NO22G01850, NO22G01850 (gene) Nannochloropsis oceanica

Overview
NameNO22G01850
Unique NameNO22G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2163
Alignment locationchr22:554714..556876 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:554714..556876 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G01850 vs. NCBI_GenBank
Match: EWM20405.1 (hypothetical protein Naga_101522g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 1.500e-35
Identity = 83/144 (57.64%), Postives = 98/144 (68.06%), Query Frame = 0 
Query:   99 LPADPLLRRVHIGKCLQLLYPQIFSAGVLPTSSLPLTRVREAIFHGIQAVKYSSLEAFRTEVRSLITTHACPKDCATALLNRVDHVVATARDVEMLYSHGQGLP-----------------------QARDDLFRCLGDYPSLR 220
            LP D LLRRVH+GKCLQLLYP+IF+AGVLP +S PL R+REA+FHGIQ V+Y+SL AFR EV SL+T HACP      LL+R+D V+ATA  VE LYSH QGLP                       QARD+LF+ LG +PSLR
Sbjct:   87 LPDDALLRRVHVGKCLQLLYPRIFAAGVLPPASPPLNRIREAVFHGIQTVRYTSLAAFREEVVSLMTLHACPDAVGAVLLSRIDTVLATAESVEALYSHQQGLPRGLSRRGXXXXXXXXXXGLYTYQQARDELFKTLGSFPSLR 230
The following BLAST results are available for this feature:
BLAST of NO22G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20405.11.500e-3557.64hypothetical protein Naga_101522g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01850.1NO22G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672174gene_7200Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01850.1NO22G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01850 ID=NO22G01850|Name=NO22G01850|organism=Nannochloropsis oceanica|type=gene|length=2163bp
ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC
CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAgtaacagcagttgcgccataaggcaggaccaatc
acctccttgatccttttcttccctcctgtgatgaacgaagcaatttattc
gacacgactccgacccggcaccagCCACAACTCGCCATCTGCGACAAGGA
ATGGATGGTCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTG
ATTTCGGCCGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAA
CGGCACCAGCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCC
TCCTCCCTGCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTT
CAGCTCCTATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTC
CCTTCCCCTCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAG
TCAAATACTCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATC
ACCACCCATGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGT
CGACCACGTGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACG
GGCAGGGGCTGCCCCAGgtgccgagcaggaggggggggccgagggggagg
gagggaagggggggggattgtacacttaccatcagGCGAGAGACGATTTG
TTCCGATGTCTGGGCGATTATCCAAGTTTGAGGGAGATGGAGAGGAGGAA
AAGGGAGGGCGGGCGGGTGGGAGGGAGGAGGAGAGTGGCAGGGGGGAATG
GAAAAGGAGGCCGAGAAGAGGAGGAGGAGGAGGGGGAGGAAACGAGTGAA
GGAGAGCAAAAAGGGCAGTCAAATAACAACGCGGCTGCGGTTGTCACAGT
GAAGTGTGGCGGTCGGCCCCCTCCCTCATCCTCCTCCTCCAAGAAACGAA
GGAAAGGGGAGTCAGGACGGTACGGTCAGGGGGCAGGGAAGGCACTCCCT
CTTTCGGCTCCACACACCGGACCTACGAGCGGAGGAGGGGAGGGGGGACG
GACAAAGAGGAAGGACGGTGAGTCGGTTCTTTTGTCTGCGGCGGAACGGT
ATGCAGAGTGGAAGTCACAGGTGGTTATGGAGGAGGAGGAGGAGGAGTGG
GAGGAAAAGGGGGAGGGAGGGAGGGAGAGGAAGAGGAGAAGGAGTGCGGA
GGAGGGGACAGGGATGCATTCATCGGATTGCTCGTCGTTGTCGTCGTCGT
CGTCATCGTCGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGAGgtggag
aagagaaaaccttgtagtatcacccgatctcgtcggcgcaaccgtcgctc
cctccctccttcccaccattgctcctccagCCCCTCCTTCGCCTCTTCCC
CTTTCCCCCCCCCCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCA
CCTTCGCCATCGGTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCT
CCCTCCCTCCCTCCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTG
CCGTCGAGCGGTAAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGC
TGAGGTATGCAGGGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATC
GAGCAGTCTTATCTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGA
GAGGGAATGGCTTGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATA
CCCGGAGGGCGTTTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGG
GAGCATGGCCTGTGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGT
GAAGGTGGGGAAGGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGG
CGAAGGCGGGAAGAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTG
ACGCGAGGGCAAGTGAAGGATAAGAAGGCGGGCTAGAGAGAGAGAAGAGG
GAGGGAAGGAGGGAGAGAGGGAGGAGGCAGAGGCGGAGAAGGAGGAGAAG
GAGGAGGAGGAGG
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protein sequence of NO22G01850.1

>NO22G01850.1-protein ID=NO22G01850.1-protein|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MEIIPPTTCKGFIIKLTITSYHFVQQQQQQQQQQQQQQHHNSPSATRNGW
SRGAPAREASNTGVISAAVVDLTGSSPSSSNGTSTTHPSSSSPLSSSLLP
ADPLLRRVHIGKCLQLLYPQIFSAGVLPTSSLPLTRVREAIFHGIQAVKY
SSLEAFRTEVRSLITTHACPKDCATALLNRVDHVVATARDVEMLYSHGQG
LPQARDDLFRCLGDYPSLREMERRKREGGRVGGRRRVAGGNGKGGREEEE
EEGEETSEGEQKGQSNNNAAAVVTVKCGGRPPPSSSSSKKRRKGESGRYG
QGAGKALPLSAPHTGPTSGGGEGGRTKRKDGESVLLSAAERYAEWKSQVV
MEEEEEEWEEKGEGGRERKRRRSAEEGTGMHSSDCSSLSSSSSSSEEEEE
EEEDDEPLLRLFPFPPPPLPLVLLSQPPPTFAIGLNHSSSSDPSLPPSLP
PYFTFRVGLPRCCRRAVKRLQTSCSLVVELRYAGKEGGREGGEGGIEQSY
LTLLEDPVLRPGEREWLVKARITALSRQHTRRAFSLWVDVSAFEQREHGL
CVSGVQTSAVRTVKVGKGGGGKESGGKEGAKAGREGMPLKRRSIVLTRGQ
VKDKKAG*
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Synonyms
Publications