NO22G01370, NO22G01370 (gene) Nannochloropsis oceanica

Overview
NameNO22G01370
Unique NameNO22G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5548
Alignment locationchr22:404918..410465 -

Link to JBrowse

Properties
Property NameValue
DescriptionBRCT domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:404918..410465 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR036420BRCT_dom_sf
IPR001357BRCT_dom
IPR027640Kinesin-like_fam
IPR000253FHA_dom
Homology
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BLAST of NO22G01370 vs. NCBI_GenBank
Match: EWM21460.1 (BRCT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 226.9 bits (577), Expect = 4.500e-55
Identity = 132/258 (51.16%), Postives = 175/258 (67.83%), Query Frame = 0 
Query: 1161 KVAMTCVEADAETKRRIKSLGFSLVDELREADILIAGDRASGVAARRTAKVMGAVCSGLPLVDVSWLQASIKKGQAADTRAEEFIPDYLPPRHKVAVKLSAGTAVVGAADA-APFLKDWTVLAAFKSFGSGGVPPKADLRLIVECAGGAFYDKPSEFEAGQRKKGGRKGNILILSNEANLGLKTWGMEVREFASKHKEMVGGGDGEVYGLEVLLAGAMQQKLSLESHILWKAGETEKGKEEAQEEEVTQKVGRKKGAA 1418
            +VA++CVE +AE KR++++LG SLVD+LR+AD+LIAGD A+GVAARRTAKVM A+  GLPLVD SWL+ S K   A D R     P Y  P+          T V  +A   APFL+ W VLAAFKSFG  GVP K DLRLIVECAGG F+DKP + E+G+RKK  R+ ++LILSNE ++  KT G+EVR  A + K     G G VY LE LLAGAM+Q+L L  H+LW+  E ++ ++   +E+++ ++  K+  A
Sbjct:  112 RVAVSCVEPNAEMKRQLRALGLSLVDDLRQADLLIAGDGATGVAARRTAKVMSALSLGLPLVDYSWLRNSAKLSVAQDPRGHP--PSYKGPKTCADEMTDDRTTVQPSASVKAPFLEGWAVLAAFKSFGLNGVPSKGDLRLIVECAGGIFFDKPKDLESGRRKK-TRRSSLLILSNECSMAHKTLGIEVRRLAVEQK---AAGMG-VYYLEALLAGAMKQRLDLFDHVLWQWDENDEEEQTDGDEKISCRLRGKENKA 362
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BLAST of NO22G01370 vs. NCBI_GenBank
Match: EWM21457.1 (fha domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 94.0 bits (232), Expect = 4.500e-15
Identity = 52/132 (39.39%), Postives = 82/132 (62.12%), Query Frame = 0 
Query:   52 MATQRCDYLMEE-ESAEKSTQGEQEDHPTLAYLKVDGVPGE--AMRILKAGENTIGREPTNSIVLDHPGISDHHANLTLTDDGGIMFLKDLSA--NTWVFDTTQNIFRPEAFSIVKYGDKLRFGPVSAILTL 179
            M+TQR D+L+EE E+AE+ T    ++    A L    +PG+   + +L++GENTIGR   N ++LDHP IS+ HA +++ DD   MF+KD  +   TW++D  +  F+P + + ++ GD LR G + A L L
