NO22G00570.1, NO22G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00570.1
Unique NameNO22G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1210
Alignment locationchr22:195689..197201 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:195689..197201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00570.1 vs.
Match: EWM21400.1 (proteasome subunit alpha type 5 [Nannochloropsis gaditana])

HSP 1 Score: 433.3 bits (1113), Expect = 4.800e-118
Identity = 220/229 (96.07%), Postives = 226/229 (98.69%), Query Frame = 0 
Query:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGVCTKHGVILAVEKRISSPLLEPTSVEKIMEVDSHIGAAMSGLMPDARTLVDHARVEAQNHRFSYNEPIRVEALTQGICDLALNFAEDGEEKKMSRPFGVALLLAGYDDKGPQLFFSDPSGTFTQFKAKAIGSGSEGAQTNLQESYSDSFTLEEAENLALSTLKQVMEEKISADYVEVASVTKEGFKSYGK 230
            MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGVCTKHGVILAVEKRISSPLLEPTSVEKIMEVD+HIGAAMSGLMPDARTLVDHARVEAQNHRFSYNEPIRVEALTQGICDLALNFAEDG+EKKMSRPFGVALLLAGYDDKGPQLFFSDPSGT+ QFKAKAIGSGSEGAQTNLQESYSDSFTLEEAE+LALSTLKQVMEEKISA+YVEV SVTKEGFKS G+
Sbjct:  350 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGVCTKHGVILAVEKRISSPLLEPTSVEKIMEVDTHIGAAMSGLMPDARTLVDHARVEAQNHRFSYNEPIRVEALTQGICDLALNFAEDGDEKKMSRPFGVALLLAGYDDKGPQLFFSDPSGTYAQFKAKAIGSGSEGAQTNLQESYSDSFTLEEAEDLALSTLKQVMEEKISAEYVEVCSVTKEGFKSEGE 578
The following BLAST results are available for this feature:
BLAST of NO22G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21400.14.800e-11896.07proteasome subunit alpha type 5 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00570NO22G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00570.1NO22G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00570.1.cds1NO22G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00570.1.cds2NO22G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00570.1.cds3NO22G00570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00570.1 ID=NO22G00570.1|Name=NO22G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
GCTCCATACAGTACCGTGCTGTCCAGCGTCAGGCAATTTGTCTTCACAAC
GCCTTGGATCACGAATTGATCTTATCTTGTACCCCGGTGTAATAAATAAG
ACAGGCGCATGGGCCAGCTCGGGTTCGCATGGAACTCCGTGCTCGCCGAG
AACGCCAGAGAATTCCTTCTTCCATGCCATCCCCTCATACCCGTTTCCCC
TCCGCGCCCAGTGCTACAAAGCTGTAGTTTCCGTGGTCGTTGTCGTCGAT
AGACTGGTGCTAGCGTTGTTGCGTTCCTGCTTCTCCACTTACCCCCTACC
CTTGCCTCTCCTCCCTTCCTCCTTCAAATAGTCACAGGCTCAAAGAACTT
CTCCTCGCCCTGTCAACCAGCCCTCGCCTCCCCTCTCATCTACCACCAAT
CATTCAGCCATGTTCCTAACCCGCAGCGAATACGACCGAGGGGTCAACAC
CTTCTCTCCCGAAGGCCGGTTGTTCCAAGTTGAGTACGCTATTGAGGCCA
TCAAGCTAGGGTCTACAGCCGTGGGGGTCTGCACCAAACATGGCGTCATC
CTCGCTGTGGAAAAGCGCATTTCCTCGCCCCTGCTGGAACCGACGAGCGT
GGAGAAGATTATGGAGGTTGATTCCCATATTGGTGCTGCCATGTCGGGCT
TGATGCCTGATGCCAGAACGTTGGTGGACCATGCTCGGGTGGAGGCGCAG
AATCATCGATTTAGTTACAACGAGCCTATCCGGGTGGAGGCCCTGACACA
AGGCATATGTGACCTGGCCCTCAACTTCGCCGAAGATGGAGAAGAGAAGA
AGATGAGCCGTCCCTTCGGTGTGGCGCTCTTGCTGGCTGGGTATGATGAC
AAGGGGCCCCAACTGTTTTTTTCGGACCCCTCCGGAACGTTTACTCAGTT
CAAGGCCAAGGCGATTGGTTCGGGTTCGGAAGGCGCGCAAACGAATCTGC
AAGAGAGCTACAGTGACTCCTTCACGCTAGAGGAGGCGGAAAATCTGGCC
TTGTCGACATTGAAGCAAGTGATGGAGGAGAAGATTAGCGCCGACTACGT
GGAGGTGGCGAGTGTAACGAAGGAGGGATTCAAGAGCTACGGGAAGGACG
CACTGGACGCCATTCTGGCTAGGATCTAGGAGGGATGGAGGGAAGGTCGG
GAGGAGGCGGTGGTGGAGAGGTAGTGGGAAGAATCATGAAGCGGGTTAAA
GAAGAAAAAG
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protein sequence of NO22G00570.1

