NO22G01560.1, NO22G01560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G01560.1
Unique Name	NO22G01560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2375
Alignment location	chr22:459139..461924 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:459139..461924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G01560.1 vs.
Match: EWM21495.1 (atp-dependent rna helicase mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 6.200e-147
Identity = 273/405 (67.41%), Postives = 321/405 (79.26%), Query Frame = 0

Query:    1 MLRCLPWRLYGYRRLGKTRVRRCSLLSSSSCSHPCFYTAALISPTMKAASQENMQCPSHHQQRAYRRTPAAVAAAAGAAARAKGAAKADRDRRQRRGRDAGQDL---EQMSDPYADFGAPHDWYSQARKLKRSLILHVGPTNAGKTHEALERLQAAASGIYCGPLRLLAWEVYEKLNMNGVLCELWTGQEVKEIEGSRHVSCTVEMADITRVYDVAVVDECQLLGDKERGWAWTRAILGLPAVELHLCGSPAFVEIVHELANELGDIVEVRKYERLSPLQPQREAVGSWAEIRPGDCVVAFSRKRLFQLKNEIEVATFPRMKCCIVYGGLPPEARREQARLFNEEGSGWNVLVASDAIGMGLNLSIGRIIFSSLEKYDGKTNRQLTHAEIKQIAGRAGRFKGKYE 403
            MLR + W + G++R    R++R  + + SSC  P        S    AA+  N+     ++   +R +   ++ A G AA    A  +       RG+   Q      Q+SDPYADFGAPH+WY QARKLKRSLILHVGPTN+GKTHEALER+Q AASGIYCGPLRLLAWEVYEKLN   V CELWTGQEVKE+EGSRH+SCTVEMAD++R YDVAVVDECQL+GDKERGWAWTR +LGLPA+E+HLCGSPAFVEIV ELA E+GD VEVR+Y RLSPL+PQ++AV SWAEI  GDCVVAFSRK+LF+LKNEIEVAT PRMKCCIVYGGLPPEARREQARLFNEEGSGWNV+VA+DAIGMGLNL+IGR+IFS+LEK+DGK +R+L+ AEIKQIAGRAGRF GK++
Sbjct:    1 MLRRVQWIIPGHKR----RLKRALIGTPSSCRPPH-------SGRPVAATIINILARRRNECILFRDS-LYLSTATGTAASTTPAHASTTSTGWSRGKGRRQTYVSEPQISDPYADFGAPHNWYVQARKLKRSLILHVGPTNSGKTHEALERMQRAASGIYCGPLRLLAWEVYEKLNSKDVPCELWTGQEVKEVEGSRHMSCTVEMADVSRTYDVAVVDECQLIGDKERGWAWTRVVLGLPAIEVHLCGSPAFVEIVQELAREIGDDVEVREYARLSPLKPQKKAVASWAEIEAGDCVVAFSRKKLFELKNEIEVATSPRMKCCIVYGGLPPEARREQARLFNEEGSGWNVMVATDAIGMGLNLAIGRVIFSALEKFDGKVDRRLSDAEIKQIAGRAGRFNGKFQ 393

The following BLAST results are available for this feature:

BLAST of NO22G01560.1 vs.

BLAST of NO22G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21495.1	6.200e-147	67.41	atp-dependent rna helicase mitochondrial-like prot...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G01560	NO22G01560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01560.1	NO22G01560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01560.1.cds1	NO22G01560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01560.1.cds2	NO22G01560.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01560.1.cds3	NO22G01560.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01560.1.cds4	NO22G01560.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:459139..461924+
coding sequence from alignment at chr22:459139..461924+

