NO22G01160.2, NO22G01160.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01160.2
Unique NameNO22G01160.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1436
Alignment locationchr22:346790..348635 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:346790..348635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01160.2 vs.
Match: EWM21501.1 (abc transporter family protein [Nannochloropsis gaditana])

HSP 1 Score: 577.0 bits (1486), Expect = 3.600e-161
Identity = 279/317 (88.01%), Postives = 299/317 (94.32%), Query Frame = 0 
Query:    1 MATNTATQLKPEEDVAGPFLSDDAVLIRDLNFSYGDRQVLQGLNMRLKKGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVLGMHAFRDTKLNLVRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFDILLLDEVTVSLDVVVRQDLLRWLRKETEERGATVLYATHIFDGLDDWPSHLHFMTNQGKTGWQGKLEELDHYQELRKAGDPGPLLRIAERWLRTEIDVQKRQKRQEKELGAQAHDAKLARSTLSGGGYAAGRMYDVFHE 318
            M   T T LKPEEDV GPFL +DAVLIR+LNFSYGDR VL+G+NMRLK+GSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTV+GMHAFRDTKLNL+RAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPF+ILLLDEVTVSLDVVVRQDLLRWLR+ETE RGATV+YATHIFDGLDDWPSHLHFMTNQG+TGWQGKLE+LDHY+ELR+AGDPGPLLRIAERWLRTE + QKR+K +EKELG Q  D KL++ TLSGGG+AAGRMYD FHE
Sbjct:    1 MTDLTKTPLKPEEDVTGPFLPNDAVLIRELNFSYGDRPVLKGINMRLKRGSRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVMGMHAFRDTKLNLIRAYMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGIDPEWRMNRVSDGQRRRVQLFLGLVRPFEILLLDEVTVSLDVVVRQDLLRWLRRETEVRGATVIYATHIFDGLDDWPSHLHFMTNQGRTGWQGKLEDLDHYRELRRAGDPGPLLRIAERWLRTETEEQKRRKLREKELGTQVLDDKLSQPTLSGGGFAAGRMYDHFHE 317
The following BLAST results are available for this feature:
BLAST of NO22G01160.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21501.13.600e-16188.01abc transporter family protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01160NO22G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01160.2NO22G01160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01160.2.cds1NO22G01160.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01160.2.cds2NO22G01160.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01160.2.cds3NO22G01160.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01160.2 ID=NO22G01160.2|Name=NO22G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=1436bp
ATGTTTGTCGAGATTATCATATATACTAGATAACATAAAGCTCATCGTCG
CAGATTACGATGAGGTTTTCGTGCCGTGCGTCCGCTGTGCGTTCGCACAG
CGTCAGGGGAGTCCGTCTTTGATCCACCTCCCGCGTATGTTAGACCCCCC
AAGGTCGCACTTGGGAATACAACCCTTTCTACTTGCGTTGCTGGTGCCAT
AGGTTTCAAACCTGTGCGCTGTCTCACGCCCTCGCTCGTCCGTCCAACCA
ACCCCACCTCACAATGAGTACCCGCAGTAAAGAAGCAAGCCATGGCCACC
AACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGGTCCTTTCCT
GTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCTATGGGGACC
GCCAGGTTTTACAGGGACTTAACATGCGTCTCAAGAAGGGCAGCCGCTGC
CTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCACGCTACTCCGTATTCT
GGGCGGGCGGCACTTGACCAAGCCGGACGATGCAGTGACCGTGCTGGGAA
TGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGCCTACATGGAT
ACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACGGGGTGCCCTT
GCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTGCAGAGCCAGC
ACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCATTGATCCCGAA
TGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCGTCCAGTTGTT
CTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGACGAGGTGACTG
TGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTGGTTGCGGAAA
GAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGCACATTTTCGA
CGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACCAACCAGGGCA
AAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTATCAGGAACTG
CGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGGAGAGATGGTT
ACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAAGAGAAGGAGC
TTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCACGTTATCGGGA
GGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATGAGATGAAGTA
AACAATGAAAGGGTGGGGACAAAATTAAAGAGGTGACAGAGTGCAGATAG
AGCAGTTTTATGCAAGATAACGCATTCAAACACACACGGGATCATTATCC
TTGAGAGGGAAAACTGACCGAAAGAACCAATTTCCAACTAAGCATACAAA
TCGAAGGAAACTTGTTGTAGGTCCCCAAAATAAACG
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protein sequence of NO22G01160.2