Sbjct:    1 MSTQRFDHLVEENETAERKTVPAVDECVISARLTFSDMPGQRKGVHLLESGENTIGRAAGNKVILDHPSISERHAIISVVDD--CMFIKDCGSTNRTWLWDAARGTFQPRSLARLRDGDYLRLGTLEAQLAL 130
The following BLAST results are available for this feature:
BLAST of NO22G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21460.14.500e-5551.16BRCT domain protein [Nannochloropsis gaditana][more]
EWM21457.14.500e-1539.39fha domain containing protein [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004124NSK004124Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01370.1NO22G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|104562gene_7143Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g56gene8938Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01370.1NO22G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01370 ID=NO22G01370|Name=NO22G01370|organism=Nannochloropsis oceanica|type=gene|length=5548bp
ATGGGCCTGTATAGTGAGGAAGGAGGAGGAGGAGGAGAAACTGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAAAGAGGAGAAAGAGGAGAAGAAGGAGGAAAgtagggacgcggg
catactgacggccaactaaagaaataacgcgtgattcaggaaaaaatagc
atggctttgtctgcgcctggccacctgagggtcttagaggaggaggttct
gggttttggcgccaacaagcgttttttaagcgatagaggcgaggcccccc
agcctccctcagtcattccccaatctcttgtcgtaaggatgtgccctcgc
actcatgcaaatttgagtggtgctcatgcgtgtctcatcacgcgcaagaa
tatgaagtcgacaagcgtatcttatcactctgcatcaggcaggcgcgcgt
tgtcggggtccaggtcatttcctccaaaacaagaggagagcaatcgagcg
aattgaactcatgaaataagggcggaggcaaagcgatgaaatcaagtcct
cgcatcccatcacacaaaaacacagCCATAGGCACGGAAACATGGCGACG
CAACGCTGTGACTATTTGATGGAGGAGGAGTCAGCGGAGAAGAGTACGCA
AGGTGAGCAGGAAGACCACCCGACGCTCGCATACCTAAAAGTGGATGGAG
TGCCCGGAGAAGCCATGCGGATCCTCAAGGCCGGGGAGAACACCATCGgt
aagtccgtgaatatgcactttagtcagagcgcgtgtatggcaagagggga
tgtgctggcctttgacagggaagcaacgcggtcgtctattttacacgtgg
gtaatctgtgcttttctcccgggcttggttgctccatgcagacacctcat
tgagtcctaaattcctcctttcccatctattcagGCCGCGAACCCACCAA
CAGCATTGTTCTAGACCATCCCGGCATCTCAGACCATCATGCCAACCTGA
CCCTTACCGACGACGGAGGCATCATGTTCCTCAAGGACCTAAGCGCCAAC
ACCTGGGTGTTCGACACAACCCAAAACATTTTCCGGCCCGAGGCGTTCTC
CATCGTAAAATATGGAGATAAACTCCGCTTTGGTCCCGTTTCGGCCATTC
TCACCCTCCCCGCCCGCGATGAGCAACAACAAGCCACCGTGATAGCCGCT
