NO22G01380.2, NO22G01380.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01380.2
Unique NameNO22G01380.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2464
Alignment locationchr22:410422..412957 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:410422..412957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G01380.2 vs.
Match: EWM21463.1 (hypothetical protein Naga_100019g57 [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 6.800e-62
Identity = 220/604 (36.42%), Postives = 306/604 (50.66%), Query Frame = 0 
Query:    1 MLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHPPPPPSPAPAPPEPRWNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPEG-----QLGLTLVLEPMVFKRVHPPFALLQHLSNQH--QQNMDGKKQHQQQQKVEADAPDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTPLEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGCASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTSILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRDEEQERGGRKEGG----MVILVGGGARAAAPADAAVKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPSPAQK-----NKKKGLTLLPPSVTAPLSFPTSHTNSSS-----LARQQQEDG---EGSSSNNNNNIYDDDKEQEDDNLISNQLTGTSA--GVFPPPSSSFSSSATKKTLPPPPLLPPAMDQAPFNNSDRNTDEKPKKKT--MKEKMVPAQTLDQVLGVSAELT-TG---------TSIKKKALPMTKLKKALDGGGEKKAAAKKAKTK 567
            +L + L++R+L  +GW RI+DDVY  H+DLFP            +    + +  +G    + DFVEA K++V +N R+T  PW         Q+GLT+ LEPMVFKR+ PPF  L+ L+ QH  QQ+  G+    Q Q  +    DE+G+  G  +FPP EAVLEMRAV+ LP+LT  G L SLP+P +E+TPLEK N +HG+D E PRDE ++R FWRL H + LP  PL YVRV+  G G  S  YP  CLVS F HNYSR+TQAY++L  TFL LL   P V +  T      SSSS  PVG+ L+SP+K    A KTARQLRD  +E  GR   G    +   V    +A+        +++ P  SSSS  SSP    A  S+   + K+ + A +      +      + P  T   S  T+  +SS      L      DG   E  ++   +++  D    E        LT +S+  GV     S  +S+ T  T  P  ++ P+  Q P ++S  +  ++ KK       K   A+ L +   +S+ L  TG          SIK K+     LKK  +      A   K + K
Sbjct:  117 LLGQRLLSRFLIDQGWCRIFDDVYTSHTDLFPR---------YTSNCSEKLDMREGKLARR-DFVEAVKVVVLLNTRTTN-PWREHSETANCQIGLTISLEPMVFKRIRPPFDDLKLLATQHHVQQSQRGRLMSSQNQ--QDYVRDEDGVYSGRDVFPPDEAVLEMRAVKVLPDLTKTGFLVSLPTPNIEITPLEKINTQHGFDAEVPRDEVALRRFWRLTHGIELPAEPLTYVRVIFEGQGRTSTIYPTLCLVSQFVHNYSRTTQAYSQLCQTFLRLLRDFPSVLRLSTDF----SSSSGGPVGRRLSSPEKSGLSAFKTARQLRDSIKE--GRPHVGDNARLQKYVALATQASKKPSTNPFSSVLPSFSSSSNPSSPLLPHAIGSQSICSSKRTAKAARALSDPPETMNSVKVSPPPTLKFSSRTADVHSSESSAAFLTSSSSPDGVSFESGAAFLTSSLSLDGVSSESSAAF---LTSSSSPDGVDCEHVSDATSTCTSATSAPSKMI-PSRHQPPRSDSKTDWVDEAKKSNGFQVSKTTHAEPLLERKAISSSLAMTGKKKGHTVREISIKTKSRGYESLKKQKEQANRNNAQNHKTRAK 697
The following BLAST results are available for this feature:
BLAST of NO22G01380.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21463.16.800e-6236.42hypothetical protein Naga_100019g57 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01380NO22G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01380.2NO22G01380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01380.2.cds1NO22G01380.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01380.2.cds2NO22G01380.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01380.2 ID=NO22G01380.2|Name=NO22G01380.2|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp
CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA
TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC
ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC
AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGTAAGAAACGATCTTG
TATACCTTCTAGTCCTTCGTAGTACTCCTCTTCTTCTCGTCCCTTTCTTG
TTCCTCCCTCCTCCCATTTGCCTCACTTTACTTATAATTTGTGATTTTTT
TCCCTCACCCGTTTCTCGCTTATCCTCCTTCTCCTTCATCGCCTCTTCCC
TCCTCCCTCTCCTCGTCCCCCTCATCATCCCTTCCCTTCACCACACCTCA
ACCCACGCGCGCGCAGGCCAATGCTTTAGAAGAACAAGAACATTCCCGCG
GGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGAGCCCTTGAAT
CAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGGCCGATGTCCG
CTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTGGAGCTTGGAA
GCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGCCGAACATTTG
ATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCTACGATGACGT
TTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCTCCTCCTCCTC
CTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGAGGAGGATGGG
GACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAATCATAGTTTC
CATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAAGGACAACTTG
GCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGTCCATCCCCCC
TTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAAATATGGACGG
TAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGACGCACCCGATG
AGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGGTGAGGCCGTG
CTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCACTTTAGGACT
GCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCCTTGGAAAAGG
CGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGATGAAAAAAGC
ATGCGCGATTTTTGGCGCCTCGCGCACTCCCTCCCCCTTCCCCCCCACCC
TCTCGACTACGTCCGCGTCTTGGTCAGGGGTCATGGCTGCGCCTCCATCA
CATACCCAGCCGCCTGTCTCGTCTCTCACTTCGCACACAACTATTCCCGC
AGCACGCAAGCCTATACCCGTCTGAGCTCTACCTTCCTTCACCTGCTTAC
CGCCCTCCCTGGGGTCACCAAAGCCTTCACTACCACCTCTATACTTCCCT
CCTCCTCCTCTCTTGTGCCCGTCGGTAAATGCCTGACCTCCCCCCAAAAA
GTAAGCCCCGGCGCCCTCAAAACTGCCAGGCAGCTGCGGGATGAGGAGCA
GGAACGAGGGGGGAGAAAAGAGGGAGGGATGGTTATCTTGGTAGGGGGAG
GGGCACGGGCAGCTGCTCCGGCAGACGCGGCAGTCAAAACCACCCTGTGT
CCCCCATCCTCTTCCTCCTCTCTTTTTTCTTCCCCTTCATTCTACGCGGC
ATCAATCTCGCGCAAGCCGCCCACTGTAAAGAAACCCAGTCCGGCTCAGA
AGAACAAGAAGAAGGGCTTAACCCTTCTTCCCCCTTCTGTCACTGCTCCC
TTGTCATTTCCGACGTCCCACACCAACTCCTCCTCCTTGGCACGCCAGCA
ACAAGAAGACGGCGAGGGCAGCAGCAGCAACAACAACAACAACATTTATG
ACGACGACAAAGAGCAGGAGGACGATAATTTGATTTCGAACCAGTTGACT
GGAACGTCGGCCGGCGTGTTTCCCCCTCCCTCCTCCTCTTTCTCCTCCTC
AGCTACCAAAAAGACTCTCCCGCCGCCCCCTCTTCTACCTCCTGCCATGG
ACCAGGCGCCGTTCAACAACAGCGACCGCAACACCGACGAAAAGCCAAAG
AAGAAGACTATGAAAGAGAAGATGGTGCCAGCCCAGACGCTAGATCAGGT
CCTTGGAGTAAGCGCTGAATTGACAACGGGTACATCAATAAAGAAAAAGG
CATTGCCCATGACTAAATTGAAGAAAGCCTTGGATGGTGGAGGGGAGAAA
AAAGCGGCTGCCAAGAAAGCCAAGACCAAGGCCTAGGTGAATTTTGAGTG
GCTTCGGAGAAAAGTGTCGGTGGACGGGACAGGATAAGAAACAACATAGC
TCTTGGGCAGTCCATGCATTGGCTCCAAGACTATTTGCTCGTTCATTCGC
TTTGATTTGGGTTG
back to top

