NO22G01130.1, NO22G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01130.1
Unique NameNO22G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2484
Alignment locationchr22:343814..346766 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:343814..346766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01130.1 vs.
Match: EWM21454.1 (ras-related protein rab-2-a [Nannochloropsis gaditana])

HSP 1 Score: 370.2 bits (949), Expect = 4.700e-99
Identity = 190/225 (84.44%), Postives = 201/225 (89.33%), Query Frame = 0 
Query:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAGRGEGNVSVGGRGGAEAGE-AGGCVC 225
            MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQD V+VKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRR+SF H ERWLSELRENAS CG+KMVIMLVGNKCDRE RRAVS EEGEAFAR+HGLLF ETSAKTR+NVD+AF RVAEAV EKIE+GVIDPADESVGIR++ +    AGRG G V+VG RG  E  E AG C C
Sbjct:    1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHR----AGRGGGRVAVGARGEGEGAEKAGSCAC 221
The following BLAST results are available for this feature:
BLAST of NO22G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21454.14.700e-9984.44ras-related protein rab-2-a [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01130NO22G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01130.1NO22G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01130.1.cds1NO22G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01130.1.cds2NO22G01130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01130.1.cds3NO22G01130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01130.1 ID=NO22G01130.1|Name=NO22G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp
AACACACAGGCAATTGCAGGGTAAGCGTTGGCTGATAAGCTGGACTGCTC
GCCCCACTGTCTACGCGGCTATTGGACGACTTATTAACAGGCTCGATTTG
ACGCAGGCAGGACAGGCATATTATTTTACCTCTGCGGCCACTCGAGAACA
CTGACCACGCGCATCTGCCTGCCTGCCCTCCTCTTTGACCTTAGGCCTGT
GCCTCACATCAGAACAACATTCTCATAGAAAGAGATGTCGCATGATCTGC
TGATCAAGCTGATCGTCATTGGCAACACCAGCGTGGGCAAGAGCTGCCTG
CTGCTGCAATTCACAGATAAGCGCTTCCTGCCGTTGCACAATAGCACGAT
TGGTGTGGAGTTCGGGAGTAAGCTGGTAACGGTCCAAGACAACGTGAAGG
TAAAGCTGCAGATCTGGGACACGGCTGGCCAAGAGACCTTCCGGAGCATC
ACCAGGAGTTACTACCGGGGGGCGATTGGTGCCCTCCTCGTCTATGACAT
CACAAGGCGGGATTCCTTCGTTCACGTGGAGCGCTGGCTTTCCGAGCTCC
GCGAAAACGCCAGCAGCTGTGGTGACAAGATGGTCATCATGCTCGTGGGC
