NO22G00540, NO22G00540 (gene) Nannochloropsis oceanica

Overview
NameNO22G00540
Unique NameNO22G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2149
Alignment locationchr22:183931..186079 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:183931..186079 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007243Atg6/Beclin
Homology
BLAST of NO22G00540 vs. NCBI_GenBank
Match: EWM21397.1 (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana])

HSP 1 Score: 313.2 bits (801), Expect = 1.800e-81
Identity = 229/460 (49.78%), Postives = 285/460 (61.96%), Query Frame = 0
Query:  157 SFVMVTRMADMSMSFLHVQEAAAAAISSXXXXXXXXXXXXXXXXXXXXXXXTGLSEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKELAHLAEEEARYTSVIAHH-STTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVSRGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVWRDIAKIHARVTSLEAPENALLRVLLEGXXXXXXXXXXXXXXWDDIFVXXXXXXXXXXXXXLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIV--NAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRKNQLAFPLFVVGXXXXXXXXXXXXXXXXXXXXXXXXXYGRLEEGVRRLCLLVSEVQKFVLAGDEEGRELVMEKEERLYMLDLTKTGLRDETAWNTAVQRLVAALGWLVRAACVGRRG 614
            SFVMV RMADM+MS++HVQEAAAAAIS        XXXXXXX         TGL E  RRAE +L+YGAG++D ++PACSHC++VM Q LDKELA+L EEE RY +VI    + + P           +  EDAV+ L E+ EVSRGEEE LRE L  L   E  V      FW ALC  EE   E EEG E++ R++ ++HAR  +L+ P +A+L++LL G   XXXXXXXXXX  ++  +              GGE ++ ++G R+ARRE PR DLWW+EINAAWG+VVL+V                                AVY+G ASR+VQD G+K+QL FPLFVV      XXXXXXXXXXXXXXXXXXX   R++EGVRRLCLLV+E+QK VL  DE  R L +E+EERL+ LD+   GL +E  WN  ++RL  AL WLV   C G  G
Sbjct:  116 SFVMVARMADMNMSYIHVQEAAAAAIS-------PXXXXXXXNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPXXXXXXXXXXXSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGXXXXXXXXXXGREEEALVALEPGGSSG----GGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGXXXXXXXXXXXXXXXXXXXQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGG 564          
BLAST of NO22G00540 vs. NCBI_GenBank
Match: EWM21398.1 (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana])

HSP 1 Score: 313.2 bits (801), Expect = 1.800e-81
Identity = 229/460 (49.78%), Postives = 285/460 (61.96%), Query Frame = 0
Query:  157 SFVMVTRMADMSMSFLHVQEAAAAAISSXXXXXXXXXXXXXXXXXXXXXXXTGLSEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKELAHLAEEEARYTSVIAHH-STTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVSRGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVWRDIAKIHARVTSLEAPENALLRVLLEGXXXXXXXXXXXXXXWDDIFVXXXXXXXXXXXXXLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIV--NAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRKNQLAFPLFVVGXXXXXXXXXXXXXXXXXXXXXXXXXYGRLEEGVRRLCLLVSEVQKFVLAGDEEGRELVMEKEERLYMLDLTKTGLRDETAWNTAVQRLVAALGWLVRAACVGRRG 614
            SFVMV RMADM+MS++HVQEAAAAAIS        XXXXXXX         TGL E  RRAE +L+YGAG++D ++PACSHC++VM Q LDKELA+L EEE RY +VI    + + P           +  EDAV+ L E+ EVSRGEEE LRE L  L   E  V      FW ALC  EE   E EEG E++ R++ ++HAR  +L+ P +A+L++LL G   XXXXXXXXXX  ++  +              GGE ++ ++G R+ARRE PR DLWW+EINAAWG+VVL+V                                AVY+G ASR+VQD G+K+QL FPLFVV      XXXXXXXXXXXXXXXXXXX   R++EGVRRLCLLV+E+QK VL  DE  R L +E+EERL+ LD+   GL +E  WN  ++RL  AL WLV   C G  G
Sbjct:  121 SFVMVARMADMNMSYIHVQEAAAAAIS-------PXXXXXXXNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPXXXXXXXXXXXSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGXXXXXXXXXXGREEEALVALEPGGSSG----GGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGXXXXXXXXXXXXXXXXXXXQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGG 569          
BLAST of NO22G00540 vs. NCBI_GenBank
Match: XP_014565517.1 (hypothetical protein L969DRAFT_239199 [Mixia osmundae IAM 14324] >GAA97097.1 hypothetical protein E5Q_03772 [Mixia osmundae IAM 14324] >KEI36962.1 hypothetical protein L969DRAFT_239199 [Mixia osmundae IAM 14324])