>NO22G00570.1-protein ID=NO22G00570.1-protein|Name=NO22G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGVCTKHGVILAV
EKRISSPLLEPTSVEKIMEVDSHIGAAMSGLMPDARTLVDHARVEAQNHR
FSYNEPIRVEALTQGICDLALNFAEDGEEKKMSRPFGVALLLAGYDDKGP
QLFFSDPSGTFTQFKAKAIGSGSEGAQTNLQESYSDSFTLEEAENLALST
LKQVMEEKISADYVEVASVTKEGFKSYGKDALDAILARI*
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mRNA from alignment at chr22:195689..197201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00570.1 ID=NO22G00570.1|Name=NO22G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1513bp|location=Sequence derived from alignment at chr22:195689..197201- (Nannochloropsis oceanica)
GCTCCATACAGTACCGTGCTGTCCAGCGTCAGGCAATTTGTCTTCACAAC
GCCTTGGATCACGAATTGATCTTATCTTGTACCCCGGTGTAATAAATAAG
ACAGGCGCATGGGCCAGCTCGGGTTCGCATGGAACTCCGTGCTCGCCGAG
AACGCCAGAGAATTCCTTCTTCCATGCCATCCCCTCATACCCGTTTCCCC
TCCGCGCCCAGTGCTACAAAGCTGTAGTTTCCGTGGTCGTTGTCGTCGAT
AGACTGGTGCTAGCGTTGTTGCGTTCCTGCTTCTCCACTTACCCCCTACC
CTTGCCTCTCCTCCCTTCCTCCTTCAAATAGTCACAGGCTCAAAGAACTT
CTCCTCGCCCTGTCAACCAGCCCTCGCCTCCCCTCTCATCTACCACCAAT
CATTCAGCCATGTTCCTAACCCGCAGCGAATACGACCGAGGGGTCAACAC
CTTCTCTCCCGAAGGCCGGTTGTTCCAAGTTGAGTACGCTATTGAGGCCA
TCAAGCTAGGGTCTACAGCCGTGGGGGTCTGCACCAAACATGGCGTCATC
CTCGCTGTGGAAAAGCGCATTTCCTCGCCCCTGCTGGAACCGACGAGCGT
GGAGAAGATTATGGAGGTTGATTCCCATATTGGTGCTGCCATGTCGGGCT
TGATGCCTGATGCCAGAACGTTGGTGGACCATGCTCGGGTGGAGGCGCAG
AATCATCGATTTAGGTACTGTGAAGGGAGAAAAGGGTGGGGAGGAGAGAA
AACGTGCGCAAGGACTTGATGCGGGAAAGTCTCGTTGACGATGACGATGT
TGAAATATGCCACTGGTTGAGGTGGTTGGTTTTCGGTCGCTCGCGCTCCC
CTTTGACCCGATCCCTCCCTCCCTTCCTTCCTCCCTCCTCCCGCCTCTCC
CGATAGTTACAACGAGCCTATCCGGGTGGAGGCCCTGACACAAGGCATAT
GTGACCTGGCCCTCAACTTCGCCGAAGATGGAGAAGAGAAGAAGATGAGC
CGTCCCTTCGGTGTGGCGCTCTTGCTGGCTGGGTATGATGACAAGGGGCC
CCAACTGTTTTTTTCGGACCCCTCCGGAACGTTTACTCAGTTCAAGGCCA
AGGTATGCCTTTCTCGCCATCCCCCCTTCCTTCCCTCCTTCCCTCATCCC
TTTTTCCTGCCTTTGATACGTGTGAAATTTCATCCTCCCTCTACCCCTTT
CTCACCTTCGTAGGCGATTGGTTCGGGTTCGGAAGGCGCGCAAACGAATC
TGCAAGAGAGCTACAGTGACTCCTTCACGCTAGAGGAGGCGGAAAATCTG
GCCTTGTCGACATTGAAGCAAGTGATGGAGGAGAAGATTAGCGCCGACTA
CGTGGAGGTGGCGAGTGTAACGAAGGAGGGATTCAAGAGCTACGGGAAGG
ACGCACTGGACGCCATTCTGGCTAGGATCTAGGAGGGATGGAGGGAAGGT
CGGGAGGAGGCGGTGGTGGAGAGGTAGTGGGAAGAATCATGAAGCGGGTT
AAAGAAGAAAAAG
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Coding sequence (CDS) from alignment at chr22:195689..197201-

>NO22G00570.1 ID=NO22G00570.1|Name=NO22G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr22:195689..197201- (Nannochloropsis oceanica)
ATGTTCCTAACCCGCAGCGAATACGACCGAGGGGTCAACACCTTCTCTCC
CGAAGGCCGGTTGTTCCAAGTTGAGTACGCTATTGAGGCCATCAAGCTAG
GGTCTACAGCCGTGGGGGTCTGCACCAAACATGGCGTCATCCTCGCTGTG
GAAAAGCGCATTTCCTCGCCCCTGCTGGAACCGACGAGCGTGGAGAAGAT
TATGGAGGTTGATTCCCATATTGGTGCTGCCATGTCGGGCTTGATGCCTG
ATGCCAGAACGTTGGTGGACCATGCTCGGGTGGAGGCGCAGAATCATCGA
TTTAGTTACAACGAGCCTATCCGGGTGGAGGCCCTGACACAAGGCATATG
TGACCTGGCCCTCAACTTCGCCGAAGATGGAGAAGAGAAGAAGATGAGCC
GTCCCTTCGGTGTGGCGCTCTTGCTGGCTGGGTATGATGACAAGGGGCCC
CAACTGTTTTTTTCGGACCCCTCCGGAACGTTTACTCAGTTCAAGGCCAA
GGCGATTGGTTCGGGTTCGGAAGGCGCGCAAACGAATCTGCAAGAGAGCT
ACAGTGACTCCTTCACGCTAGAGGAGGCGGAAAATCTGGCCTTGTCGACA
TTGAAGCAAGTGATGGAGGAGAAGATTAGCGCCGACTACGTGGAGGTGGC
GAGTGTAACGAAGGAGGGATTCAAGAGCTACGGGAAGGACGCACTGGACG
CCATTCTGGCTAGGATCTAG
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Synonyms
Publications