mRNA sequence

>NO22G01560.1 ID=NO22G01560.1|Name=NO22G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp
GACGACAACCTCCCCGGCCCATCAGGAAAAGTCGTCAACTACACTCCTCT
GCTTCGCTCCACTATATACCACAACGACAGCGTTCGCTCACTACTACTCC
CCAACAATCTCATTCGTAGGCTTAGCCATGCTGCGGTGCTTGCCGTGGAG
ACTTTACGGCTACCGAAGGCTGGGAAAGACCCGCGTGAGAAGATGCTCCT
TGCTATCGTCATCGTCTTGCAGCCACCCCTGCTTCTATACGGCTGCCTTG
ATAAGCCCAACAATGAAAGCAGCAAGCCAAGAGAACATGCAATGCCCTAG
CCATCATCAGCAGCGCGCGTATCGCAGGACTCCTGCCGCCGTTGCCGCCG
CAGCCGGAGCCGCTGCCAGAGCAAAAGGAGCGGCCAAAGCGGACCGCGAC
CGTCGTCAAAGGCGTGGTAGAGATGCTGGGCAGGATCTAGAGCAAATGTC
TGACCCTTACGCTGATTTTGGTGCCCCACACGATTGGTACTCTCAAGCCC
GAAAGCTCAAGCGGAGCTTGATTTTGCACGTCGGGCCGACCAACGCAGGC
AAGACGCACGAGGCACTCGAACGGTTGCAGGCTGCGGCAAGTGGCATCTA
TTGCGGTCCCTTGCGGTTGCTCGCGTGGGAGGTGTATGAGAAGTTAAATA
TGAATGGTGTGCTCTGCGAGCTGTGGACGGGACAGGAAGTGAAGGAGATT
GAAGGGAGTCGGCACGTGAGCTGCACAGTCGAGATGGCAGACATAACAAG
GGTGTATGACGTGGCTGTGGTGGATGAGTGCCAGTTATTGGGAGACAAAG
AGAGAGGCTGGGCCTGGACAAGGGCCATCTTAGGCTTACCTGCCGTGGAG
CTGCACTTGTGTGGCTCACCTGCCTTTGTTGAGATTGTGCACGAGCTTGC
GAATGAATTGGGAGATATTGTGGAAGTCCGCAAATATGAACGCTTAAGCC
CTCTGCAACCACAAAGAGAAGCTGTGGGGAGTTGGGCAGAGATAAGGCCT
GGTGACTGCGTGGTGGCGTTTAGTCGGAAGAGGCTCTTTCAGCTGAAGAA
TGAGATTGAGGTTGCGACATTTCCGAGGATGAAGTGTTGCATTGTGTATG
GGGGATTGCCCCCGGAGGCCAGGAGGGAGCAGGCACGGCTTTTCAATGAG
GAGGGGAGTGGGTGGAATGTGCTGGTGGCGAGTGATGCGATCGGCATGGG
CCTTAATCTTTCCATCGGCCGAATTATCTTCTCCTCTCTTGAAAAGTATG
ACGGCAAAACCAATCGTCAATTGACCCATGCAGAGATCAAGCAAATCGCT
GGGAGGGCCGGCCGATTTAAGGGAAAGTACGAGATAGGAACAGTTGCAGG
CCGGGAAGGCGGAGACGTCCGCATCATCTCCCGCGCATTGAAAGCGGAGC
ACGACGTGATCGAGTCGGCGGGCCTAAAGCCCTCCAAAGAACAGTTGCTG
ATGTTCGCCAAAGCCAATGGATTGAAGATAAGAGAGACCGAAGAAGATTA
TGCGATGGCTTGGGAAGAGAAACGGCAAGGCGGTGAAGGAAGGAGGGAGG
AAGAAAGAGGAGGAGGAACCCCGAGTAGCTACACAGAATTCACTGTCTTG
CTCAAATTATTTGTCCACGCCGCGTCTACCCTCGGCTCCCGGGCCCAGGA
CCTTTATTTCCTGTGTGACCTTACTGACATGCTCGGGGTTGCGAGACTCA
TCGAAGAAATACCCCTGAATTTCAAAGACCGCTTCACCTTCTGTATCGCC
CCTGTGGACACCAAGCAAGCCGAGCTTATGTCTTACCTTCGTTTTTTCGC
CCGGCAGTACCAACACAAAAAAGAAGTTAAATTGGGTGTGAATGTACACT
GGGAAAAAGTACCTGTCACACCGTTGGAACTCAAGCACTTGGAAGAAATT
CATGCGGTGGTCGATGTGTATTTATGGCTAGGCCTGAGATTTGGCGAGGA
CATTTTTATAGAAATAGAGGACGCGGAGGAGGCTGCGGAACGATGCAGTG
AATTGATCGAGGAGGGCTTGAAGAAGCTGAAGCCCAAGGAGTTCATGCTG
GTGGGGGAAAAAAGAGGCGGAGGAAAGGAAGGAGACAGGGAGGGGGGGAG
GATGGGGTCATCCAGGCAACGGGGGGCGCCGTCCGGACGATGGAGAAAGG
GAGGTGAAAAGAGATAGATTAAGGGAGGGAAGAAGGGAAGTGTATATAAG
TGGGTAGGGATATAAGAAGATTTTAGATCATACCAAAGTTAACCACCCGG
TAAAGATAAATTTTAGCTTTGACATTTCTCGCGTGAATATTCTTACTGCT
GATTTAGGGCATTTTATCTACTCGTATTTGTGTTTGATTTTTCATCTTAT
ATGACATTTCGTTAGAAAATTACAT

