NO22G01960, NO22G01960 (gene) Nannochloropsis oceanica

Overview
NameNO22G01960
Unique NameNO22G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2605
Alignment locationchr22:584308..586912 +

Link to JBrowse

Properties
Property NameValue
DescriptionAutophagy protein 5
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:584308..586912 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0034045phagophore assembly site membrane
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007239Atg5
Homology
BLAST of NO22G01960 vs. NCBI_GenBank
Match: CBJ49211.1 (autophagy-related protein 5 [Ectocarpus siliculosus])

HSP 1 Score: 105.1 bits (261), Expect = 4.800e-19
Identity = 73/207 (35.27%), Postives = 95/207 (45.89%), Query Frame = 0
Query:   30 WSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSD 237
            W   IP EL+M  SEV  +  PLP Y LLPR+G+LP  A      FG    E  P +Q+++W               GE    PL+WH+P GVL+DL                        R G   LPWRI V FQ  P+ QV    FP    +          +++H+   LKQA  LQ G S   M LAKE++  LW+A+ S+D
Sbjct:  153 WGGMIPTELSMDSSEVTSLQRPLPLYLLLPRMGFLPCVAEAISHHFG----EVAPDAQRTLW---------LEETRSGE----PLRWHVPTGVLFDLIAGVGQEEGGGAKHGEEVPWSGPGRLG--LLPWRITVHFQGCPRRQV----FPLEKEAD---------IRRHYTNALKQALFLQSGSSRAGMTLAKENQNRLWQAIKSND 327          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: GAQ86304.1 (autophagy protein 5 [Klebsormidium nitens])

HSP 1 Score: 103.2 bits (256), Expect = 1.800e-18
Identity = 78/285 (27.37%), Postives = 118/285 (41.40%), Query Frame = 0
Query:   26 QSTLWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL---IASRPQRLPLRLHI---GRDPALL-----XXXXXXXXXXXXXXXXXXLGQALRLAVPHLF 300
            Q  +W    P+ + ++  EV  ++ P P + + PRLGYLPL A      F      A PP   ++W                E R +PLKWH+P GVLYDL                            + LPW++ V F+  P + +   P     +           V+  +   LK+A ++ HG + P M L+++D+  LW ++A  DF+R+      L    +SRP+ +PLRL++   G   A +                       LG AL  AVPHLF
Sbjct:   17 QKVVWEGNFPLRIQLEAKEVTTLTPPPPLFLMAPRLGYLPLLASKIEPHF----RAALPPGTDAIWF---------------EYRGLPLKWHIPTGVLYDLLAE------------------------EKTLPWQLTVHFRTYPSELI---PIEGEET-----------VKWSYMNALKEAVYIMHGSTKPVMSLSQKDQEELWRSLAEGDFNRHTSSAASLGVSTSSRPRSVPLRLYLRQAGTSGAHVKKWEEIAVTTRCADVMDSGSPATLGGALHKAVPHLF 244          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: XP_024574422.1 (hypothetical protein F442_18406 [Plasmopara halstedii] >CEG38053.1 hypothetical protein F442_18406 [Plasmopara halstedii])

