NO22G00970, NO22G00970 (gene) Nannochloropsis oceanica

Overview
NameNO22G00970
Unique NameNO22G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1693
Alignment locationchr22:304456..306148 +

Link to JBrowse

Properties
Property NameValue
DescriptionF-box domain, cyclin-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:304456..306148 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
[Close]
BLAST of NO22G00970 vs. NCBI_GenBank
Match: EWM21465.1 (F-box domain, cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 7.200e-46
Identity = 92/186 (49.46%), Postives = 130/186 (69.89%), Query Frame = 0 
Query:   14 SPQAQRSPSPLVLCTGIPHSPP----SLPDDILQRILEYVPSTAGALLPLCSLNHAWRRVATRDNVWEPAIKQQYGQLLLERLEVAKGVHSFYLGQQHARYAHQSLLRPHGAAGQMVCCTPSPDSFFANFTWILEIREGKDKTLVYSAAVALGEVEDRGRLFTSSGHSVVGDGLRLGIDIKSRLRP 196
            SP +  S +   LC  +   P     SLP+D++ R+L+Y+P +  +  P+C +N  WRR+ TRD++WEP I Q+YGQ +L+RL++ K VH FY+GQQ AR   Q LLR  G   + VCCT  P+SFF  FTWI+E+RE + ++LVYS A++L + E+RGRLFTS+G  V+G GL+LGID+KSRL+P
Sbjct:    8 SPSSSHSFTRPSLCQPVVLPPSNFSFSLPEDVVCRVLDYLPRSIRSFAPICRINRMWRRLGTRDDIWEPLINQEYGQSMLKRLDITKNVHRFYVGQQRARICCQPLLRSAGGEDETVCCTLPPESFFQPFTWIVEVREVQHQSLVYSTALSLADGEERGRLFTSAGLFVIGKGLQLGIDVKSRLQP 193
The following BLAST results are available for this feature:
BLAST of NO22G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21465.17.200e-4649.46F-box domain, cyclin-like protein [Nannochloropsis... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00970.1NO22G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567240gene_7097Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00970.1NO22G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00970 ID=NO22G00970|Name=NO22G00970|organism=Nannochloropsis oceanica|type=gene|length=1693bp
ACAGGTCACCCGCAAGCCACAAAGCCAGGAGGTAAGCCTTCCTTAAAGAG
CGATGACAAGGAACTCCGCATCCTCATTTTCACCAACATCGTCTCCTCAA
GCACAAAGATCTCCGTCCCCTCTCGTCCTCTGCACGGGTATTCCGCACAG
TCCCCCTTCGCTGCCTGACGATATCTTGCAGCGCATCTTGGAATATGTCC
CTAGTACCGCGGGCGCACTGCTCCCTCTCTGTTCGTTGAACCATGCTTGG
CGCCGTGTGGCCACCCGCGACAACGTCTGGGAACCCGCCATCAAGCAACA
ATATGGCCAGCTGCTCCTTGAACGCTTGGAGGTCGCTAAAGGAGTGCACA
GTTTTTACCTTGGGCAACAACACGCGCGCTATGCTCATCAATCCCTCCTT
CGTCCCCATGGCGCGGCCGGACAGATGGTCTGTTGTACGCCGTCACCTGA
CAGTTTTTTTGCAAATTTCACATGGATTTTGGAGATACGGGAGGGGAAAG
ATAAGACTTTGGTGTATTCTGCTGCGGTGGCATTGGGGGAGGTCGAAGAC
AGGGGGAGACTCTTTACCTCGAGCGGACACTCGGTCGTCGGAGATGGGTT
GAGACTAGGGATAGATATCAAGTCACGCTTGAGACCACCCCCTCCAAACT
TTGACGGGGGCGGAGGGATTCTGCCGCGGAGGAGGAGAAACAGCAGCATG
TGGAGTGGTTTTGGATTGGCATCAGCGGTTGGGGGACCGACGGGGCTGGC
GAATGGTGGAGGGGGATGGGCCAAGAAGGAGGCGAGAAAGGTGGAGAAGA
AGTGTCAACCGATAGTAGGCGGAGGAAGTGATGCTGCTTCTTGTTGTCAG
GAGGAGCCTGGAGGAAAGGAGAGTGACGACACCATGCTAAGAAAGAAGAC
AGCAGCCGCAGCCGCAGCCGCAGTAGCCGCAGCAGCAGACGCAACCGACA
ACGAAGACAACGAAGACGAAGACGAAGACGAGGACGCTTCCCTTCTGTTC
ACCCTTTCCCTGTATAATAAGCACACCCACGCGTCCGCATGCTTTATCTC
CACCCGTCTTGTCACGGACCGTCCGCCTCGCTGGCAAGGCCGTTATTGGG
ACGGGCCCTTTTCTGGAGCTGATGGGCAACCAACCACGAGGATCGTGCTT
GATCCTACGCATACATTAATCATGCTCCCGATTGTAGAAATGGTGGACTG
GGGGGATAAGACGCTTTTGTTGATGGTAAGGGTGGATCTGAGGATTTGTC
AGTGTGCGGAGGAGGGGGAGGAGGAGGTGGGAGGGAGGGAGGGAGGAGCG
ATGAACATGGAGACGGGAAGAATGAATCAGGTAGGGTGTCGGTGTTCGCC
TTTTGATGGGCTTGGAATGATCCATGAAGAGGGAATGTGGATTCTACTAA
GAGATCTGCTCGTGAACAAGCTGCGATGGTTTTAGTTCCCTCCCTTTCCT
GCCCTCCTCCCTGCCTTCCTCCTCCTTTTCTTTGATGGGCCGCGGAGACG
TCTTCTAGAAGGGACTTACTTTCGAGGGATTGAATGAGTAATATGCGGCG
ATTCGAGAAAGGTTGGGAGATGAGGGAGGAGAATGGTGTGAGCGAGTAAA
TGCCAGCAATGATAACTCGAAGAGAGCGAAGTTGATGCTGGAGAACGTGT
CTGCCGCACAATATCAGTGAGATAATGATGCAAATTAGATACT
back to top

protein sequence of NO22G00970.1

>NO22G00970.1-protein ID=NO22G00970.1-protein|Name=NO22G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MTRNSASSFSPTSSPQAQRSPSPLVLCTGIPHSPPSLPDDILQRILEYVP
STAGALLPLCSLNHAWRRVATRDNVWEPAIKQQYGQLLLERLEVAKGVHS
FYLGQQHARYAHQSLLRPHGAAGQMVCCTPSPDSFFANFTWILEIREGKD
KTLVYSAAVALGEVEDRGRLFTSSGHSVVGDGLRLGIDIKSRLRPPPPNF
DGGGGILPRRRRNSSMWSGFGLASAVGGPTGLANGGGGWAKKEARKVEKK
CQPIVGGGSDAASCCQEEPGGKESDDTMLRKKTAAAAAAAVAAAADATDN
EDNEDEDEDEDASLLFTLSLYNKHTHASACFISTRLVTDRPPRWQGRYWD
GPFSGADGQPTTRIVLDPTHTLIMLPIVEMVDWGDKTLLLMVRVDLRICQ
CAEEGEEEVGGREGGAMNMETGRMNQVGCRCSPFDGLGMIHEEGMWILLR
DLLVNKLRWF*
back to top
Synonyms
Publications