protein sequence of NO22G01560.1

>NO22G01560.1-protein ID=NO22G01560.1-protein|Name=NO22G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MLRCLPWRLYGYRRLGKTRVRRCSLLSSSSCSHPCFYTAALISPTMKAAS
QENMQCPSHHQQRAYRRTPAAVAAAAGAAARAKGAAKADRDRRQRRGRDA
GQDLEQMSDPYADFGAPHDWYSQARKLKRSLILHVGPTNAGKTHEALERL
QAAASGIYCGPLRLLAWEVYEKLNMNGVLCELWTGQEVKEIEGSRHVSCT
VEMADITRVYDVAVVDECQLLGDKERGWAWTRAILGLPAVELHLCGSPAF
VEIVHELANELGDIVEVRKYERLSPLQPQREAVGSWAEIRPGDCVVAFSR
KRLFQLKNEIEVATFPRMKCCIVYGGLPPEARREQARLFNEEGSGWNVLV
ASDAIGMGLNLSIGRIIFSSLEKYDGKTNRQLTHAEIKQIAGRAGRFKGK
YEIGTVAGREGGDVRIISRALKAEHDVIESAGLKPSKEQLLMFAKANGLK
IRETEEDYAMAWEEKRQGGEGRREEERGGGTPSSYTEFTVLLKLFVHAAS
TLGSRAQDLYFLCDLTDMLGVARLIEEIPLNFKDRFTFCIAPVDTKQAEL
MSYLRFFARQYQHKKEVKLGVNVHWEKVPVTPLELKHLEEIHAVVDVYLW
LGLRFGEDIFIEIEDAEEAAERCSELIEEGLKKLKPKEFMLVGEKRGGGK
EGDREGGRMGSSRQRGAPSGRWRKGGEKR*

