NO22G01540, NO22G01540 (gene) Nannochloropsis oceanica

Overview
NameNO22G01540
Unique NameNO22G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1948
Alignment locationchr22:453738..455685 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:453738..455685 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G01540 vs. NCBI_GenBank
Match: EWM21444.1 (hypothetical protein Naga_100019g76 [Nannochloropsis gaditana])

HSP 1 Score: 96.7 bits (239), Expect = 7.200e-17
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 0 
Query:    7 RALTSLKDFTHAPNSSAALEKLLHGEGVNYDGLRKMLKNIGEEKPERLSKSQVTRTVERYFKSGTFTLNSIRRAV 82
            R+L  L+D THAPN   AL+ LL+G+ VNY  LRKMLK IGEEK +R SKSQVTRTVERY KSG  +++ IR+AV
Sbjct:    8 RSLAELEDHTHAPNDRTALQGLLYGDQVNYRSLRKMLKEIGEEKSDRFSKSQVTRTVERYLKSGALSIDDIRKAV 82
The following BLAST results are available for this feature:
BLAST of NO22G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21444.17.200e-1764.00hypothetical protein Naga_100019g76 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01540.1NO22G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100019g76gene8919Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01540.1NO22G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01540 ID=NO22G01540|Name=NO22G01540|organism=Nannochloropsis oceanica|type=gene|length=1948bp
ATTTCAACAGACAGCGAGCGTCTCAACATTTGATGCCGCTGCTAGCCCTT
AGCTACCTGATCCATTCCGGCTAAGTCGTTCGTAACACCCGTACTGTTGT
CCCATGTAAAATTTGCCCGAATCGAGATAAGCTCGGGAGGGAGGGGATGG
TGGCGGCTGAGCCAAAGGTCCGTTTTGGTAGGGGAGAGCCTGAAACAGAG
CCCCAGCCGGTGGAGAGTGGAGAGCGGATGCCATGGGCATGTTTTGCTGC
GTGACCTGTGGGCCAAGATAGAGCGCCCACGCATCTTTGTGCTTGCAATA
AACTTTTTGCTTAGTCTGTAGTGCATATCGGAGGCTGCGTGGCAAGTGTT
TGAGTGGTTTTTGCACAGGCGGCGGACGAAACTCCTACACCTCGCAGGCA
CCTCAATGCACACTTGCGCATTCTACCATCGCAGCGATCTTCTCCCTGAA
CACGCACAATCCCTACACAATCTTAGATCTCGCCTTGAAAGGGCAACTCC
AATTCCTCCCGTCAACCTTTTACAACAGAGACAAGGATGAGCACCGCCGG
GAAACGCGCCTTGACGTCTTTGAAAGACTTCACCCACGCACCCAACAGCA
GCGCTGCTCTGGAAAAGTTACTGCATGGCGAAGGTGTCAATTACGATGGC
CTCCGgtacgttttcttgtgtgtccttggtcgagcgagcgaagcgtgatg
tggaatagggcctatgctgccgagcttccatgcgcctgtgcccgcgtttt
agatcccccaggcacaagtttattctgaatttcgtatttcttcaccacct
taagttcacatacactcattcatgcaattcaacctcatgtaatcgcacga
aatccatccatttacagCAAAATGCTGAAGAATATTGGCGAGGAGAAGCC
CGAGCGCCTCTCAAAGTCGCAAGTCACCCGCACTGTCGAGgtacgtctat
taccatgtttgtgagtacgtaaatttgaattcatttaagttttccctttc
aaaatatagaagtcttatacttttgtgcatgaaatctcccttcggcacac
tcaagggagagacagccttctcacctcttggctccttccaacccttccca
actcctatatagCGTTACTTCAAATCTGGAACTTTTACCCTCAATTCGAT
AAGAAGAGCAGTTGGGGTCCCTCGACAGGACGACGAGGACATGGAGGAGA
AGGAGGAGGAAGAGGAAGAAGAACAGGTAATGGCAAAGAAGCCCGCGGCG
AAGGCCAATACAAAGTTCTCTTTTACTGCTCCTACCAAGGGCGGCGGTAA
GAAGAGAGCGAAGACAGCAGCAGCAGAATTAGCATCAGCGGAGCCAGAGA
GGCAGAGTTCGGGCGTGCTTGCTTATATTTCGAACCTATTTTCACCGTCC
AAGAAGTAGGAGAGAAAGAGAGGGAGGGAAGGAGGGAGGGAGGGAAGAAG
AGAGTGTGAGGCACGAACGATGCGGGTGTATGTGTAGATGCCGTAGAGCG
GGGACCACGCGATTGATGACAAGATATACTAGGCAGCCTGAGAGAGGATG
TAGTACAAAAGCAAGCGAAGGGGAAGGAACAAAAGCAAGCGAAGGGGAAG
GAAGGAAGGAAAAAAGGAAGGAGAGAGATAAGAAAGAGGAGCAGGACTGT
TTGTGAAGACCGACATCACACGCATGGAGAAAGCCGTCAAAGAATGCGCG
CTCTGTCCACTGCCGCCCGGTCTCTCAAGAGAGTTGGGATATGGGTGAGG
AAATGAAGAAAAGAGAGTGACTGTAAAAAGAAAATCAGAAGGCTCACGCT
GCGTACAGCCAGCAAGAGAAACAGACGACTAGACCACCAGCGACGACGAT
GGAAAGGGCTTGTTGCGACGCAGGGAAAGGAGGGAGAGGAAGGACCAAAG
ATATGAAAAAGTATGACCATTGAATGATATAAACATAACATAGAGGAA
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protein sequence of NO22G01540.1

>NO22G01540.1-protein ID=NO22G01540.1-protein|Name=NO22G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MSTAGKRALTSLKDFTHAPNSSAALEKLLHGEGVNYDGLRKMLKNIGEEK
PERLSKSQVTRTVERYFKSGTFTLNSIRRAVGVPRQDDEDMEEKEEEEEE
EQVMAKKPAAKANTKFSFTAPTKGGGKKRAKTAAAELASAEPERQSSGVL
AYISNLFSPSKK*
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Synonyms
Publications