NO22G00540, NO22G00540 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO22G00540 vs. NCBI_GenBank
Match: EWM21397.1 (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana]) HSP 1 Score: 313.2 bits (801), Expect = 1.800e-81 Identity = 229/460 (49.78%), Postives = 285/460 (61.96%), Query Frame = 0 Query: 157 SFVMVTRMADMSMSFLHVQEAAAAAISSXXXXXXXXXXXXXXXXXXXXXXXTGLSEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKELAHLAEEEARYTSVIAHH-STTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVSRGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVWRDIAKIHARVTSLEAPENALLRVLLEGXXXXXXXXXXXXXXWDDIFVXXXXXXXXXXXXXLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIV--NAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRKNQLAFPLFVVGXXXXXXXXXXXXXXXXXXXXXXXXXYGRLEEGVRRLCLLVSEVQKFVLAGDEEGRELVMEKEERLYMLDLTKTGLRDETAWNTAVQRLVAALGWLVRAACVGRRG 614 SFVMV RMADM+MS++HVQEAAAAAIS XXXXXXX TGL E RRAE +L+YGAG++D ++PACSHC++VM Q LDKELA+L EEE RY +VI + + P + EDAV+ L E+ EVSRGEEE LRE L L E V FW ALC EE E EEG E++ R++ ++HAR +L+ P +A+L++LL G XXXXXXXXXX ++ + GGE ++ ++G R+ARRE PR DLWW+EINAAWG+VVL+V AVY+G ASR+VQD G+K+QL FPLFVV XXXXXXXXXXXXXXXXXXX R++EGVRRLCLLV+E+QK VL DE R L +E+EERL+ LD+ GL +E WN ++RL AL WLV C G G Sbjct: 116 SFVMVARMADMNMSYIHVQEAAAAAIS-------PXXXXXXXNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPXXXXXXXXXXXSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGXXXXXXXXXXGREEEALVALEPGGSSG----GGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGXXXXXXXXXXXXXXXXXXXQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGG 564
BLAST of NO22G00540 vs. NCBI_GenBank
Match: EWM21398.1 (hypothetical protein Naga_100479g3 [Nannochloropsis gaditana]) HSP 1 Score: 313.2 bits (801), Expect = 1.800e-81 Identity = 229/460 (49.78%), Postives = 285/460 (61.96%), Query Frame = 0 Query: 157 SFVMVTRMADMSMSFLHVQEAAAAAISSXXXXXXXXXXXXXXXXXXXXXXXTGLSEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKELAHLAEEEARYTSVIAHH-STTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVSRGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVWRDIAKIHARVTSLEAPENALLRVLLEGXXXXXXXXXXXXXXWDDIFVXXXXXXXXXXXXXLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIV--NAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRKNQLAFPLFVVGXXXXXXXXXXXXXXXXXXXXXXXXXYGRLEEGVRRLCLLVSEVQKFVLAGDEEGRELVMEKEERLYMLDLTKTGLRDETAWNTAVQRLVAALGWLVRAACVGRRG 614 SFVMV RMADM+MS++HVQEAAAAAIS XXXXXXX TGL E RRAE +L+YGAG++D ++PACSHC++VM Q LDKELA+L EEE RY +VI + + P + EDAV+ L E+ EVSRGEEE LRE L L E V FW ALC EE E EEG E++ R++ ++HAR +L+ P +A+L++LL G XXXXXXXXXX ++ + GGE ++ ++G R+ARRE PR DLWW+EINAAWG+VVL+V AVY+G ASR+VQD G+K+QL FPLFVV XXXXXXXXXXXXXXXXXXX R++EGVRRLCLLV+E+QK VL DE R L +E+EERL+ LD+ GL +E WN ++RL AL WLV C G G Sbjct: 121 SFVMVARMADMNMSYIHVQEAAAAAIS-------PXXXXXXXNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVMLQGLDKELAYLTEEEGRYNAVITQKGAPSFPXXXXXXXXXXXSAAEDAVKALQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWEDEEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGXXXXXXXXXXGREEEALVALEPGGSSG----GGETVFRVHGLRVARREDPRRDLWWAEINAAWGRVVLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVYMGGASRIVQDPGKKSQLTFPLFVVEGGRLGXXXXXXXXXXXXXXXXXXXQATRMDEGVRRLCLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLRRLAGALNWLVWVVCEGVGG 569
BLAST of NO22G00540 vs. NCBI_GenBank
Match: XP_014565517.1 (hypothetical protein L969DRAFT_239199 [Mixia osmundae IAM 14324] >GAA97097.1 hypothetical protein E5Q_03772 [Mixia osmundae IAM 14324] >KEI36962.1 hypothetical protein L969DRAFT_239199 [Mixia osmundae IAM 14324]) HSP 1 Score: 66.6 bits (161), Expect = 3.000e-7 Identity = 68/291 (23.37%), Postives = 116/291 (39.86%), Query Frame = 0 Query: 211 SEHLRRAEFILQYGAGQVDVNSPACSHCMDVMEQALDKELAHLAEEEARYT----SVIAHHSTTCPPSLPPSLTSTRAVMEDAVQRLHEKCEVSRGEEEGLREGLARLMKEEAAVAREARAFWRALCAHEEGGREGEEGREDVWRDIAKIHARVTSLEAPENALLRVLLEGXXXXXXXXXXXXXXWDDIFVXXXXXXXXXXXXXLGGENIYTINGFRLARREVPRIDLWWSEINAAWGQVVLIVNAVAHVVGFQEGGREEEGEGGWERGKGRYRAVYVGAASRLVQDQGRK 498 S LR ++ + + D + P C+ C D + +++ LA A E RY ++ + + T P + T + D ++ CE+ R + E L L+ L +EA +ARE +FW+ + G + E A++ + T E L+++ ++D F I TING RL R +P + + W EINAAWG +L+++ +A + F YR V +G+ SR+ + G K Sbjct: 140 SHRLRASQRLFHLLSASGDADHPLCNECADGLVESMKVRLAEAAAERDRYAAYEKALQSQGAETSPEATASLETRINQLALDEIREKEHLCELER-DVEMLESQLSALDADEARLAREEESFWQEHNTYLLGLQRRE----------AELRSLRTQFEHDAQELVKL-------------QATNVYNDAFCIGH------------DSGIATINGLRLGR--LPNVPIDWPEINAAWGHTLLLLHTIARKLDFT---------------FDTYRLVPMGSVSRIERLMGDK 377 The following BLAST results are available for this feature:
BLAST of NO22G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO22G00540 ID=NO22G00540|Name=NO22G00540|organism=Nannochloropsis oceanica|type=gene|length=2149bpback to top protein sequence of NO22G00540.1 >NO22G00540.1-protein ID=NO22G00540.1-protein|Name=NO22G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bpback to top Synonyms
Publications
|