mRNA from alignment at chr22:459139..461924+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G01560.1 ID=NO22G01560.1|Name=NO22G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at chr22:459139..461924+ (Nannochloropsis oceanica)
GACGACAACCTCCCCGGCCCATCAGGAAAAGTCGTCAACTACACTCCTCT
GCTTCGCTCCACTATATACCACAACGACAGCGTTCGCTCACTACTACTCC
CCAACAATCTCATTCGTAGGCTTAGCCATGCTGCGGTGCTTGCCGTGGAG
ACTTTACGGCTACCGAAGGCTGGGAAAGACCCGCGTGAGAAGATGCTCCT
TGCTATCGTCATCGTCTTGCAGCCACCCCTGCTTCTATACGGCTGCCTTG
ATAAGCCCAACAATGAAAGCAGCAAGCCAAGAGAACATGCAATGCCCTAG
CCATCATCAGCAGCGCGCGTATCGCAGGACTCCTGCCGCCGTTGCCGCCG
CAGCCGGAGCCGCTGCCAGAGCAAAAGGAGCGGCCAAAGCGGACCGCGAC
CGTCGTCAAAGGCGTGGTAGAGATGCTGGGCAGGATCTAGAGCAAATGTC
TGACCCTTACGCTGATTTTGGTGCCCCACACGATTGGTACTCTCAAGCCC
GAAAGCTCAAGCGGAGCTTGATTTTGCACGTCGGGCCGACCAACGCAGGC
AAGACGCACGAGGCACTCGAACGGTTGCAGGCTGCGGCAAGTGGCATCTA
TTGCGGTCCCTTGCGGTTGCTCGCGTGGGAGGTGTATGAGAAGTTAAATA
TGAATGGTGTGCTCTGCGAGCTGTGGACGGGACAGGAAGTGAAGGAGATT
GAAGGGAGTCGGCACGTGAGCTGCACAGTCGAGATGGCAGACATAACAAG
GGTGTATGACGTGGCTGTGGTGGATGAGTGCCAGTTATTGGGAGACAAAG
AGGTACGTCCAAATTTTCTCTAGCGGTGATTGTTGCTCCTCTGTGCGTAC
ATGCAGTTGTCATTTTTATTTTGTTAATCCCTCCCTCCACCCCTCCCTCC
TCTCTCCGTCCCTACAGAGAGGCTGGGCCTGGACAAGGGCCATCTTAGGC
TTACCTGCCGTGGAGCTGCACTTGTGTGGCTCACCTGCCTTTGTTGAGAT
TGTGCACGAGCTTGCGAATGAATTGGGAGATATTGTGGAAGTCCGCAAAT
ATGAACGCTTAAGCCCTCTGCAACCACAAAGAGAAGCTGTGGGGAGTTGG
GCAGAGATAAGGCCTGGTGACTGCGTGGTGGCGTTTAGTCGGAAGAGGCT
CTTTCAGCTGAAGAATGAGATTGAGGTTGCGACATTTCCGAGGATGAAGT
GTTGCATTGTGTATGGGGGATTGCCCCCGGAGGCCAGGAGGGAGCAGGCA
CGGCTTTTCAATGAGGAGGGGAGTGGGTGGAATGTGCTGGTGGCGAGTGA
TGCGATCGGTGAGCGAGAAGCACGGAGGGAGGAAGGGAGGAGGGATTGAG
GGTTTGTCAGTTCTTTTTCGATATAAATATATGTCGTTATTACGGCCATT
TGATCGCCTCTTTGCGAGATATATCTTTCTCCATTATTTAATCTCTTTCC
TCTGCTCTCTTTCCCTCTTTCAATCACCCTCCTCCTCCTAGGCATGGGCC
TTAATCTTTCCATCGGCCGAATTATCTTCTCCTCTCTTGAAAAGTATGAC
GGCAAAACCAATCGTCAATTGACCCATGCAGAGATCAAGCAAATCGCTGG
GAGGGCCGGCCGATTTAAGGGAAAGTACGAGGTATGTCACACCAAAAATA
ATGAAATTAAGTCGAAAGAGAAAGGATTAGTTGCGGATACATATTTTCCC
TCAATCCCTTTCCCTTGTTTCTTTATTCCTCCCCTCGTCATCAGATAGGA
ACAGTTGCAGGCCGGGAAGGCGGAGACGTCCGCATCATCTCCCGCGCATT
GAAAGCGGAGCACGACGTGATCGAGTCGGCGGGCCTAAAGCCCTCCAAAG
AACAGTTGCTGATGTTCGCCAAAGCCAATGGATTGAAGATAAGAGAGACC
GAAGAAGATTATGCGATGGCTTGGGAAGAGAAACGGCAAGGCGGTGAAGG
AAGGAGGGAGGAAGAAAGAGGAGGAGGAACCCCGAGTAGCTACACAGAAT
TCACTGTCTTGCTCAAATTATTTGTCCACGCCGCGTCTACCCTCGGCTCC
CGGGCCCAGGACCTTTATTTCCTGTGTGACCTTACTGACATGCTCGGGGT
TGCGAGACTCATCGAAGAAATACCCCTGAATTTCAAAGACCGCTTCACCT
TCTGTATCGCCCCTGTGGACACCAAGCAAGCCGAGCTTATGTCTTACCTT
CGTTTTTTCGCCCGGCAGTACCAACACAAAAAAGAAGTTAAATTGGGTGT
GAATGTACACTGGGAAAAAGTACCTGTCACACCGTTGGAACTCAAGCACT
TGGAAGAAATTCATGCGGTGGTCGATGTGTATTTATGGCTAGGCCTGAGA
TTTGGCGAGGACATTTTTATAGAAATAGAGGACGCGGAGGAGGCTGCGGA
ACGATGCAGTGAATTGATCGAGGAGGGCTTGAAGAAGCTGAAGCCCAAGG
AGTTCATGCTGGTGGGGGAAAAAAGAGGCGGAGGAAAGGAAGGAGACAGG
GAGGGGGGGAGGATGGGGTCATCCAGGCAACGGGGGGCGCCGTCCGGACG
ATGGAGAAAGGGAGGTGAAAAGAGATAGATTAAGGGAGGGAAGAAGGGAA
GTGTATATAAGTGGGTAGGGATATAAGAAGATTTTAGATCATACCAAAGT
TAACCACCCGGTAAAGATAAATTTTAGCTTTGACATTTCTCGCGTGAATA
TTCTTACTGCTGATTTAGGGCATTTTATCTACTCGTATTTGTGTTTGATT
TTTCATCTTATATGACATTTCGTTAGAAAATTACAT

