NO22G00440, NO22G00440 (gene) Nannochloropsis oceanica

Overview
NameNO22G00440
Unique NameNO22G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length570
Alignment locationchr22:159155..159724 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:159155..159724 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G00440 vs. NCBI_GenBank
Match: EWM21386.1 (hypothetical protein Naga_100215g11 [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 2.700e-23
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:    1 MTELLGMNTEALGHLFGTLMGFAETATGVLAMLTGRPSALLMSQERGEGEEG-TEEEVALREKQARTIKVVRWVLGLVVSYIMWRVARKVGRWVK 95
            MTELLGMNTEALG+LFGTLMGFAETA  VL  LT RP+ LL +     G+EG TEEE A+R KQ + ++VVRW +GL +SY+ WRV RKVGRWVK
Sbjct:  281 MTELLGMNTEALGYLFGTLMGFAETAGNVLGQLTARPARLLEA-----GQEGVTEEEAAVRAKQEKIVRVVRWAVGLALSYLAWRVLRKVGRWVK 370
The following BLAST results are available for this feature:
BLAST of NO22G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21386.12.700e-2366.32hypothetical protein Naga_100215g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004234NSK004234Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00440.1NO22G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100215g11gene9032Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00440.1NO22G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00440 ID=NO22G00440|Name=NO22G00440|organism=Nannochloropsis oceanica|type=gene|length=570bp
ATGACGGAGCTGCTGGGGATGAATACCGAAGCGTTAGGGCACCTCTTTGG
GACGTTGATGGGCTTCGCGGAAACCGCCACGGGGGTGCTGGCTATGCTGA
CGGGTCGACCGTCGGCGTTGTTGATGAGTCAGGAGAGGGGGGAGGGGGAG
GAAGGGACGGAGGAGGAGGTGGCCTTGAGGGAGAAGCAAGCGAGGACGAT
CAAAGTGGTGAGATGGGTGCTGGGGCTCGTCGTGTCATACATAATGTGGC
GGGTGGCGAGGAAAGTGGGGAGGTGGGTGAAGGGGGGAGGGAGGGAGGGA
GCGAGGAGAAGAGCAGCGTTGGCTGCTGCGGCGGCAGCGGCGGCAGCGGG
AGGTGGAGGAGGAGGAGGGATGGGGGGATGGGAGCAGCGGCATGGTCAGT
ACATACCGTTCCAGCACCAACACCAGCACCAGCAGCAACTGCAGTATCGA
GGAGGGGGGGGAGCGGCGGGAGGGGCCAGTGCTTTGTCGGATGCCGCGTT
GGAGCAGGCATTTCAATCAGGAGGGAGGGGGGGAGGAGGGGGTGGAGGGG
GAGGTCAGGGTTTGTTTTAA
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protein sequence of NO22G00440.1

>NO22G00440.1-protein ID=NO22G00440.1-protein|Name=NO22G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MTELLGMNTEALGHLFGTLMGFAETATGVLAMLTGRPSALLMSQERGEGE
EGTEEEVALREKQARTIKVVRWVLGLVVSYIMWRVARKVGRWVKGGGREG
ARRRAALAAAAAAAAAGGGGGGGMGGWEQRHGQYIPFQHQHQHQQQLQYR
GGGGAAGGASALSDAALEQAFQSGGRGGGGGGGGGQGLF*
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Synonyms
Publications