NO22G01130, NO22G01130 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO22G01130 vs. NCBI_GenBank
Match: EWM21454.1 (ras-related protein rab-2-a [Nannochloropsis gaditana]) HSP 1 Score: 370.2 bits (949), Expect = 4.700e-99 Identity = 190/225 (84.44%), Postives = 201/225 (89.33%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAGRGEGNVSVGGRGGAEAGE-AGGCVC 225 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQD V+VKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRR+SF H ERWLSELRENAS CG+KMVIMLVGNKCDRE RRAVS EEGEAFAR+HGLLF ETSAKTR+NVD+AF RVAEAV EKIE+GVIDPADESVGIR++ + AGRG G V+VG RG E E AG C C Sbjct: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDQVRVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRESFTHAERWLSELRENASGCGEKMVIMLVGNKCDREGRRAVSREEGEAFAREHGLLFTETSAKTRVNVDEAFVRVAEAVYEKIETGVIDPADESVGIRFVHR----AGRGGGRVAVGARGEGEGAEKAGSCAC 221
BLAST of NO22G01130 vs. NCBI_GenBank
Match: GAX23291.1 (Ras-related protein Rab-2A [Fistulifera solaris]) HSP 1 Score: 252.3 bits (643), Expect = 1.400e-63 Identity = 126/205 (61.46%), Postives = 161/205 (78.54%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAGRGEGN 206 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG+++++VQD+ ++KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRD+F H+ RWL E +++A M I+L+GNK D E+RRAV+TEEG+AFA +GLLF+ETSAKT NV+QAF + AE++ KI+SG ID ++ES GI+ + G GN Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISVQDDTQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFQHLGRWLEEAKQHAH---PNMAILLIGNKNDLEHRRAVTTEEGKAFADANGLLFLETSAKTAYNVEQAFLQTAESIYAKIKSGEIDVSNESNGIKVGMTQSGQLNLGAGN 202
BLAST of NO22G01130 vs. NCBI_GenBank
Match: XP_002308739.1 (ras-related protein RABB1c [Populus trichocarpa] >XP_011005770.1 PREDICTED: ras-related protein RABB1c [Populus euphratica] >ABK95459.1 unknown [Populus trichocarpa] >PNT28954.1 hypothetical protein POPTR_006G001500v3 [Populus trichocarpa]) HSP 1 Score: 251.9 bits (642), Expect = 1.900e-63 Identity = 127/212 (59.91%), Postives = 163/212 (76.89%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIR--YMQKRGKSAGRGEGNVSVGG 211 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ DN +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL + R++A++ M IML+GNKCD +RRAVSTEEGE FA++HGL+F+E SAKT NV++AF + A + +KI+ GV D ++ES GI+ Y G S GR G+ GG Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGGSAQAGG 208
BLAST of NO22G01130 vs. NCBI_GenBank
Match: ESQ55718.1 (hypothetical protein EUTSA_v10025789mg [Eutrema salsugineum]) HSP 1 Score: 251.9 bits (642), Expect = 1.900e-63 Identity = 129/212 (60.85%), Postives = 165/212 (77.83%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIR--YMQKRGKSAGRGEGNVSVGG 211 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ DN +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL + R++A++ M IML+GNKCD +RRAVSTEEGE FAR+HGL+F+E SAKT NV++AF + A + +KI+ GV D ++ES GI+ Y G S GR +G+ S GG Sbjct: 100 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGR-DGSTSQGG 306
BLAST of NO22G01130 vs. NCBI_GenBank
Match: XP_024005097.1 (ras-related protein RABB1c [Eutrema salsugineum]) HSP 1 Score: 251.9 bits (642), Expect = 1.900e-63 Identity = 129/212 (60.85%), Postives = 165/212 (77.83%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIR--YMQKRGKSAGRGEGNVSVGG 211 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ DN +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL + R++A++ M IML+GNKCD +RRAVSTEEGE FAR+HGL+F+E SAKT NV++AF + A + +KI+ GV D ++ES GI+ Y G S GR +G+ S GG Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAREHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGR-DGSTSQGG 207
BLAST of NO22G01130 vs. NCBI_GenBank
