NO22G01010.2, NO22G01010.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01010.2
Unique NameNO22G01010.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length605
Alignment locationchr22:316012..316770 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:316012..316770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01010.2 vs.
Match: XP_022904335.1 (dynein light chain Tctex-type-like [Onthophagus taurus])

HSP 1 Score: 70.5 bits (171), Expect = 5.200e-9
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0 
Query:   60 IEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            IE  +G  T++  E+V  WS QV  +  +AL       ++++++ VT +I+Q+ G GL T+S+  WD ATD   TV WEN+ + C+V VF LA+
Sbjct:   66 IEGTIGG-TVYQQEKVNQWSAQVSEHCLSAL----SKLKKSFKYVVTCSIMQKTGAGLHTASSCYWDSATDGTCTVRWENKTMYCIVSVFGLAI 154
The following BLAST results are available for this feature:
BLAST of NO22G01010.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_022904335.15.200e-939.36dynein light chain Tctex-type-like [Onthophagus ta... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01010NO22G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01010.2NO22G01010.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01010.2.cds1NO22G01010.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01010.2.cds2NO22G01010.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01010.2 ID=NO22G01010.2|Name=NO22G01010.2|organism=Nannochloropsis oceanica|type=mRNA|length=605bp
CAAAGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCA
CATTTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGGTAAGCTCC
TCTCACACATACACGACGACCCCGCCAGCGCCCGCCACAGTCTTTTTTTG
TGACCGACCCACATCTCCACATCCGGATACTACCCTGTCACCAAAGGTGA
TTGAGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGA
GGTTGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACA
GTGCGGTGCCCAAGAAAGGACGTATCGTTTTGCAGTCACGACAACGATCG
TCCAACGCAACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATGGGAC
AAAGCCACCGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGTTGAC
ATGCGTAGTCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGCGAAA
TGGACCACAACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTGGAGG
GGTTATTTTTGACATGCATGCTGCAAGAGATGTTTCTTAAGTATCGGTCA
AAATG
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protein sequence of NO22G01010.2

>NO22G01010.2-protein ID=NO22G01010.2-protein|Name=NO22G01010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MTRDRPGTGTFTYQEQVKTITNEVSSSHTYTTTPPAPATVFFCDRPTSPH
PDTTLSPKVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERT
YRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFA
LAV*
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mRNA from alignment at chr22:316012..316770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01010.2 ID=NO22G01010.2|Name=NO22G01010.2|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at chr22:316012..316770- (Nannochloropsis oceanica)
CAAAGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCA
CATTTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGGTAAGCTCC
TCTCACACATACACGACGACCCCGCCAGCGCCCGCCACAGTCTTTTTTTG
TGACCGACCCACATCTCCACATCCGGATACTACCCTGTCACCAAAGGTGA
TTGAGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGA
GGTTGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACA
GTGCGGTGCCCAAGAAAGGACGTATCGTTTTGCAGGTTCGTCACACTGAA
TGGGGGTCGCAGTGTAGCAATCAGGCGAATAATTGATAGAATCCTATCGT
CCCCTTGGTCTCCTGCACCCATAGCTTCAGGCGCCGTCTACTCATTCTCA
TTCCATGCGCCCCCCTTCTTTTCACCCTTCAATATCCAGTCACGACAACG
ATCGTCCAACGCAACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATG
GGACAAAGCCACCGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGT
TGACATGCGTAGTCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGC
GAAATGGACCACAACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTG
GAGGGGTTATTTTTGACATGCATGCTGCAAGAGATGTTTCTTAAGTATCG
GTCAAAATG
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Coding sequence (CDS) from alignment at chr22:316012..316770-

>NO22G01010.2 ID=NO22G01010.2|Name=NO22G01010.2|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr22:316012..316770- (Nannochloropsis oceanica)
ATGACGAGAGACAGACCAGGGACCGGCACATTTACGTACCAGGAGCAAGT
TAAGACCATTACGAATGAGGTAAGCTCCTCTCACACATACACGACGACCC
CGCCAGCGCCCGCCACAGTCTTTTTTTGTGACCGACCCACATCTCCACAT
CCGGATACTACCCTGTCACCAAAGGTGATTGAGAAAGTGCTGGGCTCGCA
CACCTTGTTCGACGGCGAGCGCGTGGGAGGTTGGTCAGATCAGGTTGGGG
CAAATGCCGCCGCCGCGCTCGTCGCACAGTGCGGTGCCCAAGAAAGGACG
TATCGTTTTGCAGTCACGACAACGATCGTCCAACGCAACGGCACTGGGCT
CAGCACCAGCAGTGCCGCAGTATGGGACAAAGCCACCGATTTCAACGTTA
CCGTCCTATGGGAGAACCAGGCGTTGACATGCGTAGTCGTGGTTTTTGCG
TTGGCTGTGTGA
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Synonyms
Publications