTCTCTCCTTCTCTCCCTTCCTTCCTTCCTCCCTCTCTCCC
TGCCTCCCTCCCCTTCACTCCCCATCACTCCACACTTCCATCTTTTGAGC
CATCACCCTCCATCCCTCATCATCTGAGCCATCACCATCCATCCCTCCCT
CCCTCGCTTCCTCCCTCCCTCCCTCGCTTCCTCCCTCCCTCCCCAGTCGT
CTCCTCCTCGTGAACCGTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCT
CTCTCGTCCTCCCTCGACAGTCTCGCTAGTAGGGGTGGTAGAGCGTGAAG
GAGAGAAGGGAGGGAGATTTGCGCCCGTCAATGATTTCGCTGTCTCAGCC
GGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAAGGAAAGAG
GAAGCCTTTATTATGGGTGGACCTGCCGGCAATCGAGAGGTGGTTGATGG
GGGAGGAAGGAGAGGAGGGCGGGGGGAAAGGAGCGACCGAGGGGCAGCTA
TACTACTTCATTCAATTGCAAGAGGAAGCCGTCTCCTCCTCATCCTCCTT
CTCCTCCTCCTCCTCCTCTTCCTCTTCGCTCTCGTCCTCTCTCCCTTCCT
GGCCGGTGCCCAAGGCTGTGACGGATGTGGGCCAATTTTATGTGCAGCCT
TCCACCCACCTCGTTTATGCACTCACCTGGTTCTCGCTTGCCGGGGCCGG
CGCAATCATGACCCGTAGGATTCTCAGGCCCAAGATTCGAAGAGGGTGAA
GGGAGAAGGGAGGGAACGAGGGAGGGAAGGAGGGACAAAATAGTACCCGG
AAATTAAAAGGAAAGGAATGAGGCCACGGCCGTGAGTGTGATGTGCGTGG
AGAGACAGGTGAGCAGGAGGCTGCCTTTACATCCTCTTCTATGTTGTATT
TTACACCTCTCTTTCATTATAGAGATATAGATAAAAAAATAGATACAAAT
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Coding sequence (CDS) from alignment at chr22:635068..637167+

>NO22G02050.1 ID=NO22G02050.1|Name=NO22G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr22:635068..637167+ (Nannochloropsis oceanica)
ATGCGGCCCCACATGTTGCTCCAGCGGGGAAGCGGCATCTTATATCCTTC
CACGATCAAGCTACACCCTCCCATCCCTGCATCCTCCCCTCCCGCCTCCC
TCCCCACCGCCGCAGGCCGCCGCCGCCCGTTCTCCTCCTCCACCTCCACA
AAGACAAGCAGCAGTACCGCTACGGGGTCCAAAAATACAGCGTTGGATAC
ATGGACGACTAAAGACAAGGCTGGATTACTTCTGTTTGGAGGGCTGGTGA
TTGGGACGGGGAGCCTAGGGATGTGGCAGGCGCAGAGGTATTATTGGAAA
ATCGATGCGATCAAGGAGAGGAGCGAAATGCTGGCCAAGCAGCCCGAGTC
CTTGACAAACCTTCCCGAGTCCCACCGCCGCTACCACGTGCGAGGCACGT
TTCTCCACGACAAAGAGCTGCACGTGGGTCCTCGTTCGGCTCCTCCTTCT
GTGCATGGCCCAGCTCAAGGGATGAGCACGAATCCTCAGGGTCTGTATGT
GCTGACGCCCTTCCGGTGTGAGGGGGACGGTCGTCTCCTCCTCGTGAACC
GTGGCTGGGTGCCGCTCCGCTCTCTCTCCTCCCTCTCTCGTCCTCCCTCG
ACAGTCTCGCTAGTAGGGGTGGTAGAGCGTGAAGGAGAGAAGGGAGGGAG
ATTTGCGCCCGTCAATGATTTCGCTGTCTCAGCCGGGGAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAGGAAAGGAAAGAGGAAGCCTTTATTATGG
GTGGACCTGCCGGCAATCGAGAGGTGGTTGATGGGGGAGGAAGGAGAGGA
GGGCGGGGGGAAAGGAGCGACCGAGGGGCAGCTATACTACTTCATTCAAT
TGCAAGAGGAAGCCGTCTCCTCCTCATCCTCCTTCTCCTCCTCCTCCTCC
TCTTCCTCTTCGCTCTCGTCCTCTCTCCCTTCCTGGCCGGTGCCCAAGGC
TGTGACGGATGTGGGCCAATTTTATGTGCAGCCTTCCACCCACCTCGTTT
ATGCACTCACCTGGTTCTCGCTTGCCGGGGCCGGCGCAATCATGACCCGT
AGGATTCTCAGGCCCAAGATTCGAAGAGGGTGA
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Synonyms
Publications