GAGGCCGTGCACCAGCAATCCCAGGAGCAGCAGCAGCAACAGGAGCAGCA
ACCACAACACCAAAGGGCAGGGAAAGACACTGCTGCTGTAGCGGCAGGAG
GAAATCAGTTTGGATTCGCTCTGCCCCTTCCTGGTGGTGGAGCTGTTGCT
GCTCCTGTCGCTGCTCCTTTTGTAACTTCTGAAGTTGCTGCTCCCCCGGC
GCCTGCTGCTCCTGTCCCTGCTCCTGCTGCTGTGCCTGCAACTGCCCTCC
CTACGCAGCCGATTGGCTTGAATTTGGAGGACGAAGGAATGGAGGAGCAA
AAAGAGGAAAGGGAGGAGATGGAGGACACGCAGGCGATTGAATCAGCGCC
CAGCCCTGTTTCGCCTGCTGCTTCTGCTGCTGCTACTGCTGCTGTTCGTG
CTGCTGCTGCTACTGCTACTGCTGTGGAGACGGTAAGGGGGGAAGGGAGG
CAAGACTTGGAGGAGAAAGGCACAGATACACGATTTGCGGAGGAGGACAA
GGGAGTGGGGGAGGGAGAGGCGACCACCGCTGTTGCTTTGACGGCGGCAG
AAGGgtcgctgagtgcatcgcaggaggcctgtgtcgtgggggacgccggt
aaggaagggggggagggggacgacgcgatggaggacgcatccaatgcctc
ttcagcagACATGATGGATGGATCGGGTGTTGTTGCAGAGGAGGAGTGGG
GGGAGGGGGGGCGGAGACGGAGAAAGAGGTGACTCCTGCCCACAGTCGCG
CTTCGACCCGTCCGCCAACTCCGGCCGAGGAGGAGGAAGAGGATGAGAAG
GATGAGCAGGGGGAGGACGTGGAGACGGATGATGAGTGCGAGGAGGAAGG
CGAAGGCCGCATGTCGCCTGCCATCGCTGCTGCTTCTACTGCCACGGAGA
AGGAGGAGGAGGAGGAGGAGGAAAAAGAGAAGGAGGGGAGGCCAGTACCA
CCCGCCCTATCTTGCAACCCCAGCAGCATTACAAACGAAGGAAAGGAAGG
TGGGAGGAGAGGAGGAGAAGCACAAGAAGAAGTGGAGGAGGAGGAAGGGA
CATCGCCGACAGCTGTGGCCCAACAGCCTGCTGAGGACGAAGAAATAAAG
GAAGTTGTAGATGAAGGGGAGGGAGAGGACCTGATGGCTGGAACAGCAGA
AGCAGCGAGGAAAGGGGAGGACGTAGAGCTTGCTTCTGTGGAGATGGAGG
AAGTAGAGGAACAGAAGGAGGAGCAAGAGGAGGAGGGAGGGTTTGgtgat
gatgtgccgacgaaggcatctgagggaatgtgttttgaggaggctgagac
gataccccctctcaggtacgcccagAAGGAAACGGAGGAGAGGGAGGAGG
AGGAGGAGGAGGGGGGGGGGGGGGGGGAGAGATGGCAGCGGTAGCAGCAG
CTTCCGTGGAAGCACCGGCCACAGCTGTTTCTGTTGCTCCTGCTGTTTCT
CCCATAAAGAAGGGGGGGAAGAACGAGGAGGGGGAACAGAGTAAGGAGGA
AATCTTCAGGACCGATCCTTTGCCTGTAGCTTCAAATGCTGCCCCTGCTT
CGTCTGCGGTAGAGGATGGAGGGGAAGGAGGGAGGGACAAAGCAGAGGCG
GAGGAGTTCGAGAAGTCGAAATCGAGGATTGCGGCCCATGTCTTCAGTCG
TCGTGAGGAAGAGGAGGAAGGGAGGGAGGGAGGGAAGAAATCGAGGGAAG
AGGAGGAAGTAGAGACAACTTTGCAGCCTGCTCCCGAGGCCACTGCAAAG
AAAGAGGACTACGGGGGCAAAGGGGAAGGGGAGGAGGCAGGGAGGGTCAC
ACCTATCCTTAAAGTACAATATGAAGCAGGAGATGTAGCAGTCGCTCCTC
CCATGCCTGCGGCTGCTCAAAGCCTTCAACCTCCTCGTGCTTCTGCTGCT
TCTCCTGTTGCATCCATCACGATGGGTAACGGCACTCCTGTACTGATCTA
CCCACCGCAGCAACAGCGAGAGGAGAAGGAAGGGGGAGAGGAGCAGCTGC
AGCAGCAGCAGGCCGGGACGGCAGAGATGTTTCGCGCGATAGTGGCGGAG