HSP 1 Score: 66.6 bits (161), Expect = 3.000e-7
Identity = 68/291 (23.37%), Postives = 116/291 (39.86%), Query Frame = 0
Query:  211 SEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKELAHLAEEEARYT----SVIAHHSTTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVSRGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVWRDIAKIHARVTSLEAPENALLRVLLEGXXXXXXXXXXXXXXWDDIFVXXXXXXXXXXXXXLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIVNAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRK 498
            S  LR ++ +    +   D + P C+ C D + +++   LA  A E  RY     ++ +  + T P +     T    +  D ++     CE+ R + E L   L+ L  +EA +ARE  +FW+    +  G +  E          A++ +  T  E     L+++                  ++D F                   I TING RL R  +P + + W EINAAWG  +L+++ +A  + F                   YR V +G+ SR+ +  G K
Sbjct:  140 SHRLRASQRLFHLLSASGDADHPLCNECADGLVESMKVRLAEAAAERDRYAAYEKALQSQGAETSPEATASLETRINQLALDEIREKEHLCELER-DVEMLESQLSALDADEARLAREEESFWQEHNTYLLGLQRRE----------AELRSLRTQFEHDAQELVKL-------------QATNVYNDAFCIGH------------DSGIATINGLRLGR--LPNVPIDWPEINAAWGHTLLLLHTIARKLDFT---------------FDTYRLVPMGSVSRIERLMGDK 377          
The following BLAST results are available for this feature:
BLAST of NO22G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21397.11.800e-8149.78hypothetical protein Naga_100479g3 [Nannochloropsi... [more]
EWM21398.11.800e-8149.78hypothetical protein Naga_100479g3 [Nannochloropsi... [more]
XP_014565517.13.000e-723.37hypothetical protein L969DRAFT_239199 [Mixia osmun... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00540.1NO22G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|101128gene_7051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00540.1NO22G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00540 ID=NO22G00540|Name=NO22G00540|organism=Nannochloropsis oceanica|type=gene|length=2149bp
TGGCAGGAGAAGTCTCTGTGGTTCCAATCCAGCCATCGTTGAAGCAACGT
CATCTCCCCAGTAATCGGAACTTTTACGACCTACACCGAGGGGGCACACC
ACACTGACCCACAACACATGAGTTCGCCTCTCTACCCTGATCAAAGTGTG
TCAGATCAACATCTCAGCCGGCTGCGTCGTTGGACTACGTCACAAGCCTT
TTCCCTCTCGCTCACCCAATTCCACTATCCCACACATCAACACAGGCGCA
GCAAGCACACAAAGCGCGTTCCCTCCATGCGGCGCCTAAATGGTACCGCA
GTCGCCGTTGACAACAAGAATGACACAATGGTTGACAACGACGGGCCTCT
TGTCCTCTGTGTCCAGTGTGACCGCCCTATCATGCGCAACTACACCTCAA
GCACAGGCGCCCAGAGGAGCCCTCCTCTTCATTCTCCTTCTCTTTGTCCT
CCTCATTCTACTCATGCCCCCACCTCCATCAGCCACGCTTCTGCGAGGGA
CCAACAACGATCTCCCTCCACTCACCCCTCCACTACAACGCCGTCCCTGC
TCCCCTCCCTCCCTTCCTCCAACCCCTCATCCGCCTCCTTCGTCATGGTT
ACCCGTATGGCCGATATGAGTATGTCCTTCCTCCACGTCCAAGAAGCAGC
