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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:410422..412957 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01380.1 vs.
Match: EWM21463.1 (hypothetical protein Naga_100019g57 [Nannochloropsis gaditana]) HSP 1 Score: 353.2 bits (905), Expect = 1.800e-93 Identity = 281/720 (39.03%), Postives = 386/720 (53.61%), Query Frame = 0
Query: 1 MPLLHLEVKLPPVLTHLQECDELQVTFICLP-AAASRTAAFHLANALEEQEHSRGVLVLPLPAHNESE-PLNQILCFGGFPGVSEADVRYCATTCGLTVAAVELGSVNAVHERHLVMLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHPPPPPSPAPAPPEPRWNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPEG-----QLGLTLVLEPMVFKRVHPPFALLQHLSNQH--QQNMDGKKQHQQQQKVEADAPDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTPLEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGCASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTSILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRDEEQERGGRKEGG----MVILVGGGARAAAPADAAVKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPSPAQK-----NKKKGLTLLPPSVTAPLSFPTSHTNSSS-----LARQQQEDG---EGSSSNNNNNIYDDDKEQEDDNLISNQLTGTSA--GVFPPPSSSFSSSATKKTLPPPPLLPPAMDQAPFNNSDRNTDEKPKKKT--MKEKMVPAQTLDQVLGVSAELT-TG---------TSIKKKALPMTKLKKALDGGGEKKAAAKKAKTK 681
MPL+ +E+KLPP LT L E L VTFI L AS TAAFHLA ALEE+E SRG+LVLPLP N++E P+ ++LCFGG + +R AT CGLT+ A+ GS+ ++E +L++L + L++R+L +GW RI+DDVY H+DLFP + + + +G + DFVEA K++V +N R+T PW Q+GLT+ LEPMVFKR+ PPF L+ L+ QH QQ+ G+ Q Q + DE+G+ G +FPP EAVLEMRAV+ LP+LT G L SLP+P +E+TPLEK N +HG+D E PRDE ++R FWRL H + LP PL YVRV+ G G S YP CLVS F HNYSR+TQAY++L TFL LL P V + T SSSS PVG+ L+SP+K A KTARQLRD +E GR G + V +A+ +++ P SSSS SSP A S+ + K+ + A + + + P T S T+ +SS L DG E ++ +++ D E LT +S+ GV S +S+ T T P ++ P+ Q P ++S + ++ KK K A+ L + +S+ L TG SIK K+ LKK + A K + K
Sbjct: 1 MPLVDVEMKLPPSLTELDEDGSLSVTFISLDKTVASDTAAFHLATALEERERSRGLLVLPLPTTNDAERPVFELLCFGGLSKLPNGIIRNVATECGLTLEAITRGSLTVLNENYLLLLGQRLLSRFLIDQGWCRIFDDVYTSHTDLFPR---------YTSNCSEKLDMREGKLARR-DFVEAVKVVVLLNTRTTN-PWREHSETANCQIGLTISLEPMVFKRIRPPFDDLKLLATQHHVQQSQRGRLMSSQNQ--QDYVRDEDGVYSGRDVFPPDEAVLEMRAVKVLPDLTKTGFLVSLPTPNIEITPLEKINTQHGFDAEVPRDEVALRRFWRLTHGIELPAEPLTYVRVIFEGQGRTSTIYPTLCLVSQFVHNYSRTTQAYSQLCQTFLRLLRDFPSVLRLSTDF----SSSSGGPVGRRLSSPEKSGLSAFKTARQLRDSIKE--GRPHVGDNARLQKYVALATQASKKPSTNPFSSVLPSFSSSSNPSSPLLPHAIGSQSICSSKRTAKAARALSDPPETMNSVKVSPPPTLKFSSRTADVHSSESSAAFLTSSSSPDGVSFESGAAFLTSSLSLDGVSSESSAAF---LTSSSSPDGVDCEHVSDATSTCTSATSAPSKMI-PSRHQPPRSDSKTDWVDEAKKSNGFQVSKTTHAEPLLERKAISSSLAMTGKKKGHTVREISIKTKSRGYESLKKQKEQANRNNAQNHKTRAK 697
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01380.1 ID=NO22G01380.1|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGCCAATGCTTTAGAAG AACAAGAACATTCCCGCGGGGTCCTTGTCCTTCCTCTCCCTGCACACAAT GAAAGTGAGCCCTTGAATCAAATCCTCTGCTTCGGGGGTTTCCCAGGCGT CTCCGAGGCCGATGTCCGCTACTGCGCCACAACGTGCGGTTTGACCGTGG CAGCGGTGGAGCTTGGAAGCGTGAATGCTGTGCATGAGAGACACCTCGTT ATGTTGGCCGAACATTTGATGAATCGATATTTGGGGGCAAAAGGCTGGGT TAGGATCTACGATGACGTTTATGCCCGCCACTCTGACCTCTTCCCTCATC CTCATCCTCCTCCTCCTCCTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGA TGGAACGAGGAGGATGGGGACAGTGGTGGTAAGGTCGACTTCGTAGAAGC AGCCAAAATCATAGTTTCCATCAACATGCGCTCTACCCAAGAGCCTTGGT CCCCTGAAGGACAACTTGGCCTCACCCTCGTCCTTGAGCCCATGGTGTTC AAACGCGTCCATCCCCCCTTCGCCCTCCTTCAGCATCTTTCCAACCAGCA CCAGCAAAATATGGACGGTAAGAAGCAGCATCAGCAACAGCAAAAAGTGG AGGCCGACGCACCCGATGAGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTC CCCCCGGGTGAGGCCGTGCTGGAAATGCGCGCTGTCAGGTTCCTGCCTGA GCTGACCACTTTAGGACTGCTTGCCTCATTGCCCTCGCCCGTCTTGGAGC TGACACCCTTGGAAAAGGCGAACGCTCGCCACGGCTACGACACTGAGTCC CCGAGGGATGAAAAAAGCATGCGCGATTTTTGGCGCCTCGCGCACTCCCT CCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGGGGTC ATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCACTTC GCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCTCTAC CTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTCACTA CCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAAATGC CTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCAGGCA GCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGGATGG TTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGCGGCA GTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTTCTTC CCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTAAAGA AACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCTTCCC CCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACTCCTC CTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGCAACA ACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAATTTG ATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTCCCTC CTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCCCCTC TTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCGCAAC ACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGCCAGC CCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACGGGTA CATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGCCTTG GATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCAAGGC CTAGGTGAATTTTGAGTGGCTTCGGAGAAAAGTGTCGGTGGACGGGACAG GATAAGAAACAACATAGCTCTTGGGCAGTCCATGCATTGGCTCCAAGACT ATTTGCTCGTTCATTCGCTTTGATTTGGGTTG back to topprotein sequence of NO22G01380.1 >NO22G01380.1-protein ID=NO22G01380.1-protein|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp MPLLHLEVKLPPVLTHLQECDELQVTFICLPAAASRTAAFHLANALEEQE HSRGVLVLPLPAHNESEPLNQILCFGGFPGVSEADVRYCATTCGLTVAAV ELGSVNAVHERHLVMLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHP PPPPSPAPAPPEPRWNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPE GQLGLTLVLEPMVFKRVHPPFALLQHLSNQHQQNMDGKKQHQQQQKVEAD APDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTP LEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGC ASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTS ILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRDEEQERGGRKEGGMVIL VGGGARAAAPADAAVKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPS PAQKNKKKGLTLLPPSVTAPLSFPTSHTNSSSLARQQQEDGEGSSSNNNN NIYDDDKEQEDDNLISNQLTGTSAGVFPPPSSSFSSSATKKTLPPPPLLP PAMDQAPFNNSDRNTDEKPKKKTMKEKMVPAQTLDQVLGVSAELTTGTSI KKKALPMTKLKKALDGGGEKKAAAKKAKTKA* back to topmRNA from alignment at chr22:410422..412957+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01380.1 ID=NO22G01380.1|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2536bp|location=Sequence derived from alignment at chr22:410422..412957+ (Nannochloropsis oceanica) CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA
TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC
ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC
AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGTAAGAAACGATCTTG
TATACCTTCTAGTCCTTCGTAGTACTCCTCTTCTTCTCGTCCCTTTCTTG
TTCCTCCCTCCTCCCATTTGCCTCACTTTACTTATAATTTGTGATTTTTT
TCCCTCACCCGTTTCTCGCTTATCCTCCTTCTCCTTCATCGCCTCTTCCC
TCCTCCCTCTCCTCGTCCCCCTCATCATCCCTTCCCTTCACCACACCTCA
ACCCACGCGCGCGCAGGCCAATGCTTTAGAAGAACAAGAACATTCCCGCG
GGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGAGCCCTTGAAT
CAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGGCCGATGTCCG
CTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTGGAGCTTGGAA
GCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGCCGAACATTTG
ATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCTACGATGACGT
TTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCTCCTCCTCCTC
CTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGAGGAGGATGGG
GACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAATCATAGTTTC
CATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAAGGACAACTTG
GCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGTCCATCCCCCC
TTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAAATATGGACGG
TAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGACGCACCCGATG
AGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGGTGAGGCCGTG
CTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCACTTTAGGACT
GCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCCTTGGAAAAGG
CGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGATGAAAAAAGG
TACGGTGCTTGATCTTCCTTTGGCCTGCACGCCCTAACCCGTCCCTTCCC
ACCACTCTCCTTTCCCCACAGCATGCGCGATTTTTGGCGCCTCGCGCACT
CCCTCCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGG
GGTCATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCA
CTTCGCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCT
CTACCTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTC
ACTACCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAA
ATGCCTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCA
GGCAGCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGG
ATGGTTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGC
GGCAGTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTT
CTTCCCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTA
AAGAAACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCT
TCCCCCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACT
CCTCCTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGC
AACAACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAA
TTTGATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTC
CCTCCTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCC
CCTCTTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCG
CAACACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGC
CAGCCCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACG
GGTACATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGC
CTTGGATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCA
AGGCCTAGGTGAATTTTGAGTGGCTTCGGAGAAAAGTGTCGGTGGACGGG
ACAGGATAAGAAACAACATAGCTCTTGGGCAGTCCATGCATTGGCTCCAA
GACTATTTGCTCGTTCATTCGCTTTGATTTGGGTTG back to topCoding sequence (CDS) from alignment at chr22:410422..412957+ >NO22G01380.1 ID=NO22G01380.1|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at chr22:410422..412957+ (Nannochloropsis oceanica) ATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTCACGCACCT TCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCCAGCCGCAG CCAGCCGAACCGCCGCCTTTCATCTGGCCAATGCTTTAGAAGAACAAGAA CATTCCCGCGGGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGA GCCCTTGAATCAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGG CCGATGTCCGCTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTG GAGCTTGGAAGCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGC CGAACATTTGATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCT ACGATGACGTTTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCT CCTCCTCCTCCTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGA GGAGGATGGGGACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAA TCATAGTTTCCATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAA GGACAACTTGGCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGT CCATCCCCCCTTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAA ATATGGACGGTAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGAC GCACCCGATGAGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGG TGAGGCCGTGCTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCA CTTTAGGACTGCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCC TTGGAAAAGGCGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGA TGAAAAAAGCATGCGCGATTTTTGGCGCCTCGCGCACTCCCTCCCCCTTC CCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGGGGTCATGGCTGC GCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCACTTCGCACACAA CTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCTCTACCTTCCTTC ACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTCACTACCACCTCT ATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAAATGCCTGACCTC CCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCAGGCAGCTGCGGG ATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGGATGGTTATCTTG GTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGCGGCAGTCAAAAC CACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTTCTTCCCCTTCAT TCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTAAAGAAACCCAGT CCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCTTCCCCCTTCTGT CACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACTCCTCCTCCTTGG CACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGCAACAACAACAAC AACATTTATGACGACGACAAAGAGCAGGAGGACGATAATTTGATTTCGAA CCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTCCCTCCTCCTCTT TCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCCCCTCTTCTACCT CCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCGCAACACCGACGA AAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGCCAGCCCAGACGC TAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACGGGTACATCAATA AAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGCCTTGGATGGTGG AGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCAAGGCCTAG back to top
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