GGAGGGGAGGAAGGAAATGAGGAGGTGGACGGGACGTCCGCTAAGAAGGG
GCATCGTGGCGACACCGATGTGGAGTCTGAGAAGGAGAAGGAGGAGGGGG
GGGAGGAGGAAGACCAGCAGCAGCAGCGGCAGCCGCAACACCAAGTGGAG
CAGGAAGACGTGGTACTTGTCGTGCCCACGAAAAATGCTAAGGCTGCTGC
CGAGGAGGAGGAAACGACAGAAGAAGAGAAAGGGCAAGCGCCCTCTGCTC
CTGTCTCCTATCCTTCCCGCGGAGGTGGAGAAATAAGGAAGAGCGAAATA
CCTGCCCGAGCAGCAGTAGCAGCAGCAGCGACCCCCGCTACTGTCGGCAA
GGATGAGAAGAAAAAGGCAGTAGCGACGGCGACAGCGGGAGCATCACTAG
CAGCGGCAGCAGAATCCACGCTCAATATTGCGGAAAAGACGAAGGTTGGG
AAGAAGCGGGAGCAACAGGAAGAGGGGGAGGAGGGGACGGAGGAGCAGGA
CGTGCAGGTCGAACAGCCCAAATCTGCGAAGAAGAAGGCAGCGACGCCGA
AAGAAAAAACAGGAGCAGCGGTGGGAAGACAAGGCGACCTAAGGGAAGTG
CCCCCACCGAAAGCTATGGACAAGATGAAGGAGGGGAAGAAGAAGCAGGA
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAATGGAGGAGA
CAGAAGCTAAGCCTGCTATTGCTACATCCCGGCAGCTGGACCGTGCAGCA
GCAGCAGCAGCAGCAGGAGCGGCCAAAACAGTGATTGATCAGGAGACGAC
TTCGCCCTCCGCCGTTCCCTTTCATTATAAAAAGAAGCGCAAGGCGGAGG
AAATTGAGACCGGGAAGGAGGAAGAGAAAGCTTCCGTGCGCCGTCGTAGC
CGCACTGGGGCTACTCCTGCTGCACCTCGCGCTGCTGCAGCCGTAAGCAA
GGGAAAAGATAAGACAAAGGTGGGAGGTGTGACAGGGAGCTCAAGGGCAG
GAGGAGGATCATGGGTAGCGCAGAGTGCCGCTGCTTGGAAGGTGGCAATG
ACATGCGTGGAAGCGGACGCGGAGACGAAGCGACGGATCAAGAGCCTTGG
GTTCTCCCTCGTAGACGAATTGCGGGAGGCCGACATTTTGATCGCCGGGG
ATCGAGCTTCTGGAGTGGCTGCTCGACGCACGGCAAAGGTGATGGGTGCT
GTGTGCTCAGGCTTGCCACTGGTAGATGTCTCATGGTTGCAGGCCTCGAT
AAAGAAGGGGCAGGCCGCAGACACACGCGCGGAGGAGTTCATCCCTGATT
ACCTTCCTCCCCGACATAAAGTTGCCGTGAAGCTGTCCGCTGGTACTGCC
GTGGTAGGCGCTGCTGACGCAGCACCTTTCTTGAAGGACTGGACTGTCTT
GGCTGCCTTCAAGAGTTTTGGGAGTGGGGGTGTCCCGCCCAAGGCCGACT
TACGTCTGATTGTTGAGTGTGCCGGAGGTGCTTTCTATGACAAACCGTCG
GAGTTTGAGGCAGGGCAGAGGAAGAAGGGAGGAAGAAAGGGAAATATTTT
GATTTTATCAAACGAGGCGAATCTGGGTCTGAAAACATGGGGGATGGAGG
TGCGGGAATTTGCGAGTAAGCATAAGGAGATGGTGGGAGGGGGAGACGGG
GAGGTCTATGGCTTGGAGGTGTTGCTGGCGGGGGCGATGCAGCAGAAGTT
GAGTTTGGAAAGTCATATATTGTGGAAGGCGGGGGAGACGGAGAAAGGGA
AGGAGGAAGCACAGGAGGAGGAAGTAACCCAGAAGGTGGGAAGAAAGAAG
GGGGCGGCAGCTCCGGTGGTCGAGGCGAAGGGGAAGGGGAAGTCAAAGGT
AGCAGTTGCTCCGGCGATCGAGGCGAAGGGGAGCACGGGAAAAGTACAGA
AAGCGGTGGCAGCAGGAAAGAAGAGGGAAGTGGCGGAAGAGGAAGAAGAG
GAAGAGGAGGAGGAGGTAGGGGGGAAGGCCTCTCCTGCGGCGAAGAACGG
AAGGGCCACGGCTTCTACGGCAGCTGTCGAGAGAAAAGGTGCCACTTCGG
ATGCTGCCTCATCGATGCGCACCACCAGGGCGAAAGCAGCAGATGTGTCT
