NO22G01690.1, NO22G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01690.1
Unique NameNO22G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr22:489831..490376 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:489831..490376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01690.1 vs.
Match: EWM21522.1 (hypothetical protein Naga_100204g8 [Nannochloropsis gaditana])

HSP 1 Score: 206.1 bits (523), Expect = 9.400e-50
Identity = 110/181 (60.77%), Postives = 135/181 (74.59%), Query Frame = 0 
Query:    1 MGARGSKPAGEAMSAAAVQARRQAVARTAQPQGPPHGVTIEGTGPSSNPLP-PPPIAPPSSSAAVGVPPEYPRRSGAAQLETDDALIKIMNELGPAIKTTRMETPRKDMNKLMFAHQEKAHTLPEERLAAILRSRRDMPDEFDLGKVCETYGLKEKDMEKVIAALEVPRIVERKGDKYGYW 181
            MGARGSKPAGE MSAAAVQARRQAVA+ ++ Q  P GVTIEG  P++  LP PPP APPSS          P      QLE DD LI++MNELGPAIKT R++TPR+DMNK+M AHQ+K HTL E+ LA ILR+RR+ P++FD+GKVC  + LK + + KV+  +EVPRI+ER+G KYGYW
Sbjct:    1 MGARGSKPAGEVMSAAAVQARRQAVAQASRTQEAPSGVTIEGRSPNNQSLPLPPPSAPPSS---------IPSERAGNQLEADDTLIRMMNELGPAIKTARLQTPRRDMNKMMHAHQDKPHTLHEDTLALILRARREAPEKFDIGKVCAQHELKAETLAKVLEVIEVPRIIERQGQKYGYW 172
The following BLAST results are available for this feature:
BLAST of NO22G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21522.19.400e-5060.77hypothetical protein Naga_100204g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01690NO22G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01690.1NO22G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01690.1.cds1NO22G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01690.1 ID=NO22G01690.1|Name=NO22G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
ATGGGAGCCCGTGGTAGTAAACCCGCAGGAGAGGCCATGTCCGCCGCGGC
CGTGCAAGCCCGTCGACAAGCTGTCGCCCGTACGGCTCAACCACAAGGCC
CCCCACATGGAGTTACCATCGAAGGCACAGGCCCCAGCAGCAACCCTCTC
CCTCCTCCGCCAATTGCTCCTCCTTCCTCCTCCGCTGCAGTTGGCGTCCC
CCCAGAATACCCCCGGAGAAGTGGTGCTGCCCAGTTGGAGACAGATGATG
CCCTGATAAAAATAATGAATGAGCTAGGCCCTGCTATCAAGACTACAAGG
ATGGAGACGCCGAGAAAGGATATGAATAAGCTAATGTTCGCGCATCAAGA
GAAGGCGCATACATTGCCAGAAGAGAGACTAGCGGCCATTCTTCGGTCAC
GGAGGGACATGCCAGATGAATTTGATTTAGGAAAAGTGTGTGAGACGTAT
GGTTTGAAGGAGAAGGATATGGAAAAGGTGATTGCTGCGCTTGAGGTGCC
GAGGATAGTGGAAAGGAAGGGGGATAAGTATGGATACTGGGAGTGA
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protein sequence of NO22G01690.1

>NO22G01690.1-protein ID=NO22G01690.1-protein|Name=NO22G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGARGSKPAGEAMSAAAVQARRQAVARTAQPQGPPHGVTIEGTGPSSNPL
PPPPIAPPSSSAAVGVPPEYPRRSGAAQLETDDALIKIMNELGPAIKTTR
METPRKDMNKLMFAHQEKAHTLPEERLAAILRSRRDMPDEFDLGKVCETY
GLKEKDMEKVIAALEVPRIVERKGDKYGYWE*
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mRNA from alignment at chr22:489831..490376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01690.1 ID=NO22G01690.1|Name=NO22G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp|location=Sequence derived from alignment at chr22:489831..490376+ (Nannochloropsis oceanica)
ATGGGAGCCCGTGGTAGTAAACCCGCAGGAGAGGCCATGTCCGCCGCGGC
CGTGCAAGCCCGTCGACAAGCTGTCGCCCGTACGGCTCAACCACAAGGCC
CCCCACATGGAGTTACCATCGAAGGCACAGGCCCCAGCAGCAACCCTCTC
CCTCCTCCGCCAATTGCTCCTCCTTCCTCCTCCGCTGCAGTTGGCGTCCC
CCCAGAATACCCCCGGAGAAGTGGTGCTGCCCAGTTGGAGACAGATGATG
CCCTGATAAAAATAATGAATGAGCTAGGCCCTGCTATCAAGACTACAAGG
ATGGAGACGCCGAGAAAGGATATGAATAAGCTAATGTTCGCGCATCAAGA
GAAGGCGCATACATTGCCAGAAGAGAGACTAGCGGCCATTCTTCGGTCAC
GGAGGGACATGCCAGATGAATTTGATTTAGGAAAAGTGTGTGAGACGTAT
GGTTTGAAGGAGAAGGATATGGAAAAGGTGATTGCTGCGCTTGAGGTGCC
GAGGATAGTGGAAAGGAAGGGGGATAAGTATGGATACTGGGAGTGA
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Coding sequence (CDS) from alignment at chr22:489831..490376+

>NO22G01690.1 ID=NO22G01690.1|Name=NO22G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr22:489831..490376+ (Nannochloropsis oceanica)
ATGGGAGCCCGTGGTAGTAAACCCGCAGGAGAGGCCATGTCCGCCGCGGC
CGTGCAAGCCCGTCGACAAGCTGTCGCCCGTACGGCTCAACCACAAGGCC
CCCCACATGGAGTTACCATCGAAGGCACAGGCCCCAGCAGCAACCCTCTC
CCTCCTCCGCCAATTGCTCCTCCTTCCTCCTCCGCTGCAGTTGGCGTCCC
CCCAGAATACCCCCGGAGAAGTGGTGCTGCCCAGTTGGAGACAGATGATG
CCCTGATAAAAATAATGAATGAGCTAGGCCCTGCTATCAAGACTACAAGG
ATGGAGACGCCGAGAAAGGATATGAATAAGCTAATGTTCGCGCATCAAGA
GAAGGCGCATACATTGCCAGAAGAGAGACTAGCGGCCATTCTTCGGTCAC
GGAGGGACATGCCAGATGAATTTGATTTAGGAAAAGTGTGTGAGACGTAT
GGTTTGAAGGAGAAGGATATGGAAAAGGTGATTGCTGCGCTTGAGGTGCC
GAGGATAGTGGAAAGGAAGGGGGATAAGTATGGATACTGGGAGTGA
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Synonyms
Publications