Coding sequence (CDS) from alignment at chr22:459139..461924+

>NO22G01560.1 ID=NO22G01560.1|Name=NO22G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr22:459139..461924+ (Nannochloropsis oceanica)
ATGCTGCGGTGCTTGCCGTGGAGACTTTACGGCTACCGAAGGCTGGGAAA
GACCCGCGTGAGAAGATGCTCCTTGCTATCGTCATCGTCTTGCAGCCACC
CCTGCTTCTATACGGCTGCCTTGATAAGCCCAACAATGAAAGCAGCAAGC
CAAGAGAACATGCAATGCCCTAGCCATCATCAGCAGCGCGCGTATCGCAG
GACTCCTGCCGCCGTTGCCGCCGCAGCCGGAGCCGCTGCCAGAGCAAAAG
GAGCGGCCAAAGCGGACCGCGACCGTCGTCAAAGGCGTGGTAGAGATGCT
GGGCAGGATCTAGAGCAAATGTCTGACCCTTACGCTGATTTTGGTGCCCC
ACACGATTGGTACTCTCAAGCCCGAAAGCTCAAGCGGAGCTTGATTTTGC
ACGTCGGGCCGACCAACGCAGGCAAGACGCACGAGGCACTCGAACGGTTG
CAGGCTGCGGCAAGTGGCATCTATTGCGGTCCCTTGCGGTTGCTCGCGTG
GGAGGTGTATGAGAAGTTAAATATGAATGGTGTGCTCTGCGAGCTGTGGA
CGGGACAGGAAGTGAAGGAGATTGAAGGGAGTCGGCACGTGAGCTGCACA
GTCGAGATGGCAGACATAACAAGGGTGTATGACGTGGCTGTGGTGGATGA
GTGCCAGTTATTGGGAGACAAAGAGAGAGGCTGGGCCTGGACAAGGGCCA
TCTTAGGCTTACCTGCCGTGGAGCTGCACTTGTGTGGCTCACCTGCCTTT
GTTGAGATTGTGCACGAGCTTGCGAATGAATTGGGAGATATTGTGGAAGT
CCGCAAATATGAACGCTTAAGCCCTCTGCAACCACAAAGAGAAGCTGTGG
GGAGTTGGGCAGAGATAAGGCCTGGTGACTGCGTGGTGGCGTTTAGTCGG
AAGAGGCTCTTTCAGCTGAAGAATGAGATTGAGGTTGCGACATTTCCGAG
GATGAAGTGTTGCATTGTGTATGGGGGATTGCCCCCGGAGGCCAGGAGGG
AGCAGGCACGGCTTTTCAATGAGGAGGGGAGTGGGTGGAATGTGCTGGTG
GCGAGTGATGCGATCGGCATGGGCCTTAATCTTTCCATCGGCCGAATTAT
CTTCTCCTCTCTTGAAAAGTATGACGGCAAAACCAATCGTCAATTGACCC
ATGCAGAGATCAAGCAAATCGCTGGGAGGGCCGGCCGATTTAAGGGAAAG
TACGAGATAGGAACAGTTGCAGGCCGGGAAGGCGGAGACGTCCGCATCAT
CTCCCGCGCATTGAAAGCGGAGCACGACGTGATCGAGTCGGCGGGCCTAA
AGCCCTCCAAAGAACAGTTGCTGATGTTCGCCAAAGCCAATGGATTGAAG
ATAAGAGAGACCGAAGAAGATTATGCGATGGCTTGGGAAGAGAAACGGCA
AGGCGGTGAAGGAAGGAGGGAGGAAGAAAGAGGAGGAGGAACCCCGAGTA
GCTACACAGAATTCACTGTCTTGCTCAAATTATTTGTCCACGCCGCGTCT
ACCCTCGGCTCCCGGGCCCAGGACCTTTATTTCCTGTGTGACCTTACTGA
CATGCTCGGGGTTGCGAGACTCATCGAAGAAATACCCCTGAATTTCAAAG
ACCGCTTCACCTTCTGTATCGCCCCTGTGGACACCAAGCAAGCCGAGCTT
ATGTCTTACCTTCGTTTTTTCGCCCGGCAGTACCAACACAAAAAAGAAGT
TAAATTGGGTGTGAATGTACACTGGGAAAAAGTACCTGTCACACCGTTGG
AACTCAAGCACTTGGAAGAAATTCATGCGGTGGTCGATGTGTATTTATGG
CTAGGCCTGAGATTTGGCGAGGACATTTTTATAGAAATAGAGGACGCGGA
GGAGGCTGCGGAACGATGCAGTGAATTGATCGAGGAGGGCTTGAAGAAGC
TGAAGCCCAAGGAGTTCATGCTGGTGGGGGAAAAAAGAGGCGGAGGAAAG
GAAGGAGACAGGGAGGGGGGGAGGATGGGGTCATCCAGGCAACGGGGGGC
GCCGTCCGGACGATGGAGAAAGGGAGGTGAAAAGAGATAG

Synonyms

Publications