Match: XP_018686727.1 (PREDICTED: ras-related protein RABB1c [Musa acuminata subsp. malaccensis]) HSP 1 Score: 251.5 bits (641), Expect = 2.400e-63 Identity = 132/222 (59.46%), Postives = 166/222 (74.77%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAGRGEGNVSVGGRGGAEAGEAGGC 223 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ DN +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL E R++A+S M IML+GNKCD +RRAVSTEEGE FA++HGL+F+E SAKT NV++AF A + +KI+ GV D ++ES GI+ G G GGR G+ A +AGGC Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEEARQHANS---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFISTAATIYKKIQDGVFDVSNESYGIK--------VGYGGTAAPSGGRDGSSA-QAGGC 209
BLAST of NO22G01130 vs. NCBI_GenBank
Match: OAY63105.1 (Ras-related protein RABB1c, partial [Ananas comosus]) HSP 1 Score: 251.5 bits (641), Expect = 2.400e-63 Identity = 129/212 (60.85%), Postives = 165/212 (77.83%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIR--YMQKRGKSAGRGEGNVSVGG 211 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ DN +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL + R++A++ M IML+GNKCD +RRAVSTEEGE FA+DHGL+F+E SAKT NV++AF + A + +KI+ GV D ++ES GI+ Y G S GR +G+ S GG Sbjct: 64 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKDHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGR-DGSSSQGG 270
BLAST of NO22G01130 vs. NCBI_GenBank
Match: XP_020080367.1 (ras-related protein RABB1c [Ananas comosus] >XP_020110071.1 ras-related protein RABB1c [Ananas comosus] >OAY74472.1 Ras-related protein RABB1c [Ananas comosus]) HSP 1 Score: 251.5 bits (641), Expect = 2.400e-63 Identity = 129/212 (60.85%), Postives = 165/212 (77.83%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIR--YMQKRGKSAGRGEGNVSVGG 211 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ DN +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL + R++A++ M IML+GNKCD +RRAVSTEEGE FA+DHGL+F+E SAKT NV++AF + A + +KI+ GV D ++ES GI+ Y G S GR +G+ S GG Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKDHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGR-DGSSSQGG 207
BLAST of NO22G01130 vs. NCBI_GenBank
Match: GAX26557.1 (Ras-related protein Rab-2A [Fistulifera solaris]) HSP 1 Score: 251.5 bits (641), Expect = 2.400e-63 Identity = 126/205 (61.46%), Postives = 161/205 (78.54%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGKSAGRGEGN 206 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG+++++VQD+ ++KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRRD+F H+ RWL E +++A M I+L+GNK D E+RRAV+TEEG+AFA +GLLF+ETSAKT NV+QAF + AE++ KI+SG ID ++ES GI+ + G GN Sbjct: 1 MSYSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISVQDDTQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFQHLGRWLEEAKQHAH---PNMAILLIGNKNDLEHRRAVTTEEGKAFADANGLLFLETSAKTAHNVEQAFLQTAESIYAKIKSGEIDVSNESNGIKVGMTQSGQLNLGAGN 202
BLAST of NO22G01130 vs. NCBI_GenBank
Match: PTQ28228.1 (hypothetical protein MARPO_0170s0032 [Marchantia polymorpha]) HSP 1 Score: 251.5 bits (641), Expect = 2.400e-63 Identity = 127/214 (59.35%), Postives = 166/214 (77.57%), Query Frame = 0 Query: 1 MSHDLLIKLIVIGNTSVGKSCLLLQFTDKRFLPLHNSTIGVEFGSKLVTVQDNVKVKLQIWDTAGQETFRSITRSYYRGAIGALLVYDITRRDSFVHVERWLSELRENASSCGDKMVIMLVGNKCDRENRRAVSTEEGEAFARDHGLLFIETSAKTRINVDQAFTRVAEAVCEKIESGVIDPADESVGIRYMQKRGK-SAGRGEGNVSVGGRGG 214 MS+ L K I+IG+T VGKSCLLLQFTDKRF P+H+ TIGVEFG++++T+ D+ +KLQIWDTAGQE+FRSITRSYYRGA GALLVYDITRR++F H+ WL + R++A+S M IML+GNKCD +RRAVSTEEGE FA+++GL+F+ETSAKT NV++AF A + +KIE G+ D ++ES GI+ G +AG G G+ S+ +GG Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DSKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANS---NMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLVFMETSAKTAFNVEEAFINTAAKIYQKIEEGIFDVSNESYGIKVGYGGGAGTAGAGRGDASLAPKGG 210 The following BLAST results are available for this feature:
BLAST of NO22G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO22G01130 ID=NO22G01130|Name=NO22G01130|organism=Nannochloropsis oceanica|type=gene|length=2953bpback to top protein sequence of NO22G01130.1 >NO22G01130.1-protein ID=NO22G01130.1-protein|Name=NO22G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bpback to top Synonyms
Publications
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