NO22G01690, NO22G01690 (gene) Nannochloropsis oceanica

Overview
NameNO22G01690
Unique NameNO22G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr22:489831..490376 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:489831..490376 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G01690 vs. NCBI_GenBank
Match: EWM21522.1 (hypothetical protein Naga_100204g8 [Nannochloropsis gaditana])

HSP 1 Score: 199.1 bits (505), Expect = 1.200e-47
Identity = 103/180 (57.22%), Postives = 128/180 (71.11%), Query Frame = 0 
Query:    1 MGARGSKPAGEAMSAAAVQARRQAVARTAQPQGPPHGVTIEGTGPSSNPLPXXXXXXXXXXXXXGVPPEYPRRSGAAQLETDDALIKIMNELGPAIKTTRMETPRKDMNKLMFAHQEKAHTLPEERLAAILRSRRDMPDEFDLGKVCETYGLKEKDMEKVIAALEVPRIVERKGDKYGYW 181
            MGARGSKPAGE MSAAAVQARRQAVA+ ++ Q  P GVTIEG  P++  LP               P   P      QLE DD LI++MNELGPAIKT R++TPR+DMNK+M AHQ+K HTL E+ LA ILR+RR+ P++FD+GKVC  + LK + + KV+  +EVPRI+ER+G KYGYW
Sbjct:    1 MGARGSKPAGEVMSAAAVQARRQAVAQASRTQEAPSGVTIEGRSPNNQSLP--------LPPPSAPPSSIPSERAGNQLEADDTLIRMMNELGPAIKTARLQTPRRDMNKMMHAHQDKPHTLHEDTLALILRARREAPEKFDIGKVCAQHELKAETLAKVLEVIEVPRIIERQGQKYGYW 172
The following BLAST results are available for this feature:
BLAST of NO22G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21522.11.200e-4757.22hypothetical protein Naga_100204g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004092NSK004092Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01690.1NO22G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100204g8gene8908Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01690.1NO22G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01690 ID=NO22G01690|Name=NO22G01690|organism=Nannochloropsis oceanica|type=gene|length=546bp
ATGGGAGCCCGTGGTAGTAAACCCGCAGGAGAGGCCATGTCCGCCGCGGC
CGTGCAAGCCCGTCGACAAGCTGTCGCCCGTACGGCTCAACCACAAGGCC
CCCCACATGGAGTTACCATCGAAGGCACAGGCCCCAGCAGCAACCCTCTC
CCTCCTCCGCCAATTGCTCCTCCTTCCTCCTCCGCTGCAGTTGGCGTCCC
CCCAGAATACCCCCGGAGAAGTGGTGCTGCCCAGTTGGAGACAGATGATG
CCCTGATAAAAATAATGAATGAGCTAGGCCCTGCTATCAAGACTACAAGG
ATGGAGACGCCGAGAAAGGATATGAATAAGCTAATGTTCGCGCATCAAGA
GAAGGCGCATACATTGCCAGAAGAGAGACTAGCGGCCATTCTTCGGTCAC
GGAGGGACATGCCAGATGAATTTGATTTAGGAAAAGTGTGTGAGACGTAT
GGTTTGAAGGAGAAGGATATGGAAAAGGTGATTGCTGCGCTTGAGGTGCC
GAGGATAGTGGAAAGGAAGGGGGATAAGTATGGATACTGGGAGTGA
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protein sequence of NO22G01690.1

>NO22G01690.1-protein ID=NO22G01690.1-protein|Name=NO22G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGARGSKPAGEAMSAAAVQARRQAVARTAQPQGPPHGVTIEGTGPSSNPL
PPPPIAPPSSSAAVGVPPEYPRRSGAAQLETDDALIKIMNELGPAIKTTR
METPRKDMNKLMFAHQEKAHTLPEERLAAILRSRRDMPDEFDLGKVCETY
GLKEKDMEKVIAALEVPRIVERKGDKYGYWE*
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Synonyms
Publications