HSP 1 Score: 95.5 bits (236), Expect = 3.800e-16
Identity = 66/245 (26.94%), Postives = 102/245 (41.63%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL------IASRPQRLPLRLHIGRDPAL 268
            +W   IP+  T+  +EV  +  P PFYA++PR+ YL     D I      A         S+W                E + +PL WHLP G+L D                               LPW I V F + P+D++L    P    SS         ++ HF   LKQA+ L+ G +   MGL +  +  +W ++ ++D+  Y+    +L        S  + LPLR+H+G +PA+
Sbjct:   17 VWDGRIPVVFTLDPNEVTTLHAPRPFYAMVPRMSYLVSQTRDVIEYLRDSAPPISIMQGASIWF---------------EAKGVPLHWHLPFGLLRDTL------------------CGPSADSDANDLPWAITVHFLNFPRDKLL----PCENESS---------IESHFMHSLKQATFLRMGSTKAVMGLPEAQQTQIWTSITNNDYESYRQATHELHLDGGENVSALRLLPLRVHLGTEPAI 215          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: XP_002905836.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY67188.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 95.1 bits (235), Expect = 4.900e-16
Identity = 66/245 (26.94%), Postives = 103/245 (42.04%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL------IASRPQRLPLRLHIGRDPAL 268
            +W+  IP+  ++  +EV  +  P PFYA++PR+ YL     D +  F   A         S+W                E +  PL WHLP G+L DL                         +G   LPW I V F + P+D +L    P     S         V+ HF   LKQA+ L+ G +   M L +  +  +W +++ +D+  Y+   ++L       AS  + LPLR+H+   PA+
Sbjct:    7 VWAGRIPVVFSLDPNEVTTLHAPRPFYAMVPRMSYLVSQTRDVVDYFRDAAPPMSAIQGASIWF---------------EAKGAPLHWHLPFGLLRDLL-------------------CGPGVDGDADLPWAITVHFLNFPKDVLL----PCDNEQS---------VESHFMHSLKQATFLRMGSTKVVMALPEAQQTQIWTSISQNDYESYRQATYELHLDGGVDASALRHLPLRVHLDNAPAI 204          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: ETK75283.1 (hypothetical protein L915_18087 [Phytophthora parasitica])

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-15
Identity = 64/245 (26.12%), Postives = 103/245 (42.04%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL------IASRPQRLPLRLHIGRDPAL 268
            +W+  +P+  ++  +EV  +  P PFYA++PR+ YL     D +  F   A         S+W                E + +PL WHLP G+L DL                         +    LPW I V F + P+D +L    P     S         V+ HF   LKQA+ L+ G +   M L +  +  +W +++ +D+  Y+   ++L       AS  + LPLR+H+   PA+
Sbjct:   17 VWAGRLPVVFSLDPNEVTTLHAPRPFYAMVPRMSYLVSQTRDVVEYFRDAAPPMSAIQGASIWF---------------EAKGVPLHWHLPFGLLRDLL-------------------CGPGVDSDTDLPWAITVHFLNFPKDILL----PCDNEQS---------VESHFMHSLKQATFLRMGSTKAVMALPEAQQTQIWTSISQNDYESYRQATYELHLDGGVDASALRHLPLRVHLDNAPAI 214          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: ETK75285.1 (hypothetical protein, variant 2 [Phytophthora parasitica] >ETP04840.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-15