AACAAATGCGACCGGGAGAACCGCCGGGCCGTTTCAACCGAGGAAGGTGA
GGCCTTTGCGCGGGATCATGGCTTATTATTCATTGAAACCTCGGCGAAAA
CGAGGATTAATGTCGATCAGGCCTTCACGAGAGTAGCCGAGGCGGTGTGC
GAGAAGATCGAGTCGGGGGTGATTGACCCTGCAGATGAGAGTGTTGGGAT
CCGGTACATGCAAAAAAGGGGTAAGAGTGCGGGAAGGGGGGAAGGAAATG
TGTCGGTGGGTGGGCGGGGAGGTGCTGAGGCGGGTGAGGCGGGGGGCTGC
GTGTGTTGAGTCAGACGCTGAACGCTGGAAGGGAATGGTTGTACAGGCCT
TCTCAGGTCTGACGCTTCAGCTACTTGTAGAAAGTGAGGGGTGAGTGGGT
GGTGGAGGAAAGAATGGGAAGGCCCAGTGAAAAGAGAGGTCTGGAGGGAG
GGAGGAACGCTAATGAGTGCGGAGAGAGTAGATAGTTGGGGCCGTGCGGA
GAGAAGATATTTTGGGCCGTTGTCGTTTGATGTGGCTGGCTGAAGTGAGG
GAGAAGATAACGAGGGATAGAGATTGGAGGCGATGTTTTTGTACATGAGA
GTGAAGGAAGAAAGTCTTAAATCCACGTTAAGAAAGAAGCAAGACAGACA
CGAAGATTGACCCCTTTTCTCTTCAAATTTGTCAGGTTGAAGGCTACACA
ACGCCAAACTCTATTTAATCTTATTTTTATTAAGAGAGTCCAGCTCTCCC
TGTTCCATGTTTATGGTAACCCCGCACCCTCATTCCTCACCGCCCGAGGA
TTCTCCAGCGGGTCCCTCCCTACTTCCTTTACCTCTACCTTGACCGTATG
CTTACCCGGCAGCATTACCAACCCCAAATTTCTCACCTCCTGCCTGTCTA
CTCTCCCTTGTTCACCCGCCCTTTCCCTAACCACTCTCCGCTCCGTCGCC
CCCTGCAAGATGAAGTTTAGATGTTCGTCCAAACACTGATACTTGCCCGT
CACTACCCTTCCATCTGATAGCGTCACACGCAATGTGCTCTGCAGTAGTC
CCCGCATGGTCGCCACGGCTTGTAGTCCTGCTTTGGCGGCCGCAATGGCC
GAGGCGGAGGCGACGTGCTCCGTCATGTATTCGTATCTGGGGGATAAGGG
AAGAAAATAAGATGGTTAGGGCTTTTAACACTCCACATTTTTTGTGCCTT
GGTGGCTAATCCAAATAGGCAGCTCATTTTCCCCTGGAGAAGTCCAACTC
CAAGGCTTCTATCCTATGCCCTTAACATTTCGACTCCCCCCTTTCGCTTG
TACGTTCGCAGCAAAAAAAGACCACAATAGTGCGTTCAATAACAATGCTC
AAATTCAATACAACGCTGTCTCGAGCCCTCACAACTTGACCCCGCCGTTC
AAATGCAGCCTCATTTTGACCCAATTGTGAGTAGAACCATGCACCAGCAC
TTATCCGCCACTGATGGGTGGTATAAGCGCCACTTCATCCCCCGCCTGCA
CCGTCAGGGTCGCTTCCGTTTCGACGGCAACATACTCCATATTCAAGGCC
AGCGTCACGTCTGCAATGATGGGGCTGAGGCCTGGAAACGTCTTGGCCAG
GTGCGCTCGCACGTCCCTCAGGCGCAGCACCCCGTCTCCGTCTGGTGCTG
GCACGACGTCGGCCACGACTTGCTGCACGCCGCCTGCCAGCTCCCGGGCA
GCGGCAAAAAACAGGATCTTGATGGAGGGCATTTTGTGTGGTGTCGAGCG
CGGTGGTTGTTGTCGTCGGAGGTAGCCGGAGCCAGTTGATTCAGTTGTTC
CAGCAGGAGCGAGTAACGCAGCGTATGCCTCCTATTTATTAGGATGGTGC
TCAATGAATGTCGTCGGCTGTTTGTCGTGTTTTT
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protein sequence of NO22G01130.1

>NO22G01130.1-protein ID=NO22G01130.1-protein|Name=NO22G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTV
QDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVER
WLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFI
ETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAG
RGEGNVSVGGRGGAEAGEAGGCVC*
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mRNA from alignment at chr22:343814..346766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01130.1 ID=NO22G01130.1|Name=NO22G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2953bp|location=Sequence derived from alignment at chr22:343814..346766- (Nannochloropsis oceanica)
AACACACAGGCAATTGCAGGGTAAGCGTTGGCTGATAAGCTGGACTGCTC
GCCCCACTGTCTACGCGGCTATTGGACGACTTATTAACAGGCTCGATTTG
ACGCAGGCAGGACAGGCATATTATTTTACCTCTGCGGCCACTCGAGAACA
CTGACCACGCGCATCTGCCTGCCTGCCCTCCTCTTTGACCTTAGGCCTGT
GCCTCACATCAGAACAACATTCTCATAGAAAGAGATGTCGCATGATCTGC
TGATCAAGGTAAGGAGCTCTTGCTCTGTTGTGGATCTTGAGTATGCTTGC
TTATTTCAAGAACATCACAGCCCGAGGAGGGTTAGCGTCCCCAGTTTCCA
TTTTTCCGCGCCGTACCTTGCATGCTGATGGTAATTCCAACAGTCGGTAG
AACTCTGTTAGGGTTAGGGTCGGTAGAGGTCGACGGGAGCCTTACGTAAT
GCAGTCACCTCGGACTAACCGCACCTCTCGTTTCCCTATCCCATTCCACC
ACACTTTCCTTCCTGCAGCTGATCGTCATTGGCAACACCAGCGTGGGCAA
GAGCTGCCTGCTGCTGCAATTCACAGATAAGCGCTTCCTGCCGTTGCACA
ATAGCACGATTGGTGTGGAGTTCGGGAGTAAGCTGGTAACGGTCCAAGAC
AACGTGAAGGTAAAGCTGCAGATCTGGGACACGGCTGGCCAAGAGACCTT
CCGGAGCATCACCAGGAGTTACTACCGGGGGGCGATTGGTGCCCTCCTCG
TCTATGACATCACAAGGCGGGATTCGTGAGTATTGAAATATTGAAAGAGA
ACGGTGGCGTGGGTTATCCCCCTCTGGTCTCCCTCTGCTCTCTCCCGCCT
ATCTCTATTAACCTTCTCTTCACTTGCACTGCCGGCACATACAATATTAC
GTCCTATGATTCCCATTCCTCCTAGCGCATTGGGTTTTGATGCAGCACTC
TGACATTCTCTTCTTCTCTCTCCTCTCCTGACAGCTTCGTTCACGTGGAG
CGCTGGCTTTCCGAGCTCCGCGAAAACGCCAGCAGCTGTGGTGACAAGAT
GGTCATCATGCTCGTGGGCAACAAATGCGACCGGGAGAACCGCCGGGCCG
TTTCAACCGAGGAAGGTGAGGCCTTTGCGCGGGATCATGGCTTATTATTC
ATTGAAACCTCGGCGAAAACGAGGATTAATGTCGATCAGGCCTTCACGAG
AGTAGCCGAGGCGGTGTGCGAGAAGATCGAGTCGGGGGTGATTGACCCTG
CAGATGAGAGTGTTGGGATCCGGTACATGCAAAAAAGGGGTAAGAGTGCG
GGAAGGGGGGAAGGAAATGTGTCGGTGGGTGGGCGGGGAGGTGCTGAGGC
GGGTGAGGCGGGGGGCTGCGTGTGTTGAGTCAGACGCTGAACGCTGGAAG
GGAATGGTTGTACAGGCCTTCTCAGGTCTGACGCTTCAGCTACTTGTAGA
AAGTGAGGGGTGAGTGGGTGGTGGAGGAAAGAATGGGAAGGCCCAGTGAA
AAGAGAGGTCTGGAGGGAGGGAGGAACGCTAATGAGTGCGGAGAGAGTAG
ATAGTTGGGGCCGTGCGGAGAGAAGATATTTTGGGCCGTTGTCGTTTGAT
GTGGCTGGCTGAAGTGAGGGAGAAGATAACGAGGGATAGAGATTGGAGGC
GATGTTTTTGTACATGAGAGTGAAGGAAGAAAGTCTTAAATCCACGTTAA
GAAAGAAGCAAGACAGACACGAAGATTGACCCCTTTTCTCTTCAAATTTG
