NO22G00720, NO22G00720 (gene) Nannochloropsis oceanica

Overview
NameNO22G00720
Unique NameNO22G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1598
Alignment locationchr22:240451..242048 -

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Properties
Property NameValue
DescriptionDna-directed rna polymerase ii subunit rpb11-a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:240451..242048 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0016740transferase activity
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Homology
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: XP_005855294.1 (DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526] >EKU21072.1 DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526] >EWM21426.1 dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana])

HSP 1 Score: 225.7 bits (574), Expect = 9.200e-56
Identity = 111/121 (91.74%), Postives = 117/121 (96.69%), Query Frame = 0 
Query:   25 RADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQEVRRVQEEQAEREYR 146
            RADSYRL EGE+KCEWKDSANEKM NSGTL INKEDHTMGNL+RMQLLRDKQVKFAGYIHPHPLIHKIELRVQT+DRALSTPMQALENALSDLNQEFTGLK++FQQEVRRVQ EQA+REYR
Sbjct:    6 RADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQALENALSDLNQEFTGLKARFQQEVRRVQAEQADREYR 126
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: EWM21427.1 (dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 1.100e-37
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0 
Query:   25 RADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQ 109
            RADSYRL EGE+KCEWKDSANEKM NSGTL INKEDHTMGNL+RMQLLRDKQVKFAGYIHPHPLIHKIELRVQT+DRALSTPMQ
Sbjct:    6 RADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQ 89
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: XP_009534261.1 (hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae] >EGZ09400.1 hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae])

HSP 1 Score: 112.1 bits (279), Expect = 1.500e-21
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+ N+G  TI +EDHTMGNL+RMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++AL N+L DL+ EF  +  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVMFSGYRHPHPLIHDITVRVQTND--ASSPVEALANSLDDLSTEFDEIAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: XP_002997374.1 (DNA-directed RNA polymerase II subunit J [Phytophthora infestans T30-4] >EEY68824.1 DNA-directed RNA polymerase II subunit J [Phytophthora infestans T30-4])

HSP 1 Score: 112.1 bits (279), Expect = 1.500e-21
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+ N+G  TI +EDHTMGNL+RMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++AL N+L DL+ EF  +  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTND--ASSPVEALANSLDDLSTEFDEIAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: XP_008902778.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI51281.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK91144.1 hypothetical protein, variant [Phytophthora parasitica] >ETL44546.1 hypothetical protein, variant [Phytophthora parasitica] >ETL97718.1 hypothetical protein, variant [Phytophthora parasitica] >ETM50876.1 hypothetical protein, variant [Phytophthora parasitica] >ETN11847.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO80004.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP21046.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP48969.1 hypothetical protein, variant [Phytophthora parasitica P10297] >KUF76077.1 DNA-directed RNA polymerase II subunit J [Phytophthora nicotianae] >KUF94168.1 hypothetical protein AM588_10007596 [Phytophthora nicotianae])

HSP 1 Score: 111.7 bits (278), Expect = 1.900e-21
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+ N+G  TI +EDHTMGNL+RMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++AL N+L DL+ EF  +  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIVVRVQTND--ASSPVEALANSLDDLSTEFDEIAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: XP_024574729.1 (dna-directed rna polymerase ii subunit j [Plasmopara halstedii] >CEG38360.1 dna-directed rna polymerase ii subunit j [Plasmopara halstedii])

HSP 1 Score: 111.3 bits (277), Expect = 2.500e-21
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+ N+G  TI +EDHTMGNL+RMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++AL N+L DL+ EF  +  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEALANSLDDLSTEFDEIAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: OWZ18140.1 (DNA-directed RNA polymerase II subunit J [Phytophthora megakarya])

HSP 1 Score: 111.3 bits (277), Expect = 2.500e-21
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+ N+G  TI +EDHTMGNL+RMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++AL N+L DL+ EF  +  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEALANSLDDLSTEFDEIAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: POM63987.1 (DNA-directed RNA polymerase II subunit J [Phytophthora palmivora var. palmivora] >POM78683.1 DNA-directed RNA polymerase II subunit J [Phytophthora palmivora var. palmivora])

HSP 1 Score: 111.3 bits (277), Expect = 2.500e-21
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+ N+G  TI +EDHTMGNL+RMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++AL N+L DL+ EF  +  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEALANSLDDLSTEFDEIAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: GAX98641.1 (DNA-directed RNA polymerase II subunit J [Pythium insidiosum])

HSP 1 Score: 110.2 bits (274), Expect = 5.700e-21
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L EG +K  ++   + K+PN+G   I +EDHTMGNL+RMQLLRD  V F+GY HPHPL+H I +RVQT D   S+P++AL   L DL+ EF  L  KF++
Sbjct:    5 NRSDSYLLPEGAQKVTYE--KDTKIPNAGRFKILREDHTMGNLIRMQLLRDSNVTFSGYQHPHPLVHDIIVRVQTXD--ASSPVEALGGCLDDLSTEFDELAQKFRR 107
[Close]
BLAST of NO22G00720 vs. NCBI_GenBank
Match: CCA27671.1 (DNAdirected RNA polymerase II subunit J putative [Albugo laibachii Nc14])