Identity = 64/245 (26.12%), Postives = 103/245 (42.04%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL------IASRPQRLPLRLHIGRDPAL 268
            +W+  +P+  ++  +EV  +  P PFYA++PR+ YL     D +  F   A         S+W                E + +PL WHLP G+L DL                         +    LPW I V F + P+D +L    P     S         V+ HF   LKQA+ L+ G +   M L +  +  +W +++ +D+  Y+   ++L       AS  + LPLR+H+   PA+
Sbjct:   17 VWAGRLPVVFSLDPNEVTTLHAPRPFYAMVPRMSYLVSQTRDVVEYFRDAAPPMSAIQGASIWF---------------EAKGVPLHWHLPFGLLRDLL-------------------CGPGVDSDTDLPWAITVHFLNFPKDILL----PCDNEQS---------VESHFMHSLKQATFLRMGSTKAVMALPEAQQTQIWTSISQNDYESYRQATYELHLDGGVDASALRHLPLRVHLDNAPAI 214          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: ETL28711.1 (hypothetical protein L916_17991 [Phytophthora parasitica] >ETP04838.1 hypothetical protein F441_18471 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-15
Identity = 64/245 (26.12%), Postives = 103/245 (42.04%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL------IASRPQRLPLRLHIGRDPAL 268
            +W+  +P+  ++  +EV  +  P PFYA++PR+ YL     D +  F   A         S+W                E + +PL WHLP G+L DL                         +    LPW I V F + P+D +L    P     S         V+ HF   LKQA+ L+ G +   M L +  +  +W +++ +D+  Y+   ++L       AS  + LPLR+H+   PA+
Sbjct:   17 VWAGRLPVVFSLDPNEVTTLHAPRPFYAMVPRMSYLVSQTRDVVEYFRDAAPPMSAIQGASIWF---------------EAKGVPLHWHLPFGLLRDLL-------------------CGPGVDSDTDLPWAITVHFLNFPKDILL----PCDNEQS---------VESHFMHSLKQATFLRMGSTKAVMALPEAQQTQIWTSISQNDYESYRQATYELHLDGGVDASALRHLPLRVHLDNAPAI 214          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: ETL28713.1 (hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-15
Identity = 64/245 (26.12%), Postives = 103/245 (42.04%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKL------IASRPQRLPLRLHIGRDPAL 268
            +W+  +P+  ++  +EV  +  P PFYA++PR+ YL     D +  F   A         S+W                E + +PL WHLP G+L DL                         +    LPW I V F + P+D +L    P     S         V+ HF   LKQA+ L+ G +   M L +  +  +W +++ +D+  Y+   ++L       AS  + LPLR+H+   PA+
Sbjct:   17 VWAGRLPVVFSLDPNEVTTLHAPRPFYAMVPRMSYLVSQTRDVVEYFRDAAPPMSAIQGASIWF---------------EAKGVPLHWHLPFGLLRDLL-------------------CGPGVDSDTDLPWAITVHFLNFPKDILL----PCDNEQS---------VESHFMHSLKQATFLRMGSTKAVMALPEAQQTQIWTSISQNDYESYRQATYELHLDGGVDASALRHLPLRVHLDNAPAI 214          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: XP_009842905.1 (hypothetical protein H257_16238 [Aphanomyces astaci] >ETV67647.1 hypothetical protein H257_16238 [Aphanomyces astaci])