TGCTGCTGCCATCTCTTCCCCCTCCTCCTTCACCTCCCGTCCTTCTTCCT
TCCCTTCCTCCTCCTCCTCCTCCTCCTACTCCTCGCACACGGGTTTATCG
GAGCACTTGCGACGTGCGGAGTTCATTTTGCAGTATGGTGCAGGCCAGGT
AGACGTAAACTCCCCTGCCTGCTCTCACTGCATGGATGTCATGGAACAAG
CGTTAGACAAGgtatgtgcatcctccgtccctccctcccttttcttcttc
ttcctcttcttctcctcctcctcttattctacctcctctcccatcatttc
cagccttgtactcttgttttctgattcgtccgttttgctcctccaatcaa
ccatcctccacctttcatcattccccctccccccctccctccctcctgca
gGAATTAGCCCACCTGGCCGAAGAAGAAGCCCGCTACACCTCCGTCATCG
CTCACCACAGCACCACCTGCCCTCCCTCACTCCCACCCTCCTTGACCTCA
ACTCGTGCCGTTATGGAGGACGCGGTGCAAAGACTACACGAGAAATGTGA
GGTGAGCAGGGGGGAGGAAGAGGGGCTGCGGGAGGGCTTGGCAAGACTCA
TGAAGGAAGAGGCAGCAGTCGCGAGGGAGGCGAGGGCGTTTTGGAGGGCC
CTGTGCGCGCATGAGGAGGGAGGGAGGGAGGGGGAGGAAGGGAGGGAGGA
CGTATGGAGGGACATTGCAAAGATTCATGCGCGAGTGACGAGTTTAGAAG
CACCTGAAAATGCTCTTCTGAGGGTCTTGCTCGAGGGAGGGGGCAGGGGT
GGAGGAAGGGAAGGAGGAGGAAGAGGAGTGTGGGATGATATATTTGTAGA
GCGTGGAGGAGGGAAGGAGGGAGGAAGGGTGGGAGGGCTGGGGGGGGAGA
ATATTTATACGATCAATGGGTTTCGACTGGCGAGAAGGGAAGTACCGCGT
ATTGACTTGTGGTGGTCAGAGATTAATGCTGCTTGGGGTCAGGTTGTGCT
GATAGTAAATGCAGTGGCTCACGTGGTAGGGTTTCAGGAGGGAGGGAGGG
AGGAAGAGGGGGAGGGAGGGTGGGAGAGAGGGAAGGGGAGGTATCGGGCT
GTGTACGTGGGAGCGGCGTCACGGCTGGTGCAGGACCAGGGCAGGAAAAA
TCAGTTGGCGTTTCCTTTGTTTGTGGTGGGAGGGGGAGGAAGGGGAGGAA
GAAAGTTGAGAGGAGGGGGAGGGGAGGGGAAGGAGGGAAAGCAGCAGCAG
CAGCACTACGGTCGGTTGGAGGAGGGGGTGAGGAGGTTATGTCTGCTGGT
GTCGGAAGTGCAGAAGTTCGTGCTTGCGGGGGATGAGGAGGGGAGGGAGC
TGGTGATGGAGAAGGAGGAAAGGTTGTACATGCTTGATTTGACCAAGACA
GGACTGAGGGATGAAACGGCGTGGAACACAGCTGTTCAACGGCTGGTCGC
GGCGTTGGGGTGGTTGGTGCGGGCGGCGTGTGTGGGACGGCGAGGATGA
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protein sequence of NO22G00540.1

>NO22G00540.1-protein ID=NO22G00540.1-protein|Name=NO22G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MSSPLYPDQSVSDQHLSRLRRWTTSQAFSLSLTQFHYPTHQHRRSKHTKR
VPSMRRLNGTAVAVDNKNDTMVDNDGPLVLCVQCDRPIMRNYTSSTGAQR
SPPLHSPSLCPPHSTHAPTSISHASARDQQRSPSTHPSTTTPSLLPSLPS
SNPSSASFVMVTRMADMSMSFLHVQEAAAAAISSPSSFTSRPSSFPSSSS
SSSYSSHTGLSEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKEL
AHLAEEEARYTSVIAHHSTTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVS
RGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVW
RDIAKIHARVTSLEAPENALLRVLLEGGGRGGGREGGGRGVWDDIFVERG
GGKEGGRVGGLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIV
NAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRKNQL
AFPLFVVGGGGRGGRKLRGGGGEGKEGKQQQQHYGRLEEGVRRLCLLVSE
VQKFVLAGDEEGRELVMEKEERLYMLDLTKTGLRDETAWNTAVQRLVAAL
GWLVRAACVGRRG*
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Synonyms
Publications