>NO22G01160.2-protein ID=NO22G01160.2-protein|Name=NO22G01160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MATNTATQLKPEEDVAGPFLSDDAVLIRDLNFSYGDRQVLQGLNMRLKKG
SRCLLIGANGAGKSTLLRILGGRHLTKPDDAVTVLGMHAFRDTKLNLVRA
YMDTDWGMRTVAFAGYGVPLQADIPVTGMMSKLQSQHPERRDELLELLGI
DPEWRMNRVSDGQRRRVQLFLGLVRPFDILLLDEVTVSLDVVVRQDLLRW
LRKETEERGATVLYATHIFDGLDDWPSHLHFMTNQGKTGWQGKLEELDHY
QELRKAGDPGPLLRIAERWLRTEIDVQKRQKRQEKELGAQAHDAKLARST
LSGGGYAAGRMYDVFHEMK*
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mRNA from alignment at chr22:346790..348635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01160.2 ID=NO22G01160.2|Name=NO22G01160.2|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at chr22:346790..348635+ (Nannochloropsis oceanica)
ATGTTTGTCGAGATTATCATATATACTAGATAACATAAAGCTCATCGTCG
CAGATTACGATGAGGTTTTCGTGCCGTGCGTCCGCTGTGCGTTCGCACAG
CGTCAGGGGAGTCCGTCTTTGATCCACCTCCCGCGTATGTTAGACCCCCC
AAGGTCGCACTTGGGAATACAACCCTTTCTACTTGCGTTGCTGGTGCCAT
AGGTTTCAAACCTGTGCGCTGTCTCACGCCCTCGCTCGTCCGTCCAACCA
ACCCCACCTCACAATGAGTACCCGCAGTAAAGAAGCAAGCCATGGCCACC
AACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGGTCCTTTCCT
GTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCTATGGGGACC
GCCAGGTAAGCACAAAGGGGCATCAAGAAAGCTTAAGCTCGGCTCGTGAT
TCGGCAAGTGCGTGGTGGTACGGAGCACGCTGCTTGCCGAGCCCCTTCTC
ATCGCCTTCTCGGCACCCTCTGTCCACCAAACCATAGGTTTTACAGGGAC
TTAACATGCGTCTCAAGAAGGGCAGCCGGTATGTCGAAGGGTGAAGTGGA
GAGAGTGCGGATGGTGTTGTGTGTCTGGGCAGGTGTGTTGCTTCTTAGTA
ACGCATACGTCACTCTCCTCACCACTACCCACCCAGTTACGCAGTATATA
ATGGTCAGGGTTACCTCGGTGCTGACGTATGTGTAATCTCTCTGTTGCTA
TATAAATGTGACGTCGTGTCTGTGTCTATCCACGGTGCGCATGTGGCGAG
TGGCCATTCTAAAAACTTGGATTCCTCCTATTCCCACCCAAACCCTCCCC
CCGCAGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCACGCTAC
TCCGTATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGATGCAGTGACC
GTGCTGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGC
CTACATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACG
GGGTGCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTG
CAGAGCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCAT
TGATCCCGAATGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCG
TCCAGTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGAC
GAGGTGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTG
GTTGCGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGC
ACATTTTCGACGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACC
AACCAGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTA
TCAGGAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGG
AGAGATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAA
GAGAAGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCAC
GTTATCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATG
AGATGAAGTAAACAATGAAAGGGTGGGGACAAAATTAAAGAGGTGACAGA
GTGCAGATAGAGCAGTTTTATGCAAGATAACGCATTCAAACACACACGGG
ATCATTATCCTTGAGAGGGAAAACTGACCGAAAGAACCAATTTCCAACTA
AGCATACAAATCGAAGGAAACTTGTTGTAGGTCCCCAAAATAAACG
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Coding sequence (CDS) from alignment at chr22:346790..348635+

>NO22G01160.2 ID=NO22G01160.2|Name=NO22G01160.2|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr22:346790..348635+ (Nannochloropsis oceanica)
ATGGCCACCAACACCGCGACGCAACTGAAGCCGGAGGAGGATGTGGCGGG
TCCTTTCCTGTCTGACGATGCCGTGCTTATTCGCGATCTGAACTTTAGCT
ATGGGGACCGCCAGGTTTTACAGGGACTTAACATGCGTCTCAAGAAGGGC
AGCCGCTGCCTTCTCATCGGTGCCAACGGCGCCGGCAAGAGCACGCTACT
CCGTATTCTGGGCGGGCGGCACTTGACCAAGCCGGACGATGCAGTGACCG
TGCTGGGAATGCACGCCTTCCGCGACACCAAGTTGAATCTAGTTCGTGCC
TACATGGATACGGACTGGGGCATGCGCACGGTGGCCTTTGCCGGCTACGG
GGTGCCCTTGCAGGCGGACATCCCCGTGACGGGCATGATGAGCAAATTGC
AGAGCCAGCACCCGGAGAGGCGGGATGAGCTGTTGGAGTTACTGGGCATT
GATCCCGAATGGAGGATGAACCGCGTCTCAGACGGACAACGACGACGCGT
CCAGTTGTTCTTGGGCTTGGTCCGACCGTTCGACATTCTCCTGCTCGACG
AGGTGACTGTGTCCTTGGACGTCGTAGTGCGTCAGGACCTGCTGCGGTGG
TTGCGGAAAGAGACCGAGGAGCGGGGGGCGACCGTGTTGTACGCCACGCA
CATTTTCGACGGCCTCGACGATTGGCCCTCACACTTGCACTTCATGACCA
ACCAGGGCAAAACAGGCTGGCAGGGCAAGTTAGAGGAGCTGGATCATTAT
CAGGAACTGCGCAAGGCAGGGGATCCGGGCCCTCTGTTGCGCATCGCGGA
GAGATGGTTACGAACGGAAATAGACGTGCAAAAGCGCCAGAAAAGACAAG
AGAAGGAGCTTGGGGCTCAGGCGCATGATGCCAAGCTGGCTCGGTCCACG
TTATCGGGAGGGGGGTACGCGGCAGGTAGAATGTATGACGTATTTCATGA
GATGAAGTAA
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Synonyms
Publications