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-15
Identity = 70/243 (28.81%), Postives = 104/243 (42.80%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKS--VWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKLI-ASRPQR-LPLRLHIGRDPAL 268
            LW   +P+  ++  SE+  +  P P+YA++PR+  L  AA DA++      A     SQ S  VW                E + +PLKWHLP GVLYDL                          G   LPW + V FQ  P   +L       P  +        AV+ HF    KQ+  L +G +   M L ++    LWE    +DFS ++     L+ +S P+R +PLR+ +  +P +
Sbjct:   10 LWEGHVPVCFSIDASEITTLQVPRPYYAMVPRVSSLMCAATDAVINHFKDVAPPMLSSQLSRYVWF---------------EFKGLPLKWHLPFGVLYDL-------------------------HGDDMLPWEVTVHFQGYPSQHLL-------PCDNLQ------AVEMHFMNSYKQSMFLLYGSTKWIMNLPQQKHTQLWEGHVKNDFSMFESVHATLVPSSEPKRHVPLRVLLPHEPTI 199          
BLAST of NO22G01960 vs. NCBI_GenBank
Match: XP_009842904.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV67648.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-15
Identity = 70/243 (28.81%), Postives = 104/243 (42.80%), Query Frame = 0
Query:   29 LWSSAIPIELTMKESEVAGISTPLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKS--VWXXXXXXXXXXXXXXXGEMRWMPLKWHLPGGVLYDLFKRGXXXXXXXXXXXXXXXXXXXXREGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFRGRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKLI-ASRPQR-LPLRLHIGRDPAL 268
            LW   +P+  ++  SE+  +  P P+YA++PR+  L  AA DA++      A     SQ S  VW                E + +PLKWHLP GVLYDL                          G   LPW + V FQ  P   +L       P  +        AV+ HF    KQ+  L +G +   M L ++    LWE    +DFS ++     L+ +S P+R +PLR+ +  +P +
Sbjct:   10 LWEGHVPVCFSIDASEITTLQVPRPYYAMVPRVSSLMCAATDAVINHFKDVAPPMLSSQLSRYVWF---------------EFKGLPLKWHLPFGVLYDL-------------------------HGDDMLPWEVTVHFQGYPSQHLL-------PCDNLQ------AVEMHFMNSYKQSMFLLYGSTKWIMNLPQQKHTQLWEGHVKNDFSMFESVHATLVPSSEPKRHVPLRVLLPHEPTI 199          
The following BLAST results are available for this feature:
BLAST of NO22G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ49211.14.800e-1935.27autophagy-related protein 5 [Ectocarpus siliculosu... [more]
GAQ86304.11.800e-1827.37autophagy protein 5 [Klebsormidium nitens][more]
XP_024574422.13.800e-1626.94hypothetical protein F442_18406 [Plasmopara halste... [more]
XP_002905836.14.900e-1626.94conserved hypothetical protein [Phytophthora infes... [more]
ETK75283.11.900e-1526.12hypothetical protein L915_18087 [Phytophthora para... [more]
ETK75285.11.900e-1526.12hypothetical protein, variant 2 [Phytophthora para... [more]
ETL28711.11.900e-1526.12hypothetical protein L916_17991 [Phytophthora para... [more]
ETL28713.11.900e-1526.12hypothetical protein, variant 2 [Phytophthora para... [more]
XP_009842905.13.200e-1528.81hypothetical protein H257_16238 [Aphanomyces astac... [more]
XP_009842904.13.200e-1528.81hypothetical protein, variant [Aphanomyces astaci]... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01960.1NO22G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|107218gene_7210Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01960.1NO22G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01960 ID=NO22G01960|Name=NO22G01960|organism=Nannochloropsis oceanica|type=gene|length=2605bp
TGAAAGAGAAGTATCGTGCGTGAGAGTCAGAAAGCTGAGTATTTAGTGCC