HSP 1 Score: 104.8 bits (260), Expect = 2.400e-19
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 0 
Query:   24 NRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQ 131
            NR+DSY L +G +K  ++   + K+PN+G  TI +EDHT+GNL+RMQ LRD  V F+GY HPHPL H I +R+QT D   S+P++AL N L DL+  F  L  KF++
Sbjct:    5 NRSDSYTLPDGAQKVSYE--KDTKIPNAGKFTILREDHTIGNLIRMQSLRDPNVTFSGYRHPHPLNHDIVVRIQTND--ASSPVEALANCLDDLSTVFDELVKKFRR 107
The following BLAST results are available for this feature:
BLAST of NO22G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855294.19.200e-5691.74DNA-directed RNA polymerase II subunit RPB11 [Nann... [more]
EWM21427.11.100e-3792.86dna-directed rna polymerase ii subunit rpb11-a [Na... [more]
XP_009534261.11.500e-2154.21hypothetical protein PHYSODRAFT_523164 [Phytophtho... [more]
XP_002997374.11.500e-2154.21DNA-directed RNA polymerase II subunit J [Phytopht... [more]
XP_008902778.11.900e-2154.21hypothetical protein, variant [Phytophthora parasi... [more]
XP_024574729.12.500e-2154.21dna-directed rna polymerase ii subunit j [Plasmopa... [more]
OWZ18140.12.500e-2154.21DNA-directed RNA polymerase II subunit J [Phytopht... [more]
POM63987.12.500e-2154.21DNA-directed RNA polymerase II subunit J [Phytopht... [more]
GAX98641.15.700e-2153.27DNA-directed RNA polymerase II subunit J [Pythium ... [more]
CCA27671.12.400e-1950.47DNAdirected RNA polymerase II subunit J putative [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004195NSK004195Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00720.3NO22G00720.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G00720.2NO22G00720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G00720.1NO22G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595502gene_7070Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100147g17gene9006Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00720.3NO22G00720.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G00720.2NO22G00720.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G00720.1NO22G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00720 ID=NO22G00720|Name=NO22G00720|organism=Nannochloropsis oceanica|type=gene|length=1598bp
TGACCAAAAAATAAATCCTGTGCTATACATATCACAGAATTATATAAGAA
GGAGGGGGTAAGCTGCGATGTTTATATCTTCGCGTGTGGTCTGAATGGCG
GGGTTGGGCGCAGCAAAAGGACCACTTGCACCTGAATTCAGGTCTGAATA
ATAATTGATCCGACAAGTTTCTTCCATACAGAAGCAACTTGAACGTGTGA
TGATCACGAGGTACCCTCGCTTACCCTGCTGTACCCGCGAACCATGAAGC
CACTCCAGCATGTACAAACTATGCATGCGTGTTCTCTAACACCTGGACTC
GGATCCCTTTCGACACTGTAAGCTACAGAAAGCGCCGCGGGCTCCGGCAT
CCATACTAGCCTCCCTCCCTCCTTCCGCGCGTCGCCGAGCCAAGGCCAAG
CAAGCCAGCCTATCACAATGAATGAACCCAAGCGGTAAGTCCGTAGGGAG
AAATGCTTCCACCACCACTCAAAGGAGGAGCTTCACTTTTTTGGCGTCGT
GTAAGGGCAGTGTGGTCATGTATGTGTGGAGAATCTCCCACGCGTTGTGT
AAGGGCATTGTGGTCATGTATGTGAGAAAAAGGCCACCATTCTCCCACGG
TTAGGACAGACCAGGCTACCCTGCTTGCGCTACCCCTTTCCCCTACCTCC
TTTCCGCATACATGACAATCTGATCGTGGATCCTCAAGAGGTTTGAAAGG
GCTTGCGTCATGGATGTGCCTGTTCACTCGCTCACTCACACACCATCCGT
CTTGCTCACTATCATACTTACCCACGATCAATAACAGGGCGGACTCGTAC
CGGCTGGTGGAAGGCGAGAGGAAGTAAGTGCACCAGGAAATGGGTTATGA
CAAGGGTTTATTACCCTGATTTTGTGTGTGTTATATTCTTTGTATCTGTG
TCCGCGTATTTTGTCGCGTTTTGGGTCGGCTTTTGTTGCTAGTCTCTGTA
TGTATGTACGTGCTCATGTTCGCATTTTGTGTTTTTCAGCTAATGCATAA
CAAGCTCTCACCTGCCGTCCCTCCACTCTTTCTTCCTCCCTCTCTCAGAT
GTGAATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCGGGCACACTG
ACCATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCGGATGCAGCT
CCTGAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACCCACACCCTT
TGATTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGGGCGCTGTCG
ACTCCCATGCAGgtatttattcattgatcgatttacttggtcattcattt
gtttatttattggtgaactaattcacaaacttattttatgtatttttcaa
tattgactacagGCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAGTT
CACGGGTCTCAAAAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGAAG
AACAAGCAGAGCGGGAGTACAGATAGAGAAAGAAGAGGGAGGGAGGAAGT
GTGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGGAGGTGTTTATACAGAAA
GAAGAAGAAGCAATGAGGGATACGAAAGCAAGTATAAGCATTCATGTG
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protein sequence of NO22G00720.3

>NO22G00720.3-protein ID=NO22G00720.3-protein|Name=NO22G00720.3|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MYVLMFAFCVFQLMHNKLSPAVPPLFLPPSLRCEWKDSANEKMPNSGTLT
INKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALST
PMQALENALSDLNQEFTGLKSKFQQEVRRVQEEQAEREYR*
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protein sequence of NO22G00720.2

>NO22G00720.2-protein ID=NO22G00720.2-protein|Name=NO22G00720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MCLFTRSLTHHPSCSLSYLPTINNRADSYRLVEGERKCEWKDSANEKMPN
SGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMD
RALSTPMQALENALSDLNQEFTGLKSKFQQEVRRVQEEQAEREYR*
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protein sequence of NO22G00720.1

>NO22G00720.1-protein ID=NO22G00720.1-protein|Name=NO22G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MNEPKRADSYRLVEGERKCEWKDSANEKMPNSGTLTINKEDHTMGNLVRM
QLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQ
EFTGLKSKFQQEVRRVQEEQAEREYR*
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Synonyms
Publications