protein sequence of NO22G01380.2

>NO22G01380.2-protein ID=NO22G01380.2-protein|Name=NO22G01380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHPPPPPSPAPAPPEPR
WNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPEGQLGLTLVLEPMVF
KRVHPPFALLQHLSNQHQQNMDGKKQHQQQQKVEADAPDEEGLCGGVGLF
PPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTPLEKANARHGYDTES
PRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGCASITYPAACLVSHF
AHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTSILPSSSSLVPVGKC
LTSPQKVSPGALKTARQLRDEEQERGGRKEGGMVILVGGGARAAAPADAA
VKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPSPAQKNKKKGLTLLP
PSVTAPLSFPTSHTNSSSLARQQQEDGEGSSSNNNNNIYDDDKEQEDDNL
ISNQLTGTSAGVFPPPSSSFSSSATKKTLPPPPLLPPAMDQAPFNNSDRN
TDEKPKKKTMKEKMVPAQTLDQVLGVSAELTTGTSIKKKALPMTKLKKAL
DGGGEKKAAAKKAKTKA*
back to top

mRNA from alignment at chr22:410422..412957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01380.2 ID=NO22G01380.2|Name=NO22G01380.2|organism=Nannochloropsis oceanica|type=mRNA|length=2536bp|location=Sequence derived from alignment at chr22:410422..412957+ (Nannochloropsis oceanica)
CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA
TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC
ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC
AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGTAAGAAACGATCTTG
TATACCTTCTAGTCCTTCGTAGTACTCCTCTTCTTCTCGTCCCTTTCTTG
TTCCTCCCTCCTCCCATTTGCCTCACTTTACTTATAATTTGTGATTTTTT
TCCCTCACCCGTTTCTCGCTTATCCTCCTTCTCCTTCATCGCCTCTTCCC
TCCTCCCTCTCCTCGTCCCCCTCATCATCCCTTCCCTTCACCACACCTCA
ACCCACGCGCGCGCAGGCCAATGCTTTAGAAGAACAAGAACATTCCCGCG
GGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGAGCCCTTGAAT
CAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGGCCGATGTCCG
CTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTGGAGCTTGGAA
GCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGCCGAACATTTG
ATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCTACGATGACGT
TTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCTCCTCCTCCTC
CTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGAGGAGGATGGG
GACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAATCATAGTTTC
CATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAAGGACAACTTG
GCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGTCCATCCCCCC
TTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAAATATGGACGG
TAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGACGCACCCGATG
AGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGGTGAGGCCGTG
CTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCACTTTAGGACT
GCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCCTTGGAAAAGG
CGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGATGAAAAAAGG
TACGGTGCTTGATCTTCCTTTGGCCTGCACGCCCTAACCCGTCCCTTCCC
ACCACTCTCCTTTCCCCACAGCATGCGCGATTTTTGGCGCCTCGCGCACT
CCCTCCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGG
GGTCATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCA
CTTCGCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCT
CTACCTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTC
ACTACCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAA
ATGCCTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCA
GGCAGCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGG
ATGGTTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGC
GGCAGTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTT
CTTCCCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTA
AAGAAACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCT
TCCCCCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACT
CCTCCTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGC
AACAACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAA
TTTGATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTC
CCTCCTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCC
CCTCTTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCG
CAACACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGC
CAGCCCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACG
GGTACATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGC
CTTGGATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCA
AGGCCTAGGTGAATTTTGAGTGGCTTCGGAGAAAAGTGTCGGTGGACGGG
ACAGGATAAGAAACAACATAGCTCTTGGGCAGTCCATGCATTGGCTCCAA
GACTATTTGCTCGTTCATTCGCTTTGATTTGGGTTG
back to top

Coding sequence (CDS) from alignment at chr22:410422..412957+

>NO22G01380.2 ID=NO22G01380.2|Name=NO22G01380.2|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr22:410422..412957+ (Nannochloropsis oceanica)
ATGTTGGCCGAACATTTGATGAATCGATATTTGGGGGCAAAAGGCTGGGT
TAGGATCTACGATGACGTTTATGCCCGCCACTCTGACCTCTTCCCTCATC
CTCATCCTCCTCCTCCTCCTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGA
TGGAACGAGGAGGATGGGGACAGTGGTGGTAAGGTCGACTTCGTAGAAGC
AGCCAAAATCATAGTTTCCATCAACATGCGCTCTACCCAAGAGCCTTGGT
CCCCTGAAGGACAACTTGGCCTCACCCTCGTCCTTGAGCCCATGGTGTTC
AAACGCGTCCATCCCCCCTTCGCCCTCCTTCAGCATCTTTCCAACCAGCA
CCAGCAAAATATGGACGGTAAGAAGCAGCATCAGCAACAGCAAAAAGTGG
AGGCCGACGCACCCGATGAGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTC
CCCCCGGGTGAGGCCGTGCTGGAAATGCGCGCTGTCAGGTTCCTGCCTGA
GCTGACCACTTTAGGACTGCTTGCCTCATTGCCCTCGCCCGTCTTGGAGC
TGACACCCTTGGAAAAGGCGAACGCTCGCCACGGCTACGACACTGAGTCC
CCGAGGGATGAAAAAAGCATGCGCGATTTTTGGCGCCTCGCGCACTCCCT
CCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGGGGTC
ATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCACTTC
GCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCTCTAC
CTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTCACTA
CCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAAATGC
CTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCAGGCA
GCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGGATGG
TTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGCGGCA
GTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTTCTTC
CCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTAAAGA
AACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCTTCCC
CCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACTCCTC
CTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGCAACA
ACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAATTTG
ATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTCCCTC
CTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCCCCTC
TTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCGCAAC
ACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGCCAGC
CCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACGGGTA
CATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGCCTTG
GATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCAAGGC
CTAG
back to top
Synonyms
Publications