GCCGTCCCTGCTGCTACCATGTCCAAGCCCAAGCCAATTGCGGCCAGCAT
CACCATCAAAGGCAAGAAGGCATGTCCTATTCCTTCCAAGAAGCCACAGA
CCACGTCACCTGCTGTCGGGAAGAAGCGCGAGGCGGCTTCAGCTCTTGCG
TCTGCTCCGGCAGGAAAGCGTTCGACAAGAGCCCAATCCGCGAAGTAA
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protein sequence of NO22G01370.1

>NO22G01370.1-protein ID=NO22G01370.1-protein|Name=NO22G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1580bp
MGLYSEEGGGGGETGGGGGGGGGGGGGGGGGGGGGERGERGEEGGNHRHG
NMATQRCDYLMEEESAEKSTQGEQEDHPTLAYLKVDGVPGEAMRILKAGE
NTIGREPTNSIVLDHPGISDHHANLTLTDDGGIMFLKDLSANTWVFDTTQ
NIFRPEAFSIVKYGDKLRFGPVSAILTLPARDEQQQATVIAAEAVHQQSQ
EQQQQQEQQPQHQRAGKDTAAVAAGGNQFGFALPLPGGGAVAAPVAAPFV
TSEVAAPPAPAAPVPAPAAVPATALPTQPIGLNLEDEGMEEQKEEREEME
DTQAIESAPSPVSPAASAAATAAVRAAAATATAVETVRGEGRQDLEEKGT
DTRFAEEDKGVGEGEATTAVALTAAEGHDGWIGCCCRGGVGGGGAETEKE
VTPAHSRASTRPPTPAEEEEEDEKDEQGEDVETDDECEEEGEGRMSPAIA
AASTATEKEEEEEEEKEKEGRPVPPALSCNPSSITNEGKEGGRRGGEAQE
EVEEEEGTSPTAVAQQPAEDEEIKEVVDEGEGEDLMAGTAEAARKGEDVE
LASVEMEEVEEQKEEQEEEGGFEGNGGEGGGGGGGGGGGGEMAAVAAASV
EAPATAVSVAPAVSPIKKGGKNEEGEQSKEEIFRTDPLPVASNAAPASSA
VEDGGEGGRDKAEAEEFEKSKSRIAAHVFSRREEEEEGREGGKKSREEEE
VETTLQPAPEATAKKEDYGGKGEGEEAGRVTPILKVQYEAGDVAVAPPMP
AAAQSLQPPRASAASPVASITMGNGTPVLIYPPQQQREEKEGGEEQLQQQ
QAGTAEMFRAIVAEGGEEGNEEVDGTSAKKGHRGDTDVESEKEKEEGGEE
EDQQQQRQPQHQVEQEDVVLVVPTKNAKAAAEEEETTEEEKGQAPSAPVS
YPSRGGGEIRKSEIPARAAVAAAATPATVGKDEKKKAVATATAGASLAAA
AESTLNIAEKTKVGKKREQQEEGEEGTEEQDVQVEQPKSAKKKAATPKEK
TGAAVGRQGDLREVPPPKAMDKMKEGKKKQEKEEEEEEEEEEEEMEETEA
KPAIATSRQLDRAAAAAAAGAAKTVIDQETTSPSAVPFHYKKKRKAEEIE
TGKEEEKASVRRRSRTGATPAAPRAAAAVSKGKDKTKVGGVTGSSRAGGG
SWVAQSAAAWKVAMTCVEADAETKRRIKSLGFSLVDELREADILIAGDRA
SGVAARRTAKVMGAVCSGLPLVDVSWLQASIKKGQAADTRAEEFIPDYLP
PRHKVAVKLSAGTAVVGAADAAPFLKDWTVLAAFKSFGSGGVPPKADLRL
IVECAGGAFYDKPSEFEAGQRKKGGRKGNILILSNEANLGLKTWGMEVRE
FASKHKEMVGGGDGEVYGLEVLLAGAMQQKLSLESHILWKAGETEKGKEE
AQEEEVTQKVGRKKGAAAPVVEAKGKGKSKVAVAPAIEAKGSTGKVQKAV
AAGKKREVAEEEEEEEEEEVGGKASPAAKNGRATASTAAVERKGATSDAA
SSMRTTRAKAADVSAVPAATMSKPKPIAASITIKGKKACPIPSKKPQTTS
PAVGKKREAASALASAPAGKRSTRAQSAK*
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Synonyms
Publications