NO22G01140, NO22G01140 (gene) Nannochloropsis oceanica

Overview
NameNO22G01140
Unique NameNO22G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length282
Alignment locationchr22:343966..344247 +

Link to JBrowse

Properties
Property NameValue
Descriptionco-factor for nitrate, reductase and xanthine dehydrogenase 7
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:343966..344247 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016155Mopterin_synth/thiamin_S_b
IPR003749ThiS/MoaD-like
Homology
BLAST of NO22G01140 vs. NCBI_GenBank
Match: EWM21468.1 (hypothetical protein Naga_100019g32 [Nannochloropsis gaditana])

HSP 1 Score: 97.4 bits (241), Expect = 2.400e-17
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 0
Query:    1 MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQA 81
            MPSIKILFFAAAREL GGVQQV  ++ P  D  GVL LRDVR +LA  FP L  IIADVTLALNM+YVA   E+ L V A
Sbjct:    1 MPSIKILFFAAARELVGGVQQVDVEIQPRADSSGVLYLRDVRTYLASAFPDLDSIIADVTLALNMQYVAA-VESLLCVDA 79          
BLAST of NO22G01140 vs. NCBI_GenBank
Match: CBN74713.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.6 bits (179), Expect = 3.800e-10
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    4 IKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG 94
            +K+LFFA+ RE+AG  +  +   +P  D   + +LR+   H+ +  PGL P+ A VTLALN EY+  E +ATL  + GDEVA IPPISGG
Sbjct:   25 VKVLFFASCREMAGTKETSLE--LPG-DSSSIAQLRE---HIVEKLPGLQPVAATVTLALNQEYLDPEQDATL--KEGDEVAFIPPISGG 106          
BLAST of NO22G01140 vs. NCBI_GenBank
Match: ETM01062.1 (molybdopterin converting factor, subunit 1 [Phytophthora parasitica])

HSP 1 Score: 67.0 bits (162), Expect = 3.500e-8
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 0
Query:    4 IKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG 94
            IK+L+FA+ARE  G  ++ ++     P+ DGV+ L  +R  L   +P  +  I  +TLA N+EY    +E  + +Q GDEVALIPPISGG
Sbjct:    3 IKVLYFASAREEIGAREEKLS----LPETDGVVTLASLRCLLMDKYPQAAATIESITLARNLEY----SEDDVALQDGDEVALIPPISGG 84          
BLAST of NO22G01140 vs. NCBI_GenBank
Match: XP_022838351.1 (Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp [Ostreococcus tauri] >CEF96876.1 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp [Ostreococcus tauri] >OUS42410.1 hypothetical protein BE221DRAFT_61668 [Ostreococcus tauri])

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-7
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 0
Query:    1 MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG 94
            MP + +L FA ARELA    +  +  +  PD D    + D RA L   FP LS ++     ALN  YV  + E    V+AGDE+A++PPISGG
Sbjct:    1 MPLLNVLLFARARELA----EASSTTLTLPD-DPPASVADARAELLTRFPQLSGVLQTSIFALNKTYVKRDDERVAIVRAGDELAVVPPISGG 88          
BLAST of NO22G01140 vs. NCBI_GenBank
Match: KPL73992.1 (hypothetical protein AC812_14305 [Bellilinea caldifistulae])

HSP 1 Score: 63.5 bits (153), Expect = 3.900e-7
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0
Query:    1 MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG 94
            M +IK+LFFA  +EL G  ++++  V+P P     LR+ D++  L + FP ++  +A+V +A+N +Y A E      +QAGDEVA  PP+SGG
Sbjct:    1 MGAIKVLFFAHLKELCGVDKEMI--VLPQP-----LRVADLKRLLGERFPLINERLANVLVAVNQQYAADED----WIQAGDEVAFFPPVSGG 82          
BLAST of NO22G01140 vs. NCBI_GenBank
Match: WP_061917788.1 (molybdopterin converting factor subunit 1 [Bellilinea caldifistulae] >GAP11240.1 molybdopterin synthase subunit MoaE/molybdopterin synthase subunit MoaD [Bellilinea caldifistulae])

HSP 1 Score: 63.5 bits (153), Expect = 3.900e-7
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0
Query:    1 MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG 94
            M +IK+LFFA  +EL G  ++++  V+P P     LR+ D++  L + FP ++  +A+V +A+N +Y A E      +QAGDEVA  PP+SGG
Sbjct:    4 MGAIKVLFFAHLKELCGVDKEMI--VLPQP-----LRVADLKRLLGERFPLINERLANVLVAVNQQYAADED----WIQAGDEVAFFPPVSGG 85          
BLAST of NO22G01140 vs. NCBI_GenBank
Match: OEU22271.1 (hypothetical protein FRACYDRAFT_267217 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 62.4 bits (150), Expect = 8.700e-7
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    1 MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFPGLSPIIAD---VTLALNMEYVAVETEATLTVQAGDEVALIPPISGG 94
            M SI++LFFA+ARE AG + +   ++ P       L     R  LA  +PGL+ ++ D   +TLALN EYV       L ++ GD +ALIPPISGG
Sbjct:    1 MISIQVLFFASAREAAGDISKKCIELTPDEANTSSL-----RRLLALEYPGLASMVKDEENLTLALNEEYVT--RGQVLALKDGDTIALIPPISGG 89          
The following BLAST results are available for this feature:
BLAST of NO22G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM21468.12.400e-1767.50hypothetical protein Naga_100019g32 [Nannochlorops... [more]
CBN74713.13.800e-1047.78conserved unknown protein [Ectocarpus siliculosus][more]
ETM01062.13.500e-843.33molybdopterin converting factor, subunit 1 [Phytop... [more]
XP_022838351.11.300e-741.94Molybdopterin synthase/thiamin biosynthesis sulphu... [more]
KPL73992.13.900e-740.86hypothetical protein AC812_14305 [Bellilinea caldi... [more]
WP_061917788.13.900e-740.86molybdopterin converting factor subunit 1 [Bellili... [more]
OEU22271.18.700e-742.71hypothetical protein FRACYDRAFT_267217 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004148NSK004148Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01140.1NO22G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595659gene_7115Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g32gene8962Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01140.1NO22G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01140 ID=NO22G01140|Name=NO22G01140|organism=Nannochloropsis oceanica|type=gene|length=282bp
ATGCCCTCCATCAAGATCCTGTTTTTTGCCGCTGCCCGGGAGCTGGCAGG
CGGCGTGCAGCAAGTCGTGGCCGACGTCGTGCCAGCACCAGACGGAGACG
GGGTGCTGCGCCTGAGGGACGTGCGAGCGCACCTGGCCAAGACGTTTCCA
GGCCTCAGCCCCATCATTGCAGACGTGACGCTGGCCTTGAATATGGAGTA
TGTTGCCGTCGAAACGGAAGCGACCCTGACGGTGCAGGCGGGGGATGAAG
TGGCGCTTATACCACCCATCAGTGGCGGATAA
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protein sequence of NO22G01140.1

>NO22G01140.1-protein ID=NO22G01140.1-protein|Name=NO22G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MPSIKILFFAAARELAGGVQQVVADVVPAPDGDGVLRLRDVRAHLAKTFP
GLSPIIADVTLALNMEYVAVETEATLTVQAGDEVALIPPISGG*
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Synonyms
Publications