NO22G01140.1, NO22G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01140.1
Unique NameNO22G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length282
Alignment locationchr22:343966..344247 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:343966..344247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01140.1 vs.
Match: EWM21468.1 (hypothetical protein Naga_100019g32 [Nannochloropsis gaditana])

HSP 1 Score: 97.4 bits (241), Expect = 2.400e-17
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:    1 MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQA 81
            MPSIKILFFAAAREL GGVQQV  ++ P  D  GVL LRDVR +LA  FP L  IIADVTLALNM+YVA   E+ L V A
Sbjct:    1 MPSIKILFFAAARELVGGVQQVDVEIQPRADSSGVLYLRDVRTYLASAFPDLDSIIADVTLALNMQYVAA-VESLLCVDA 79
The following BLAST results are available for this feature:
BLAST of NO22G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21468.12.400e-1767.50hypothetical protein Naga_100019g32 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01140NO22G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01140.1NO22G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01140.1.cds1NO22G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01140.1 ID=NO22G01140.1|Name=NO22G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=282bp
ATGCCCTCCATCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGG
CGGCGTGCAGCAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACG
GGGTGCTGCGCCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCA
GGCCTCAGCCCCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTA
TGTTGCCGTCGAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAG
TGGCGCTTATACCACCCATCAGTGGCGGATAA
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protein sequence of NO22G01140.1

>NO22G01140.1-protein ID=NO22G01140.1-protein|Name=NO22G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFP
GLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG*
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mRNA from alignment at chr22:343966..344247+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01140.1 ID=NO22G01140.1|Name=NO22G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=282bp|location=Sequence derived from alignment at chr22:343966..344247+ (Nannochloropsis oceanica)
ATGCCCTCCATCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGG
CGGCGTGCAGCAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACG
GGGTGCTGCGCCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCA
GGCCTCAGCCCCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTA
TGTTGCCGTCGAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAG
TGGCGCTTATACCACCCATCAGTGGCGGATAA
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Coding sequence (CDS) from alignment at chr22:343966..344247+

>NO22G01140.1 ID=NO22G01140.1|Name=NO22G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at chr22:343966..344247+ (Nannochloropsis oceanica)
ATGCCCTCCATCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGG
CGGCGTGCAGCAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACG
GGGTGCTGCGCCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCA
GGCCTCAGCCCCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTA
TGTTGCCGTCGAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAG
TGGCGCTTATACCACCCATCAGTGGCGGATAA
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Synonyms
Publications