TCAGGTTGAAGGCTACACAACGCCAAACTCTATTTAATCTTATTTTTATT
AAGAGAGTCCAGCTCTCCCTGTTCCATGTTTATGGTAACCCCGCACCCTC
ATTCCTCACCGCCCGAGGATTCTCCAGCGGGTCCCTCCCTACTTCCTTTA
CCTCTACCTTGACCGTATGCTTACCCGGCAGCATTACCAACCCCAAATTT
CTCACCTCCTGCCTGTCTACTCTCCCTTGTTCACCCGCCCTTTCCCTAAC
CACTCTCCGCTCCGTCGCCCCCTGCAAGATGAAGTTTAGATGTTCGTCCA
AACACTGATACTTGCCCGTCACTACCCTTCCATCTGATAGCGTCACACGC
AATGTGCTCTGCAGTAGTCCCCGCATGGTCGCCACGGCTTGTAGTCCTGC
TTTGGCGGCCGCAATGGCCGAGGCGGAGGCGACGTGCTCCGTCATGTATT
CGTATCTGGGGGATAAGGGAAGAAAATAAGATGGTTAGGGCTTTTAACAC
TCCACATTTTTTGTGCCTTGGTGGCTAATCCAAATAGGCAGCTCATTTTC
CCCTGGAGAAGTCCAACTCCAAGGCTTCTATCCTATGCCCTTAACATTTC
GACTCCCCCCTTTCGCTTGTACGTTCGCAGCAAAAAAAGACCACAATAGT
GCGTTCAATAACAATGCTCAAATTCAATACAACGCTGTCTCGAGCCCTCA
CAACTTGACCCCGCCGTTCAAATGCAGCCTCATTTTGACCCAATTGTGAG
TAGAACCATGCACCAGCACTTATCCGCCACTGATGGGTGGTATAAGCGCC
ACTTCATCCCCCGCCTGCACCGTCAGGGTCGCTTCCGTTTCGACGGCAAC
ATACTCCATATTCAAGGCCAGCGTCACGTCTGCAATGATGGGGCTGAGGC
CTGGAAACGTCTTGGCCAGGTGCGCTCGCACGTCCCTCAGGCGCAGCACC
CCGTCTCCGTCTGGTGCTGGCACGACGTCGGCCACGACTTGCTGCACGCC
GCCTGCCAGCTCCCGGGCAGCGGCAAAAAACAGGATCTTGATGGAGGGCA
TTTTGTGTGGTGTCGAGCGCGGTGGTTGTTGTCGTCGGAGGTAGCCGGAG
CCAGTTGATTCAGTTGTTCCAGCAGGAGCGAGTAACGCAGCGTATGCCTC
CTATTTATTAGGATGGTGCTCAATGAATGTCGTCGGCTGTTTGTCGTGTT
TTT
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Coding sequence (CDS) from alignment at chr22:343814..346766-

>NO22G01130.1 ID=NO22G01130.1|Name=NO22G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr22:343814..346766- (Nannochloropsis oceanica)
ATGTCGCATGATCTGCTGATCAAGCTGATCGTCATTGGCAACACCAGCGT
GGGCAAGAGCTGCCTGCTGCTGCAATTCACAGATAAGCGCTTCCTGCCGT
TGCACAATAGCACGATTGGTGTGGAGTTCGGGAGTAAGCTGGTAACGGTC
CAAGACAACGTGAAGGTAAAGCTGCAGATCTGGGACACGGCTGGCCAAGA
GACCTTCCGGAGCATCACCAGGAGTTACTACCGGGGGGCGATTGGTGCCC
TCCTCGTCTATGACATCACAAGGCGGGATTCCTTCGTTCACGTGGAGCGC
TGGCTTTCCGAGCTCCGCGAAAACGCCAGCAGCTGTGGTGACAAGATGGT
CATCATGCTCGTGGGCAACAAATGCGACCGGGAGAACCGCCGGGCCGTTT
CAACCGAGGAAGGTGAGGCCTTTGCGCGGGATCATGGCTTATTATTCATT
GAAACCTCGGCGAAAACGAGGATTAATGTCGATCAGGCCTTCACGAGAGT
AGCCGAGGCGGTGTGCGAGAAGATCGAGTCGGGGGTGATTGACCCTGCAG
ATGAGAGTGTTGGGATCCGGTACATGCAAAAAAGGGGTAAGAGTGCGGGA
AGGGGGGAAGGAAATGTGTCGGTGGGTGGGCGGGGAGGTGCTGAGGCGGG
TGAGGCGGGGGGCTGCGTGTGTTGA
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Synonyms
Publications