TGTAGAGAGATTCACGACGGTCCAGGACATGAGGTAAAGGCCTCGAGGAG
GCAACAAGGGCGTTCCGATAGGATTAATTTGGAAAATACAGGTGCCCCGC
CGCCAGTGATCCGCGTAACACTTGCCCGTCTGACTGTGTGTTGAAGGCCT
CTCGATGCCCGCACCGTCCAATTACGCCCGAACGCCCTTAGCGGCGGGAG
CAGCATTCCCAGCAGCTGGAGGAGGAGGAGGTCGTCATCTCCATTTTTGT
TCCATCGACATCCCTCCTTCCCACCTTTATACCCACGCATACACCAAACA
CCATCACCACCAAACACACACACGCACAAAAGAAAATAAACAAGCACATC
TTCCTCTCCGACTTAGCCCTGCGCCGACCGCTGACCCGGCCTTGCTTGAG
CCATGGAGTCTTCCTCCTCGTCCCTCGGCCCCTCATCCCCTCCTCCTGCC
CCTCCTCCTCCCGATCCCTCCACGATCCAGTCGACCCTCTGGTCCAGCGC
TATTCCTATCGAGCTTACAATGAAAGAAAGCGAGGTTGCAGGCATAAGCA
CCCCCCTGCCTTTTTACgtacgtcccctcctccacctccctcccctcccc
tctttcccttcctccctccctcatcctgcagttaacaatttaacaccccc
tccttcccatcccttccttgaagGCCCTTCTCCCTCGTTTGGGTTATCTT
CCCCTTGCTGCCTTAGATGCCATCGTCCTCTTTGGCGGTATCGCTGCCGA
AGCCGGCCCACCCTCTCAAAAAAGTGTGTGGTTTGAATGCTGCTGCTCCG
AGGAGGAGGAGGGAGGGAGGGAGGGAGGGGAGATGAGGTGGATGCCATTA
AAGTGGCATCTGCCTGGTGGGGTGTTGTATGATTTGTTTAAAAGAGGAGG
AGGAAGAGGAGCAACAGGAGGGGGAGGAGGAGGAGGAGGGGGAGAAAGCG
ATAAATCGAGGGAGGGAGGACAAAAATTGCCTTGGAGAATAAGGGTGAGG
TTTCAGCATCTGCCGCAGGACCAGgtaagggtatgagggagggatggaag
gagtgaggtgtaggagggaagtgagggagggagagagtaaaagagaggag
cgagggaggggagggagggacggagggtcgggaaggaggatgggaaggag
ggagcagcatcattggaaagcctgatgtatgacgtatccccttcaactcc
atttgtgtttttcatcattagGTCTTGGACCTTCCCTTCCCCTCCTCCCC
TTCCTCCTCCTCCTATGCCTCCTCGATCTCTCTGGCCGTCCAACAACATT
TTCGTGGCCGATTGAAACAAGCTTCTCACCTCCAGCACGGGGGAAGCGGT
CCTGCCATGGGTCTGGCAAAAGAAGATGAGgtaggattcataccatctat
tttcctcctcctcctcacgtatttcttgccctttctaagatattcacacc
catttcctactcttcccgatttaatttaattacctcccgctcttttctaa
tatctttccttctccagGTGGCTCTCTGGGAGGCGGTGGCGAGCTCCGAC
TTTTCCCGCTACCAAGGCCCAGTCTGGAAGCTCATTGCGTCCAGgtacct
ccctccctccctccctccctccctccctcccttcttccttccgttcctca
ctcacgcatcgtctatgctcttgcttacccttcccccctcccttcctccc
tccctagACCACAGCGTCTTCCCCTCCGCCTCCACATCGGGCGCGATCCC
GCTCTCCTTCCCTCCTTCCCGTCCTCCCTCCCGTCCTCCTCCCCTTCTTC
AGACCGCATGACCCTCGGCCAAGCGCTGAGGCTCGCGGTACCCCATTTAT
TCCTTTCAGACAAGGAGGGAGGGGGCGAGGGAGGGAGGGAGGGAGGGAGG
GAGAAAGGGCAGGGGGAGTGGGAGTTTGTTTGCCAGgtaggataggaggg
agggagggagggagggagggagggaggaagggagccaagagacccttgtg
gcacagcttatattgaagggaaggaccctgcgctcatctcccccctccct
ccctccatccctccctccatccctcctttccacccttgctcagGGTCTAA
CGTGCTTCCCCTCCCTCGCTGATGTCCCTCTGGTGGAGgtatggagcgcc
ctccgacacgccgatatgttcctctacatcatcgcccgaaggaggaaggg
aaggaggaggggataaaggaggaggaggggaaggaggtgacggatgacgg
aggaggatgaagagtaggtgcacatgtaaagggatgaagaaaaagcccaa
tctgtttgtaatgcatgaatcaaagaccctagtctgtttgtattacgtga
atcagacagcatttcccgagactgagaagactacgatttaaaccaacatg
aacaacagtcaagtgaatttctgtcgacgaactagCGCTCAAGAACAAGT
ATAACGACAAGCAATCGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGG
CAGCAGTAGCAACAGCAGGAGGTGGACGTTCGTGTCCATTGCACAATCCA
ATTAA
back to top

protein sequence of NO22G01960.1

>NO22G01960.1-protein ID=NO22G01960.1-protein|Name=NO22G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MESSSSSLGPSSPPPAPPPPDPSTIQSTLWSSAIPIELTMKESEVAGIST
PLPFYALLPRLGYLPLAALDAIVLFGGIAAEAGPPSQKSVWFECCCSEEE
EGGREGGEMRWMPLKWHLPGGVLYDLFKRGGGRGATGGGGGGGGGESDKS
REGGQKLPWRIRVRFQHLPQDQVLDLPFPSSPSSSSYASSISLAVQQHFR
GRLKQASHLQHGGSGPAMGLAKEDEVALWEAVASSDFSRYQGPVWKLIAS
RPQRLPLRLHIGRDPALLPSFPSSLPSSSPSSDRMTLGQALRLAVPHLFL
SDKEGGGEGGREGGREKGQGEWEFVCQGLTCFPSLADVPLVERSRTSITT
SNRSSSSSSSSGGGSSSNSRRWTFVSIAQSN*
back to top
Synonyms
Publications